Wall clock time and date at job start Sat Apr 11 2020 00:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47169 * 2 1 4 4 C 1.52998 * 109.47340 * 239.99526 * 2 1 3 5 5 C 1.50698 * 109.46950 * 175.00048 * 4 2 1 6 6 O 1.21291 * 120.00268 * 0.02562 * 5 4 2 7 7 N 1.34782 * 119.99711 * 179.97438 * 5 4 2 8 8 C 1.39924 * 119.99875 * 184.69822 * 7 5 4 9 9 C 1.38908 * 120.05937 * 324.51639 * 8 7 5 10 10 C 1.38093 * 119.97893 * 180.27642 * 9 8 7 11 11 C 1.38272 * 120.09807 * 359.97438 * 10 9 8 12 12 C 1.38488 * 120.11358 * 0.02562 * 11 10 9 13 13 F 1.35095 * 119.99041 * 180.02562 * 12 11 10 14 14 C 1.38354 * 120.01727 * 359.97438 * 12 11 10 15 15 N 1.46901 * 109.46666 * 119.99546 * 2 1 3 16 16 C 1.46900 * 111.00327 * 274.99777 * 15 2 1 17 17 C 1.53000 * 109.47447 * 180.02562 * 16 15 2 18 18 C 1.53004 * 109.46990 * 300.00275 * 17 16 15 19 19 C 1.52992 * 109.46866 * 60.00108 * 17 16 15 20 20 C 1.50696 * 109.47206 * 180.02562 * 17 16 15 21 21 H 1.08002 * 119.99974 * 1.41296 * 20 17 16 22 22 C 1.37879 * 120.00067 * 181.40946 * 20 17 16 23 23 N 1.31513 * 120.00247 * 192.03410 * 22 20 17 24 24 Si 1.86798 * 119.99920 * 12.03819 * 22 20 17 25 25 H 1.48501 * 109.47248 * 84.63551 * 24 22 20 26 26 H 1.48501 * 109.47139 * 204.63842 * 24 22 20 27 27 H 1.48502 * 109.47255 * 324.63835 * 24 22 20 28 28 H 1.09002 * 109.47169 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47385 * 300.00687 * 1 2 3 30 30 H 1.09003 * 109.46796 * 60.00080 * 1 2 3 31 31 H 1.09001 * 109.47058 * 55.00359 * 4 2 1 32 32 H 1.08999 * 109.46879 * 295.00163 * 4 2 1 33 33 H 0.96999 * 119.99749 * 4.70504 * 7 5 4 34 34 H 1.08002 * 120.00644 * 0.24632 * 9 8 7 35 35 H 1.08007 * 119.95180 * 179.97438 * 10 9 8 36 36 H 1.08003 * 119.94198 * 180.02562 * 11 10 9 37 37 H 1.08004 * 120.04398 * 180.02562 * 14 12 11 38 38 H 1.00904 * 110.99784 * 151.05120 * 15 2 1 39 39 H 1.08999 * 109.47640 * 300.00453 * 16 15 2 40 40 H 1.09008 * 109.46502 * 60.00075 * 16 15 2 41 41 H 1.08999 * 109.46950 * 68.93071 * 18 17 16 42 42 H 1.09003 * 109.46834 * 188.92809 * 18 17 16 43 43 H 1.09003 * 109.47053 * 308.92762 * 18 17 16 44 44 H 1.09000 * 109.47208 * 60.00181 * 19 17 16 45 45 H 1.09002 * 109.47260 * 180.02562 * 19 17 16 46 46 H 1.08999 * 109.47769 * 300.00168 * 19 17 16 47 47 H 0.96994 * 120.00027 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3125 6 8 4.1451 -0.0211 -0.4438 7 7 4.2150 -1.1807 -2.3341 8 6 5.6142 -1.1674 -2.3426 9 6 6.3027 -0.0727 -1.8355 10 6 7.6835 -0.0589 -1.8499 11 6 8.3823 -1.1337 -2.3680 12 6 7.6998 -2.2271 -2.8746 13 9 8.3851 -3.2760 -3.3797 14 6 6.3165 -2.2459 -2.8625 15 7 2.0195 -0.6924 1.1995 16 6 2.0824 0.2227 2.3469 17 6 2.5960 -0.5327 3.5743 18 6 1.6470 -1.6890 3.8955 19 6 3.9933 -1.0849 3.2854 20 6 2.6599 0.4060 4.7515 21 1 2.3421 1.4323 4.6416 22 6 3.1238 -0.0455 5.9689 23 7 2.9623 0.6891 7.0477 24 14 3.9820 -1.7005 6.0858 25 1 5.4195 -1.5376 5.7503 26 1 3.8530 -2.2285 7.4678 27 1 3.3560 -2.6513 5.1322 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6055 -0.2618 -2.1369 32 1 1.7516 -1.7716 -1.2054 33 1 3.7294 -1.5969 -3.0634 34 1 5.7582 0.7675 -1.4305 35 1 8.2184 0.7927 -1.4559 36 1 9.4622 -1.1204 -2.3777 37 1 5.7838 -3.0986 -3.2571 38 1 2.9172 -1.1204 1.0289 39 1 2.7587 1.0463 2.1183 40 1 1.0869 0.6165 2.5525 41 1 1.7203 -2.4467 3.1153 42 1 1.9208 -2.1279 4.8550 43 1 0.6239 -1.3163 3.9452 44 1 4.6693 -0.2611 3.0565 45 1 4.3591 -1.6234 4.1596 46 1 3.9468 -1.7639 2.4340 47 1 3.2883 0.3713 7.9041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459738961.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:08 Heat of formation + Delta-G solvation = -64.312198 kcal Electronic energy + Delta-G solvation = -27694.008526 eV Core-core repulsion = 23790.790847 eV Total energy + Delta-G solvation = -3903.217679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.94369 -41.71883 -39.74199 -38.79631 -36.60699 -35.80042 -33.97772 -31.88879 -31.57977 -30.60221 -28.67007 -27.96446 -27.09351 -25.93245 -24.12305 -23.89724 -21.97585 -21.05890 -20.60116 -19.21373 -18.39189 -18.08362 -17.52527 -17.38258 -17.16118 -16.63111 -16.60749 -16.46795 -16.29878 -15.57149 -15.29028 -15.05077 -14.77751 -14.73165 -14.32501 -14.21678 -14.00290 -13.83477 -13.60290 -13.54786 -13.12139 -13.03059 -12.80713 -12.71943 -12.55988 -12.36667 -12.28636 -11.90597 -11.82343 -11.70319 -11.52102 -11.45247 -10.96057 -10.86799 -10.59524 -10.31606 -9.88201 -9.29556 -9.17469 -8.29894 -6.29369 0.06939 0.14925 1.33005 1.35497 1.46852 1.51012 1.91852 2.34110 2.60634 3.07304 3.27543 3.40709 3.61198 3.79666 3.87566 4.01031 4.11538 4.23349 4.34484 4.37617 4.42139 4.45579 4.52352 4.59552 4.72973 4.80391 4.86062 4.88809 4.93860 4.96914 5.05115 5.08967 5.10016 5.15625 5.18540 5.20233 5.30207 5.34291 5.40877 5.50387 5.61795 5.75965 5.87823 5.90459 6.24866 6.35459 6.36837 6.62086 6.77873 7.09745 7.35827 8.87618 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.003532 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.709582 B = 7926.412274 C = 9404.449795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.087 3.913 3 H 0.026 0.974 4 C -0.129 4.129 5 C 0.506 3.494 6 O -0.553 6.553 7 N -0.659 5.659 8 C 0.168 3.832 9 C -0.149 4.149 10 C -0.077 4.077 11 C -0.171 4.171 12 C 0.102 3.898 13 F -0.143 7.143 14 C -0.178 4.178 15 N -0.674 5.674 16 C 0.106 3.894 17 C 0.036 3.964 18 C -0.122 4.122 19 C -0.134 4.134 20 C -0.512 4.512 21 H 0.027 0.973 22 C 0.017 3.983 23 N -0.949 5.949 24 Si 0.938 3.062 25 H -0.289 1.289 26 H -0.310 1.310 27 H -0.208 1.208 28 H 0.070 0.930 29 H 0.035 0.965 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.130 0.870 33 H 0.432 0.568 34 H 0.127 0.873 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.161 0.839 38 H 0.337 0.663 39 H -0.003 1.003 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.033 0.967 43 H 0.038 0.962 44 H 0.032 0.968 45 H 0.028 0.972 46 H 0.059 0.941 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.725 -7.759 -28.415 29.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.023 4.023 3 H 0.044 0.956 4 C -0.169 4.169 5 C 0.296 3.704 6 O -0.430 6.430 7 N -0.306 5.306 8 C 0.073 3.927 9 C -0.170 4.170 10 C -0.095 4.095 11 C -0.190 4.190 12 C 0.082 3.918 13 F -0.121 7.121 14 C -0.199 4.199 15 N -0.308 5.308 16 C -0.023 4.023 17 C 0.035 3.965 18 C -0.179 4.179 19 C -0.191 4.191 20 C -0.551 4.551 21 H 0.045 0.955 22 C -0.180 4.180 23 N -0.589 5.589 24 Si 0.768 3.232 25 H -0.217 1.217 26 H -0.240 1.240 27 H -0.132 1.132 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.160 0.840 32 H 0.148 0.852 33 H 0.272 0.728 34 H 0.145 0.855 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.179 0.821 38 H 0.157 0.843 39 H 0.015 0.985 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.077 0.923 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.476 -7.611 -27.485 28.627 hybrid contribution 1.426 0.284 0.390 1.505 sum 3.901 -7.328 -27.095 28.339 Atomic orbital electron populations 1.21742 0.92725 1.02919 1.01602 1.21403 0.96641 0.95478 0.88791 0.95631 1.21966 0.88203 1.05941 1.00760 1.21641 0.91808 0.76901 0.80059 1.90802 1.70895 1.41662 1.39652 1.43444 1.03646 1.58476 1.25060 1.17512 0.83838 0.93064 0.98324 1.21447 0.95133 0.98493 1.01884 1.21153 0.93322 0.98556 0.96504 1.21377 1.02040 0.93432 1.02200 1.17539 0.89863 0.85486 0.98925 1.91495 1.79778 1.55768 1.85091 1.20957 0.92520 0.99500 1.06952 1.60826 1.33279 1.32613 1.04071 1.21517 0.97977 0.92602 0.90236 1.18468 0.92064 0.93560 0.92455 1.22012 0.98707 0.97700 0.99465 1.22139 0.98738 0.99306 0.98923 1.21236 1.42280 0.96882 0.94672 0.95485 1.25786 0.96273 1.00972 0.94935 1.70092 1.47923 1.41290 0.99618 0.86449 0.78647 0.82375 0.75690 1.21671 1.23973 1.13211 0.91069 0.94602 0.90083 0.83995 0.85200 0.72796 0.85500 0.83190 0.82946 0.82123 0.84262 0.98501 0.93011 0.92257 0.94793 0.94270 0.94885 0.95324 0.92265 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.41 71.98 0.68 -2.00 16 2 C 0.09 2.10 2.21 44.91 0.10 2.20 16 3 H 0.03 0.75 7.61 -2.39 -0.02 0.73 16 4 C -0.13 -1.83 5.30 29.85 0.16 -1.67 16 5 C 0.51 10.10 7.14 87.66 0.63 10.73 16 6 O -0.55 -16.92 12.04 -3.07 -0.04 -16.96 16 7 N -0.66 -9.28 5.33 -303.51 -1.62 -10.89 16 8 C 0.17 3.16 6.29 38.15 0.24 3.40 16 9 C -0.15 -3.35 8.70 22.40 0.19 -3.15 16 10 C -0.08 -1.47 10.04 22.24 0.22 -1.25 16 11 C -0.17 -3.03 10.02 22.34 0.22 -2.81 16 12 C 0.10 1.90 7.30 22.36 0.16 2.06 16 13 F -0.14 -2.79 17.27 44.97 0.78 -2.01 16 14 C -0.18 -2.94 9.95 22.43 0.22 -2.72 16 15 N -0.67 -21.71 5.57 -491.56 -2.74 -24.45 16 16 C 0.11 4.48 4.37 86.30 0.38 4.85 16 17 C 0.04 1.69 0.57 -52.93 -0.03 1.66 16 18 C -0.12 -5.31 7.54 71.98 0.54 -4.77 16 19 C -0.13 -6.05 7.42 71.98 0.53 -5.51 16 20 C -0.51 -30.36 8.62 25.60 0.22 -30.14 16 21 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 22 C 0.02 1.03 5.35 84.66 0.45 1.48 16 23 N -0.95 -61.63 13.96 21.45 0.30 -61.33 16 24 Si 0.94 46.88 22.75 68.60 1.56 48.44 16 25 H -0.29 -14.34 7.07 99.48 0.70 -13.64 16 26 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 27 H -0.21 -9.22 4.61 99.48 0.46 -8.76 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.03 0.91 7.45 -2.38 -0.02 0.89 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.14 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.43 2.34 8.82 -92.71 -0.82 1.52 16 34 H 0.13 3.36 6.24 -2.91 -0.02 3.34 16 35 H 0.15 2.32 8.06 -2.91 -0.02 2.29 16 36 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.16 1.79 8.06 -2.91 -0.02 1.76 16 38 H 0.34 11.21 4.54 -89.69 -0.41 10.80 16 39 H 0.00 -0.15 8.06 -2.39 -0.02 -0.17 16 40 H 0.05 2.25 7.44 -2.38 -0.02 2.23 16 41 H 0.06 2.25 7.87 -2.39 -0.02 2.23 16 42 H 0.03 1.54 4.09 -2.39 -0.01 1.53 16 43 H 0.04 1.69 8.12 -2.39 -0.02 1.67 16 44 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.03 1.32 2.36 -2.39 -0.01 1.32 16 46 H 0.06 2.31 6.57 -2.39 -0.02 2.30 16 47 H 0.26 16.09 8.31 -92.71 -0.77 15.32 16 Total: -1.00 -77.10 366.28 2.69 -74.40 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -0.48 Total: 20.41 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 4.93 Total: -27.62 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -4.06 Total: -96.67 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.04 Total: -16.96 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 1.56 Total: 48.44 kcal Total: -77.10 2.69 -74.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459738961.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.092 kcal (2) G-P(sol) polarization free energy of solvation -77.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds