Wall clock time and date at job start Sat Apr 11 2020 00:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47079 * 2 1 4 4 C 1.50697 * 109.47356 * 239.99947 * 2 1 3 5 5 C 1.38242 * 119.97329 * 206.28285 * 4 2 1 6 6 C 1.38206 * 120.01867 * 179.72776 * 5 4 2 7 7 C 1.38460 * 119.97756 * 0.52644 * 6 5 4 8 8 F 1.35099 * 120.02418 * 179.72887 * 7 6 5 9 9 C 1.38451 * 119.94681 * 359.74737 * 7 6 5 10 10 C 1.38199 * 119.97906 * 0.02562 * 9 7 6 11 11 N 1.46502 * 109.47007 * 120.00224 * 2 1 3 12 12 C 1.46503 * 119.99898 * 56.55498 * 11 2 1 13 13 C 1.34775 * 120.00015 * 236.56123 * 11 2 1 14 14 O 1.21589 * 119.99825 * 359.97438 * 13 11 2 15 15 N 1.34774 * 119.99981 * 179.97438 * 13 11 2 16 16 C 1.46507 * 119.99860 * 179.71770 * 15 13 11 17 17 C 1.52999 * 109.46837 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47249 * 300.00309 * 17 16 15 19 19 C 1.52998 * 109.47035 * 60.00684 * 17 16 15 20 20 C 1.50709 * 109.46979 * 180.02562 * 17 16 15 21 21 H 1.07998 * 119.99686 * 358.66691 * 20 17 16 22 22 C 1.37876 * 119.99971 * 178.67147 * 20 17 16 23 23 N 1.31508 * 119.99871 * 6.70916 * 22 20 17 24 24 Si 1.86801 * 119.99740 * 186.70984 * 22 20 17 25 25 H 1.48497 * 109.47095 * 94.97806 * 24 22 20 26 26 H 1.48499 * 109.46794 * 214.97617 * 24 22 20 27 27 H 1.48501 * 109.47191 * 334.97509 * 24 22 20 28 28 H 1.09004 * 109.46729 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47082 * 300.00048 * 1 2 3 30 30 H 1.09002 * 109.47020 * 60.00149 * 1 2 3 31 31 H 1.07997 * 119.99403 * 359.97438 * 5 4 2 32 32 H 1.07999 * 120.00802 * 180.29592 * 6 5 4 33 33 H 1.08004 * 120.01503 * 179.97438 * 9 7 6 34 34 H 1.08000 * 119.99119 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.47234 * 264.61356 * 12 11 2 36 36 H 1.08993 * 109.47199 * 24.61922 * 12 11 2 37 37 H 1.09000 * 109.46597 * 144.61950 * 12 11 2 38 38 H 0.96997 * 120.00263 * 359.97438 * 15 13 11 39 39 H 1.09000 * 109.47362 * 300.00313 * 16 15 13 40 40 H 1.08999 * 109.47060 * 60.00184 * 16 15 13 41 41 H 1.08989 * 109.47364 * 62.75760 * 18 17 16 42 42 H 1.09006 * 109.46621 * 182.75884 * 18 17 16 43 43 H 1.09001 * 109.46895 * 302.75262 * 18 17 16 44 44 H 1.08995 * 109.47722 * 59.99378 * 19 17 16 45 45 H 1.09008 * 109.46743 * 179.97438 * 19 17 16 46 46 H 1.09000 * 109.46893 * 299.99268 * 19 17 16 47 47 H 0.97007 * 119.99692 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 3.2750 -1.3162 -1.2192 6 6 3.7343 -1.9728 -2.3452 7 6 2.9541 -2.0143 -3.4884 8 9 3.4045 -2.6512 -4.5914 9 6 1.7122 -1.4023 -3.5002 10 6 1.2529 -0.7504 -2.3715 11 7 2.0184 -0.6907 1.1962 12 6 1.6032 -2.0694 1.4667 13 6 2.8494 -0.0577 2.0477 14 8 3.1941 1.0864 1.8230 15 7 3.2982 -0.6929 3.1484 16 6 4.2064 -0.0069 4.0709 17 6 4.5604 -0.9429 5.2282 18 6 3.2835 -1.3408 5.9713 19 6 5.2430 -2.1973 4.6792 20 6 5.4942 -0.2371 6.1775 21 1 5.8212 0.7699 5.9643 22 6 5.9311 -0.8769 7.3180 23 7 5.6416 -2.1449 7.5124 24 14 6.9343 0.0573 8.5869 25 1 6.0329 0.5734 9.6482 26 1 7.9397 -0.8533 9.1911 27 1 7.6278 1.1945 7.9302 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.8853 -1.2799 -0.3290 32 1 4.7030 -2.4501 -2.3347 33 1 1.1029 -1.4337 -4.3914 34 1 0.2841 -0.2733 -2.3804 35 1 0.7483 -2.0654 2.1428 36 1 1.3247 -2.5551 0.5316 37 1 2.4280 -2.6133 1.9271 38 1 3.0228 -1.6055 3.3279 39 1 5.1159 0.2770 3.5414 40 1 3.7200 0.8865 4.4624 41 1 2.6288 -1.8940 5.2980 42 1 3.5405 -1.9680 6.8250 43 1 2.7718 -0.4439 6.3203 44 1 6.1526 -1.9139 4.1498 45 1 5.4956 -2.8639 5.5038 46 1 4.5673 -2.7077 3.9929 47 1 5.9487 -2.5950 8.3150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459262018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:01 Heat of formation + Delta-G solvation = -47.743632 kcal Electronic energy + Delta-G solvation = -27663.461529 eV Core-core repulsion = 23760.962316 eV Total energy + Delta-G solvation = -3902.499212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.08961 -40.45072 -39.07316 -36.69958 -35.66677 -33.57288 -32.28552 -31.31163 -30.54016 -28.99183 -26.95736 -25.74003 -25.65875 -25.00625 -23.70357 -23.00143 -21.22957 -19.47251 -18.88789 -18.01518 -17.93316 -16.64771 -16.30020 -15.94917 -15.78670 -15.55763 -15.23279 -14.75267 -14.49209 -14.10754 -13.81000 -13.79242 -13.47449 -13.37466 -12.94567 -12.86313 -12.68721 -12.55867 -12.44398 -12.24770 -12.09891 -11.79406 -11.42318 -11.25624 -11.18466 -11.12628 -10.87135 -10.69389 -10.40010 -10.20034 -9.78748 -9.64510 -9.33537 -9.31512 -8.83527 -8.81079 -8.69122 -8.40068 -8.19263 -6.03199 -4.12477 0.88133 1.00685 2.84646 3.27957 3.35544 3.38693 3.40178 3.53717 4.03760 4.28796 4.40830 4.47637 4.54716 4.65575 4.91337 5.01430 5.05713 5.16758 5.21243 5.23354 5.36786 5.44593 5.64204 5.68297 5.73500 5.77136 5.88941 5.96104 6.04016 6.17725 6.25212 6.35420 6.49093 6.60817 6.65913 6.78065 6.81284 6.90556 7.01630 7.07923 7.21548 7.37337 7.54107 7.69183 7.99273 8.12432 8.35313 8.40757 8.87076 8.98492 9.53158 10.98016 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022127 B = 0.002666 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.106612 B =10499.036985 C =11018.427813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.194 3.806 3 H 0.116 0.884 4 C -0.103 4.103 5 C -0.069 4.069 6 C -0.152 4.152 7 C 0.092 3.908 8 F -0.143 7.143 9 C -0.155 4.155 10 C -0.087 4.087 11 N -0.632 5.632 12 C 0.080 3.920 13 C 0.699 3.301 14 O -0.596 6.596 15 N -0.731 5.731 16 C 0.149 3.851 17 C 0.056 3.944 18 C -0.129 4.129 19 C -0.131 4.131 20 C -0.506 4.506 21 H 0.058 0.942 22 C 0.067 3.933 23 N -0.885 5.885 24 Si 0.892 3.108 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.395 0.605 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.007 0.993 42 H 0.081 0.919 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.090 0.910 46 H 0.002 0.998 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.210 -2.338 -18.163 21.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.090 3.910 3 H 0.134 0.866 4 C -0.104 4.104 5 C -0.088 4.088 6 C -0.171 4.171 7 C 0.073 3.927 8 F -0.122 7.122 9 C -0.174 4.174 10 C -0.105 4.105 11 N -0.370 5.370 12 C -0.064 4.064 13 C 0.400 3.600 14 O -0.475 6.475 15 N -0.386 5.386 16 C 0.026 3.974 17 C 0.056 3.944 18 C -0.186 4.186 19 C -0.188 4.188 20 C -0.544 4.544 21 H 0.076 0.924 22 C -0.135 4.135 23 N -0.524 5.524 24 Si 0.720 3.280 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.198 1.198 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.150 0.850 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.154 0.846 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.231 0.769 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.026 0.974 42 H 0.099 0.901 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.108 0.892 46 H 0.021 0.979 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.874 -1.667 -18.168 21.239 hybrid contribution 0.538 -0.257 0.571 0.825 sum -10.336 -1.924 -17.597 20.499 Atomic orbital electron populations 1.22213 0.94273 1.02607 1.02729 1.19667 0.93671 0.97262 0.80431 0.86596 1.20388 0.94837 0.99292 0.95892 1.20934 0.95172 0.94962 0.97702 1.21190 1.00910 1.02541 0.92425 1.17757 0.94352 0.97007 0.83592 1.91492 1.89282 1.79822 1.51570 1.21101 0.95331 1.00764 1.00191 1.20966 0.99856 0.98192 0.91530 1.47041 1.50987 1.14516 1.24438 1.21658 1.00370 0.82584 1.01784 1.16025 0.79022 0.84584 0.80348 1.90878 1.63069 1.17027 1.76567 1.45647 1.51229 1.17931 1.23755 1.21607 0.90601 0.95682 0.89504 1.18360 0.93590 0.92098 0.90390 1.21785 0.96081 0.99623 1.01152 1.21868 0.97440 0.99780 0.99733 1.20994 1.27589 1.00386 1.05465 0.92363 1.24871 0.95895 0.94715 0.97973 1.69815 1.46518 1.09071 1.26950 0.86572 0.79861 0.79844 0.81701 1.20747 1.21325 1.19848 0.91996 0.91546 0.91174 0.84985 0.84761 0.84834 0.84555 0.92657 0.90950 0.91466 0.76911 0.92958 0.92914 0.97436 0.90061 0.95434 0.95510 0.89180 0.97879 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 8.34 37.16 0.31 -1.01 16 2 C 0.19 2.15 3.04 -69.08 -0.21 1.94 16 3 H 0.12 1.55 6.90 -51.93 -0.36 1.19 16 4 C -0.10 -1.05 4.76 -104.62 -0.50 -1.55 16 5 C -0.07 -0.78 9.03 -39.59 -0.36 -1.14 16 6 C -0.15 -1.61 10.03 -39.51 -0.40 -2.00 16 7 C 0.09 0.96 7.30 -39.42 -0.29 0.67 16 8 F -0.14 -1.59 17.27 2.25 0.04 -1.55 16 9 C -0.16 -1.36 10.03 -39.52 -0.40 -1.75 16 10 C -0.09 -0.73 9.13 -39.59 -0.36 -1.09 16 11 N -0.63 -8.08 1.85 -181.01 -0.34 -8.41 16 12 C 0.08 0.80 8.70 59.85 0.52 1.32 16 13 C 0.70 12.07 8.20 -86.92 -0.71 11.36 16 14 O -0.60 -12.51 15.67 5.29 0.08 -12.42 16 15 N -0.73 -12.91 4.84 -65.22 -0.32 -13.22 16 16 C 0.15 3.15 4.50 -4.04 -0.02 3.13 16 17 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 18 C -0.13 -2.85 8.06 37.16 0.30 -2.55 16 19 C -0.13 -2.91 8.09 37.16 0.30 -2.61 16 20 C -0.51 -13.14 8.01 -34.44 -0.28 -13.42 16 21 H 0.06 1.54 7.75 -52.49 -0.41 1.13 16 22 C 0.07 1.74 5.11 -17.82 -0.09 1.65 16 23 N -0.88 -23.36 9.39 55.43 0.52 -22.84 16 24 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 28 H 0.06 0.45 7.51 -51.93 -0.39 0.06 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.44 6.54 -51.93 -0.34 0.10 16 31 H 0.13 1.67 7.45 -52.49 -0.39 1.28 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 34 H 0.14 0.81 6.08 -52.49 -0.32 0.50 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.61 7.32 -51.93 -0.38 0.23 16 37 H 0.07 0.69 6.66 -51.93 -0.35 0.34 16 38 H 0.39 6.32 4.03 -40.82 -0.16 6.15 16 39 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.01 0.13 6.95 -51.94 -0.36 -0.23 16 42 H 0.08 1.99 6.16 -51.93 -0.32 1.67 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 2.23 5.93 -51.92 -0.31 1.92 16 46 H 0.00 0.04 6.86 -51.93 -0.36 -0.31 16 47 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 LS Contribution 372.16 15.07 5.61 5.61 Total: -1.00 -28.94 372.16 -8.63 -37.57 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.96 Total: 5.52 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.25 Total: -5.83 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -0.13 Total: -44.48 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.08 Total: -12.42 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.94 -8.63 -37.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459262018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.169 kcal (2) G-P(sol) polarization free energy of solvation -28.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds