Wall clock time and date at job start Sat Apr 11 2020 00:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47079 * 2 1 4 4 C 1.50697 * 109.47356 * 239.99947 * 2 1 3 5 5 C 1.38242 * 119.97329 * 206.28285 * 4 2 1 6 6 C 1.38206 * 120.01867 * 179.72776 * 5 4 2 7 7 C 1.38460 * 119.97756 * 0.52644 * 6 5 4 8 8 F 1.35099 * 120.02418 * 179.72887 * 7 6 5 9 9 C 1.38451 * 119.94681 * 359.74737 * 7 6 5 10 10 C 1.38199 * 119.97906 * 0.02562 * 9 7 6 11 11 N 1.46502 * 109.47007 * 120.00224 * 2 1 3 12 12 C 1.46503 * 119.99898 * 56.55498 * 11 2 1 13 13 C 1.34775 * 120.00015 * 236.56123 * 11 2 1 14 14 O 1.21589 * 119.99825 * 359.97438 * 13 11 2 15 15 N 1.34774 * 119.99981 * 179.97438 * 13 11 2 16 16 C 1.46507 * 119.99860 * 179.71770 * 15 13 11 17 17 C 1.52999 * 109.46837 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47249 * 300.00309 * 17 16 15 19 19 C 1.52998 * 109.47035 * 60.00684 * 17 16 15 20 20 C 1.50709 * 109.46979 * 180.02562 * 17 16 15 21 21 H 1.07998 * 119.99686 * 358.66691 * 20 17 16 22 22 C 1.37876 * 119.99971 * 178.67147 * 20 17 16 23 23 N 1.31508 * 119.99871 * 6.70916 * 22 20 17 24 24 Si 1.86801 * 119.99740 * 186.70984 * 22 20 17 25 25 H 1.48497 * 109.47095 * 94.97806 * 24 22 20 26 26 H 1.48499 * 109.46794 * 214.97617 * 24 22 20 27 27 H 1.48501 * 109.47191 * 334.97509 * 24 22 20 28 28 H 1.09004 * 109.46729 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47082 * 300.00048 * 1 2 3 30 30 H 1.09002 * 109.47020 * 60.00149 * 1 2 3 31 31 H 1.07997 * 119.99403 * 359.97438 * 5 4 2 32 32 H 1.07999 * 120.00802 * 180.29592 * 6 5 4 33 33 H 1.08004 * 120.01503 * 179.97438 * 9 7 6 34 34 H 1.08000 * 119.99119 * 180.02562 * 10 9 7 35 35 H 1.08998 * 109.47234 * 264.61356 * 12 11 2 36 36 H 1.08993 * 109.47199 * 24.61922 * 12 11 2 37 37 H 1.09000 * 109.46597 * 144.61950 * 12 11 2 38 38 H 0.96997 * 120.00263 * 359.97438 * 15 13 11 39 39 H 1.09000 * 109.47362 * 300.00313 * 16 15 13 40 40 H 1.08999 * 109.47060 * 60.00184 * 16 15 13 41 41 H 1.08989 * 109.47364 * 62.75760 * 18 17 16 42 42 H 1.09006 * 109.46621 * 182.75884 * 18 17 16 43 43 H 1.09001 * 109.46895 * 302.75262 * 18 17 16 44 44 H 1.08995 * 109.47722 * 59.99378 * 19 17 16 45 45 H 1.09008 * 109.46743 * 179.97438 * 19 17 16 46 46 H 1.09000 * 109.46893 * 299.99268 * 19 17 16 47 47 H 0.97007 * 119.99692 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 3.2750 -1.3162 -1.2192 6 6 3.7343 -1.9728 -2.3452 7 6 2.9541 -2.0143 -3.4884 8 9 3.4045 -2.6512 -4.5914 9 6 1.7122 -1.4023 -3.5002 10 6 1.2529 -0.7504 -2.3715 11 7 2.0184 -0.6907 1.1962 12 6 1.6032 -2.0694 1.4667 13 6 2.8494 -0.0577 2.0477 14 8 3.1941 1.0864 1.8230 15 7 3.2982 -0.6929 3.1484 16 6 4.2064 -0.0069 4.0709 17 6 4.5604 -0.9429 5.2282 18 6 3.2835 -1.3408 5.9713 19 6 5.2430 -2.1973 4.6792 20 6 5.4942 -0.2371 6.1775 21 1 5.8212 0.7699 5.9643 22 6 5.9311 -0.8769 7.3180 23 7 5.6416 -2.1449 7.5124 24 14 6.9343 0.0573 8.5869 25 1 6.0329 0.5734 9.6482 26 1 7.9397 -0.8533 9.1911 27 1 7.6278 1.1945 7.9302 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.8853 -1.2799 -0.3290 32 1 4.7030 -2.4501 -2.3347 33 1 1.1029 -1.4337 -4.3914 34 1 0.2841 -0.2733 -2.3804 35 1 0.7483 -2.0654 2.1428 36 1 1.3247 -2.5551 0.5316 37 1 2.4280 -2.6133 1.9271 38 1 3.0228 -1.6055 3.3279 39 1 5.1159 0.2770 3.5414 40 1 3.7200 0.8865 4.4624 41 1 2.6288 -1.8940 5.2980 42 1 3.5405 -1.9680 6.8250 43 1 2.7718 -0.4439 6.3203 44 1 6.1526 -1.9139 4.1498 45 1 5.4956 -2.8639 5.5038 46 1 4.5673 -2.7077 3.9929 47 1 5.9487 -2.5950 8.3150 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459262018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:01 Heat of formation + Delta-G solvation = -61.460507 kcal Electronic energy + Delta-G solvation = -27664.056337 eV Core-core repulsion = 23760.962316 eV Total energy + Delta-G solvation = -3903.094021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.90485 -41.57688 -40.10350 -38.28695 -36.88447 -35.13807 -33.51420 -32.38896 -31.87058 -29.75161 -27.91091 -27.56359 -27.44678 -26.68335 -24.69770 -23.75822 -22.28033 -20.65886 -20.61670 -19.28212 -18.76174 -17.83213 -17.58075 -17.21355 -16.82086 -16.64540 -16.58107 -16.23049 -15.52273 -15.41030 -15.06916 -14.78871 -14.57847 -14.52934 -14.38156 -14.05864 -13.94428 -13.72249 -13.33572 -13.23651 -13.18410 -13.04575 -12.96243 -12.68799 -12.59328 -12.55701 -12.25329 -12.12282 -12.03735 -11.87650 -11.48171 -11.31372 -11.09164 -10.71795 -10.37867 -10.10153 -10.07627 -9.61418 -9.44725 -8.02348 -6.17182 0.09334 0.26326 1.42629 1.45962 1.54005 1.70879 2.17383 2.46195 2.60597 3.10657 3.21024 3.27380 3.62742 3.77110 3.95461 4.14344 4.23435 4.27789 4.37613 4.44082 4.47750 4.53570 4.64504 4.71014 4.73554 4.87418 4.93881 4.95286 5.01752 5.05212 5.05751 5.10893 5.15651 5.20319 5.24135 5.31584 5.39310 5.43858 5.62064 5.66416 5.68525 5.71689 5.90035 5.98254 6.14696 6.23183 6.44917 6.86815 7.03586 7.50287 7.61120 8.96489 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022127 B = 0.002666 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.106612 B =10499.036985 C =11018.427813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.191 3.809 3 H 0.088 0.912 4 C -0.106 4.106 5 C -0.084 4.084 6 C -0.160 4.160 7 C 0.079 3.921 8 F -0.149 7.149 9 C -0.147 4.147 10 C -0.075 4.075 11 N -0.621 5.621 12 C 0.074 3.926 13 C 0.697 3.303 14 O -0.639 6.639 15 N -0.725 5.725 16 C 0.168 3.832 17 C 0.053 3.947 18 C -0.118 4.118 19 C -0.120 4.120 20 C -0.529 4.529 21 H 0.044 0.956 22 C 0.030 3.970 23 N -0.898 5.898 24 Si 0.944 3.056 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.277 1.277 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.136 0.864 33 H 0.160 0.840 34 H 0.169 0.831 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.404 0.596 39 H 0.032 0.968 40 H 0.035 0.965 41 H 0.037 0.963 42 H 0.058 0.942 43 H 0.020 0.980 44 H 0.015 0.985 45 H 0.067 0.933 46 H 0.033 0.967 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.445 -3.089 -19.658 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.087 3.913 3 H 0.106 0.894 4 C -0.107 4.107 5 C -0.103 4.103 6 C -0.179 4.179 7 C 0.059 3.941 8 F -0.128 7.128 9 C -0.165 4.165 10 C -0.093 4.093 11 N -0.357 5.357 12 C -0.068 4.068 13 C 0.398 3.602 14 O -0.521 6.521 15 N -0.381 5.381 16 C 0.043 3.957 17 C 0.052 3.948 18 C -0.176 4.176 19 C -0.177 4.177 20 C -0.568 4.568 21 H 0.062 0.938 22 C -0.170 4.170 23 N -0.536 5.536 24 Si 0.770 3.230 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.202 1.202 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.154 0.846 33 H 0.178 0.822 34 H 0.187 0.813 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.243 0.757 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.039 0.961 44 H 0.034 0.966 45 H 0.086 0.914 46 H 0.051 0.949 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.144 -2.462 -19.690 23.802 hybrid contribution 1.219 -0.033 0.951 1.546 sum -11.926 -2.495 -18.739 22.351 Atomic orbital electron populations 1.22189 0.91397 1.03915 1.03560 1.19808 0.95741 0.95744 0.79992 0.89385 1.20344 0.94719 0.99353 0.96296 1.20803 0.95754 0.96424 0.97317 1.21225 1.01313 1.02758 0.92565 1.17963 0.95198 0.97620 0.83271 1.91477 1.89496 1.80063 1.51782 1.21420 0.94607 0.99340 1.01177 1.21250 1.00596 0.97198 0.90224 1.47056 1.49383 1.15460 1.23831 1.21882 1.00778 0.80764 1.03375 1.16153 0.79354 0.84151 0.80552 1.90847 1.64686 1.19065 1.77521 1.45341 1.50964 1.18159 1.23679 1.21119 0.90298 0.94941 0.89331 1.18345 0.93556 0.92339 0.90523 1.21624 0.96035 0.99169 1.00762 1.21697 0.97615 0.99133 0.99290 1.21271 1.28626 1.00173 1.06713 0.93789 1.25426 0.96828 0.95439 0.99290 1.69913 1.46883 1.09645 1.27180 0.85771 0.78721 0.78725 0.79744 1.20410 1.20910 1.20153 0.90335 0.92608 0.88536 0.87140 0.84577 0.82210 0.81344 0.91090 0.88802 0.91697 0.75745 0.94916 0.94624 0.94425 0.92319 0.96076 0.96626 0.91398 0.94856 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.34 71.98 0.60 -1.42 16 2 C 0.19 3.96 3.04 44.25 0.13 4.09 16 3 H 0.09 2.36 6.90 -2.39 -0.02 2.34 16 4 C -0.11 -1.96 4.76 -19.86 -0.09 -2.06 16 5 C -0.08 -1.86 9.03 22.26 0.20 -1.66 16 6 C -0.16 -3.29 10.03 22.31 0.22 -3.07 16 7 C 0.08 1.50 7.30 22.37 0.16 1.67 16 8 F -0.15 -3.12 17.27 44.97 0.78 -2.34 16 9 C -0.15 -2.08 10.03 22.31 0.22 -1.86 16 10 C -0.07 -0.98 9.13 22.26 0.20 -0.78 16 11 N -0.62 -15.21 1.85 -844.85 -1.57 -16.77 16 12 C 0.07 1.31 8.70 127.77 1.11 2.42 16 13 C 0.70 24.17 8.20 179.06 1.47 25.64 16 14 O -0.64 -27.63 15.67 -4.00 -0.06 -27.69 16 15 N -0.73 -25.48 4.84 -478.53 -2.32 -27.79 16 16 C 0.17 7.25 4.50 86.38 0.39 7.64 16 17 C 0.05 2.45 0.50 -52.93 -0.03 2.43 16 18 C -0.12 -5.18 8.06 71.98 0.58 -4.60 16 19 C -0.12 -5.32 8.09 71.98 0.58 -4.74 16 20 C -0.53 -28.07 8.01 25.60 0.20 -27.87 16 21 H 0.04 2.39 7.75 -2.91 -0.02 2.37 16 22 C 0.03 1.58 5.11 84.66 0.43 2.01 16 23 N -0.90 -47.62 9.39 21.45 0.20 -47.42 16 24 Si 0.94 42.59 29.54 68.60 2.03 44.62 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 26 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 28 H 0.08 0.81 7.51 -2.38 -0.02 0.79 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.78 6.54 -2.39 -0.02 0.76 16 31 H 0.11 2.89 7.45 -2.91 -0.02 2.87 16 32 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 34 H 0.17 1.12 6.08 -2.91 -0.02 1.10 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.09 1.29 7.32 -2.39 -0.02 1.27 16 37 H 0.06 1.19 6.66 -2.39 -0.02 1.18 16 38 H 0.40 12.38 4.03 -92.71 -0.37 12.01 16 39 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 41 H 0.04 1.37 6.95 -2.39 -0.02 1.36 16 42 H 0.06 2.86 6.16 -2.38 -0.01 2.84 16 43 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.07 3.36 5.93 -2.38 -0.01 3.35 16 46 H 0.03 1.23 6.86 -2.39 -0.02 1.22 16 47 H 0.26 13.29 8.31 -92.70 -0.77 12.52 16 Total: -1.00 -64.34 372.16 6.06 -58.28 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.61 Total: 21.27 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 6.40 Total: -2.15 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -3.68 Total: -91.99 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.06 Total: -27.69 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.78 Total: -2.34 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -64.34 6.06 -58.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459262018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.180 kcal (2) G-P(sol) polarization free energy of solvation -64.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds