Wall clock time and date at job start Sat Apr 11 2020 00:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47240 * 2 1 4 4 C 1.50707 * 109.47164 * 119.99801 * 2 1 3 5 5 C 1.38239 * 119.97361 * 65.06585 * 4 2 1 6 6 C 1.38206 * 120.02375 * 179.72955 * 5 4 2 7 7 C 1.38452 * 119.97141 * 0.51728 * 6 5 4 8 8 F 1.35105 * 120.02124 * 179.72959 * 7 6 5 9 9 C 1.38461 * 119.95545 * 359.75271 * 7 6 5 10 10 C 1.38201 * 119.96908 * 0.02562 * 9 7 6 11 11 N 1.46502 * 109.47440 * 239.99668 * 2 1 3 12 12 C 1.46498 * 120.00028 * 306.04918 * 11 2 1 13 13 C 1.34771 * 119.99833 * 126.04271 * 11 2 1 14 14 O 1.21593 * 120.00368 * 0.02562 * 13 11 2 15 15 N 1.34778 * 119.99887 * 180.02562 * 13 11 2 16 16 C 1.46500 * 120.00071 * 180.02562 * 15 13 11 17 17 C 1.53006 * 109.47108 * 179.97438 * 16 15 13 18 18 C 1.52997 * 109.46992 * 300.00235 * 17 16 15 19 19 C 1.53008 * 109.46964 * 60.00024 * 17 16 15 20 20 C 1.50697 * 109.47326 * 179.97438 * 17 16 15 21 21 H 1.08014 * 119.99638 * 359.97438 * 20 17 16 22 22 C 1.37868 * 120.00318 * 180.02562 * 20 17 16 23 23 N 1.31516 * 120.00011 * 0.02562 * 22 20 17 24 24 Si 1.86803 * 120.00378 * 180.02562 * 22 20 17 25 25 H 1.48497 * 109.46820 * 59.99786 * 24 22 20 26 26 H 1.48495 * 109.47623 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.46905 * 300.00340 * 24 22 20 28 28 H 1.09001 * 109.46864 * 299.99810 * 1 2 3 29 29 H 1.08997 * 109.47001 * 60.00058 * 1 2 3 30 30 H 1.09002 * 109.46794 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.98735 * 359.97260 * 5 4 2 32 32 H 1.07997 * 120.01294 * 180.25142 * 6 5 4 33 33 H 1.07996 * 120.01658 * 179.97438 * 9 7 6 34 34 H 1.07998 * 119.98800 * 180.02562 * 10 9 7 35 35 H 1.09000 * 109.46668 * 264.96365 * 12 11 2 36 36 H 1.08994 * 109.47214 * 144.96181 * 12 11 2 37 37 H 1.09007 * 109.46991 * 24.95795 * 12 11 2 38 38 H 0.97006 * 120.00046 * 0.02562 * 15 13 11 39 39 H 1.09004 * 109.46886 * 299.99915 * 16 15 13 40 40 H 1.08995 * 109.47112 * 60.00176 * 16 15 13 41 41 H 1.08996 * 109.47622 * 60.00193 * 18 17 16 42 42 H 1.09000 * 109.47009 * 180.02562 * 18 17 16 43 43 H 1.09002 * 109.46839 * 299.99528 * 18 17 16 44 44 H 1.08998 * 109.46803 * 60.00155 * 19 17 16 45 45 H 1.09000 * 109.46628 * 179.97438 * 19 17 16 46 46 H 1.09001 * 109.46961 * 299.99920 * 19 17 16 47 47 H 0.97002 * 120.00225 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.7866 -2.0605 1.3973 6 6 2.2516 -2.7142 2.5227 7 6 2.9546 -2.0140 3.4883 8 9 3.4049 -2.6509 4.5915 9 6 3.1953 -0.6606 3.3230 10 6 2.7333 -0.0100 2.1946 11 7 2.0184 -0.6907 -1.1961 12 6 1.5587 -2.0488 -1.4968 13 6 2.8905 -0.0766 -2.0199 14 8 3.2723 1.0505 -1.7702 15 7 3.3394 -0.7118 -3.1206 16 6 4.2879 -0.0445 -4.0158 17 6 4.6342 -0.9768 -5.1785 18 6 5.2640 -2.2600 -4.6330 19 6 3.3600 -1.3228 -5.9517 20 6 5.6093 -0.2902 -6.0997 21 1 5.9479 0.7113 -5.8783 22 6 6.0685 -0.9399 -7.2257 23 7 5.6551 -2.1588 -7.4962 24 14 7.2778 -0.0891 -8.3673 25 1 8.5147 0.2461 -7.6170 26 1 7.6129 -0.9934 -9.4965 27 1 6.6666 1.1567 -8.8961 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.2344 -2.6055 0.6460 32 1 2.0631 -3.7698 2.6508 33 1 3.7432 -0.1134 4.0758 34 1 2.9213 1.0456 2.0651 35 1 2.2761 -2.7701 -1.1055 36 1 1.4713 -2.1722 -2.5762 37 1 0.5866 -2.2145 -1.0322 38 1 3.0346 -1.6108 -3.3200 39 1 3.8392 0.8700 -4.4041 40 1 5.1957 0.2016 -3.4651 41 1 4.5584 -2.7565 -3.9670 42 1 5.5112 -2.9240 -5.4614 43 1 6.1718 -2.0135 -4.0823 44 1 2.9113 -0.4086 -6.3403 45 1 3.6068 -1.9867 -6.7803 46 1 2.6544 -1.8193 -5.2856 47 1 5.9778 -2.6158 -8.2886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459262019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:04 Heat of formation + Delta-G solvation = -46.997016 kcal Electronic energy + Delta-G solvation = -27631.745673 eV Core-core repulsion = 23729.278836 eV Total energy + Delta-G solvation = -3902.466837 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.09122 -40.43077 -39.06317 -36.70160 -35.69925 -33.53180 -32.08475 -31.39545 -30.51729 -29.12449 -27.17573 -25.72439 -25.61487 -24.91025 -23.49517 -23.20618 -21.33928 -19.52350 -18.86330 -17.96975 -17.86573 -16.62828 -16.41703 -15.85984 -15.80105 -15.58774 -15.15592 -14.74813 -14.46678 -14.13515 -13.91451 -13.78359 -13.54945 -13.38103 -13.03262 -12.86107 -12.63457 -12.54638 -12.42918 -12.22322 -12.07773 -11.76431 -11.38090 -11.23598 -11.18673 -11.08158 -10.84327 -10.72175 -10.37938 -10.20035 -9.74969 -9.62713 -9.33430 -9.30695 -8.82158 -8.78908 -8.72571 -8.40254 -8.17050 -6.01658 -4.11617 0.87465 1.00341 2.86118 3.30694 3.34829 3.38289 3.40822 3.58369 4.03484 4.32447 4.40879 4.47383 4.51636 4.64923 4.92021 4.93372 5.01461 5.09740 5.19592 5.25123 5.38516 5.42791 5.58891 5.62985 5.74848 5.76531 5.88096 5.92642 6.02379 6.18553 6.28992 6.37189 6.50193 6.57381 6.65217 6.80189 6.82270 6.91960 7.03472 7.09753 7.22810 7.38791 7.56109 7.70030 8.01467 8.12489 8.36730 8.42078 8.87816 9.00845 9.54135 10.99786 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020302 B = 0.002673 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.848698 B =10473.461066 C =10805.424405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.194 3.806 3 H 0.112 0.888 4 C -0.100 4.100 5 C -0.085 4.085 6 C -0.154 4.154 7 C 0.094 3.906 8 F -0.143 7.143 9 C -0.153 4.153 10 C -0.075 4.075 11 N -0.630 5.630 12 C 0.071 3.929 13 C 0.701 3.299 14 O -0.597 6.597 15 N -0.731 5.731 16 C 0.149 3.851 17 C 0.057 3.943 18 C -0.129 4.129 19 C -0.129 4.129 20 C -0.506 4.506 21 H 0.057 0.943 22 C 0.067 3.933 23 N -0.887 5.887 24 Si 0.894 3.106 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.277 1.277 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.394 0.606 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.004 0.996 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.027 0.973 45 H 0.085 0.915 46 H 0.004 0.996 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.610 -2.141 17.986 21.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.090 3.910 3 H 0.130 0.870 4 C -0.102 4.102 5 C -0.103 4.103 6 C -0.173 4.173 7 C 0.074 3.926 8 F -0.121 7.121 9 C -0.172 4.172 10 C -0.094 4.094 11 N -0.368 5.368 12 C -0.072 4.072 13 C 0.403 3.597 14 O -0.476 6.476 15 N -0.386 5.386 16 C 0.026 3.974 17 C 0.056 3.944 18 C -0.187 4.187 19 C -0.187 4.187 20 C -0.544 4.544 21 H 0.075 0.925 22 C -0.135 4.135 23 N -0.525 5.525 24 Si 0.722 3.278 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.230 0.770 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.023 0.977 42 H 0.104 0.896 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.104 0.896 46 H 0.023 0.977 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.256 -1.479 18.001 21.282 hybrid contribution 0.674 -0.307 -0.481 0.883 sum -10.582 -1.786 17.520 20.546 Atomic orbital electron populations 1.22170 0.94072 1.02491 1.02870 1.19718 0.93695 0.97201 0.80435 0.87025 1.20337 0.98928 0.94478 0.96461 1.21120 0.98597 0.94068 0.96539 1.21133 1.00770 1.00847 0.94573 1.17756 0.98962 0.91154 0.84688 1.91495 1.87347 1.82140 1.51160 1.21142 1.03068 0.92990 1.00000 1.20979 0.95505 1.00524 0.92358 1.47027 1.48179 1.16378 1.25251 1.21863 0.99974 0.83694 1.01682 1.15991 0.79108 0.84384 0.80246 1.90862 1.62690 1.18397 1.75678 1.45637 1.48780 1.19627 1.24514 1.21599 0.89765 0.95932 0.90098 1.18351 0.93811 0.91973 0.90255 1.21813 0.97466 0.99719 0.99691 1.21823 0.95697 1.00196 1.01002 1.20953 1.25375 1.01033 1.07088 0.92452 1.24871 0.96279 0.94855 0.97465 1.69794 1.44050 1.11837 1.26861 0.86630 0.81611 0.79376 0.80226 1.20265 1.21348 1.20281 0.91186 0.91466 0.92120 0.84640 0.84803 0.84729 0.84703 0.92623 0.91218 0.90561 0.76954 0.92939 0.92974 0.97663 0.89646 0.95464 0.95430 0.89609 0.97702 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 8.93 37.16 0.33 -0.99 16 2 C 0.19 2.18 2.95 -69.08 -0.20 1.97 16 3 H 0.11 1.46 6.66 -51.93 -0.35 1.12 16 4 C -0.10 -1.05 4.96 -104.61 -0.52 -1.57 16 5 C -0.09 -0.79 8.26 -39.59 -0.33 -1.12 16 6 C -0.15 -1.46 10.03 -39.51 -0.40 -1.86 16 7 C 0.09 0.99 7.30 -39.42 -0.29 0.70 16 8 F -0.14 -1.60 17.27 2.25 0.04 -1.57 16 9 C -0.15 -1.52 10.03 -39.51 -0.40 -1.92 16 10 C -0.08 -0.77 9.67 -39.59 -0.38 -1.15 16 11 N -0.63 -8.27 2.75 -181.00 -0.50 -8.77 16 12 C 0.07 0.70 7.89 59.85 0.47 1.17 16 13 C 0.70 12.49 8.28 -86.92 -0.72 11.77 16 14 O -0.60 -12.74 15.68 5.28 0.08 -12.65 16 15 N -0.73 -13.24 4.82 -65.22 -0.31 -13.56 16 16 C 0.15 3.21 4.50 -4.04 -0.02 3.19 16 17 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 18 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 19 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 20 C -0.51 -13.26 8.01 -34.45 -0.28 -13.53 16 21 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 22 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 23 N -0.89 -23.54 9.35 55.43 0.52 -23.02 16 24 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.43 6.03 -51.93 -0.31 0.11 16 31 H 0.14 1.01 4.86 -52.49 -0.26 0.76 16 32 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.14 1.23 7.95 -52.49 -0.42 0.81 16 35 H 0.06 0.52 7.50 -51.93 -0.39 0.14 16 36 H 0.07 0.70 6.64 -51.93 -0.34 0.35 16 37 H 0.08 0.54 5.08 -51.93 -0.26 0.27 16 38 H 0.39 6.45 4.00 -40.82 -0.16 6.29 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 42 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 2.12 6.07 -51.93 -0.31 1.80 16 46 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 47 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 368.95 15.07 5.56 5.56 Total: -1.00 -29.75 368.95 -8.69 -38.43 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.76 Total: 5.54 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -2.29 Total: -5.66 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.29 Total: -45.35 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.08 Total: -12.65 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.75 -8.69 -38.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459262019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.562 kcal (2) G-P(sol) polarization free energy of solvation -29.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds