Wall clock time and date at job start Sat Apr 11 2020 00:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47377 * 2 1 4 4 C 1.53001 * 109.46817 * 119.99861 * 2 1 3 5 5 C 1.50700 * 109.46697 * 184.99731 * 4 2 1 6 6 O 1.21284 * 120.00145 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00008 * 180.02562 * 5 4 2 8 8 C 1.39917 * 120.00230 * 175.31006 * 7 5 4 9 9 C 1.38912 * 120.06107 * 214.99563 * 8 7 5 10 10 C 1.38100 * 119.97886 * 179.77123 * 9 8 7 11 11 C 1.38260 * 120.09828 * 0.48248 * 10 9 8 12 12 C 1.38494 * 120.11466 * 359.79419 * 11 10 9 13 13 F 1.35102 * 119.98806 * 179.97438 * 12 11 10 14 14 C 1.38352 * 120.02030 * 359.95298 * 12 11 10 15 15 N 1.46896 * 109.46809 * 239.99617 * 2 1 3 16 16 C 1.46906 * 110.99538 * 85.00344 * 15 2 1 17 17 C 1.53006 * 109.46766 * 179.97438 * 16 15 2 18 18 C 1.52998 * 109.46973 * 299.99602 * 17 16 15 19 19 C 1.53000 * 109.47340 * 59.99900 * 17 16 15 20 20 C 1.50701 * 109.46802 * 180.02562 * 17 16 15 21 21 H 1.07995 * 120.00427 * 1.38661 * 20 17 16 22 22 C 1.37879 * 119.99556 * 181.39059 * 20 17 16 23 23 N 1.31523 * 119.99475 * 192.00866 * 22 20 17 24 24 Si 1.86797 * 120.00275 * 12.00814 * 22 20 17 25 25 H 1.48499 * 109.47051 * 84.63819 * 24 22 20 26 26 H 1.48501 * 109.47003 * 204.63787 * 24 22 20 27 27 H 1.48495 * 109.47218 * 324.63921 * 24 22 20 28 28 H 1.08998 * 109.47314 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46615 * 299.99900 * 1 2 3 30 30 H 1.08993 * 109.46982 * 59.99827 * 1 2 3 31 31 H 1.09004 * 109.46909 * 65.00372 * 4 2 1 32 32 H 1.08993 * 109.47401 * 304.99993 * 4 2 1 33 33 H 0.96999 * 119.99865 * 355.30908 * 7 5 4 34 34 H 1.08000 * 120.00747 * 359.97438 * 9 8 7 35 35 H 1.08005 * 119.94949 * 180.25649 * 10 9 8 36 36 H 1.07997 * 119.94553 * 179.76334 * 11 10 9 37 37 H 1.07995 * 120.04980 * 180.02562 * 14 12 11 38 38 H 1.00897 * 111.00141 * 208.95359 * 15 2 1 39 39 H 1.09000 * 109.47236 * 299.99594 * 16 15 2 40 40 H 1.08996 * 109.47304 * 60.00406 * 16 15 2 41 41 H 1.09006 * 109.47484 * 69.08985 * 18 17 16 42 42 H 1.09001 * 109.47151 * 189.08758 * 18 17 16 43 43 H 1.08999 * 109.47466 * 309.09280 * 18 17 16 44 44 H 1.09000 * 109.47143 * 60.00034 * 19 17 16 45 45 H 1.09001 * 109.46968 * 180.02562 * 19 17 16 46 46 H 1.09003 * 109.46824 * 299.99593 * 19 17 16 47 47 H 0.96999 * 119.99172 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3127 6 8 4.1450 -0.0204 0.4445 7 7 4.2150 -1.1805 2.3343 8 6 5.6141 -1.1672 2.3429 9 6 6.3170 -2.2442 2.8678 10 6 7.6979 -2.2313 2.8712 11 6 8.3824 -1.1434 2.3618 12 6 7.6856 -0.0650 1.8427 13 9 8.3570 0.9970 1.3461 14 6 6.3021 -0.0750 1.8322 15 7 2.0196 -0.6926 -1.1994 16 6 2.0824 0.2226 -2.3468 17 6 2.5962 -0.5330 -3.5742 18 6 3.9935 -1.0851 -3.2851 19 6 1.6472 -1.6893 -3.8954 20 6 2.6612 0.4060 -4.7511 21 1 2.3871 1.4435 -4.6301 22 6 3.0706 -0.0597 -5.9826 23 7 3.3549 0.7899 -6.9456 24 14 3.2216 -1.8971 -6.2834 25 1 1.8963 -2.4465 -6.6665 26 1 4.1941 -2.1411 -7.3789 27 1 3.6945 -2.5644 -5.0440 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.7516 -1.7715 1.2056 32 1 1.6054 -0.2618 2.1369 33 1 3.7294 -1.5968 3.0635 34 1 5.7837 -3.0928 3.2702 35 1 8.2440 -3.0708 3.2756 36 1 9.4623 -1.1343 2.3691 37 1 5.7582 0.7655 1.4271 38 1 2.9173 -1.1206 -1.0287 39 1 1.0871 0.6163 -2.5525 40 1 2.7589 1.0461 -2.1182 41 1 3.9234 -1.8815 -2.5441 42 1 4.4249 -1.4812 -4.2044 43 1 4.6276 -0.2862 -2.9009 44 1 0.6517 -1.2959 -4.1013 45 1 2.0135 -2.2278 -4.7694 46 1 1.6007 -2.3683 -3.0439 47 1 3.6432 0.4622 -7.8118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459738965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:11 Heat of formation + Delta-G solvation = -41.259162 kcal Electronic energy + Delta-G solvation = -27829.783729 eV Core-core repulsion = 23927.565704 eV Total energy + Delta-G solvation = -3902.218025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.99616 -40.87288 -38.83528 -37.28539 -35.25081 -34.86595 -31.89569 -30.95367 -30.52628 -29.55190 -27.83150 -26.05677 -25.08045 -24.22253 -23.46111 -22.77232 -21.12845 -20.09423 -18.71369 -18.42544 -17.44174 -16.62461 -16.36869 -16.05630 -15.82084 -15.68056 -15.62472 -15.30444 -14.95447 -14.55650 -14.07229 -13.88374 -13.39899 -13.13332 -12.82091 -12.77366 -12.67384 -12.47151 -12.21667 -12.12328 -11.99873 -11.81099 -11.77832 -11.71354 -11.42441 -11.25993 -10.65418 -10.53383 -10.18229 -9.95168 -9.88955 -9.85573 -9.71019 -9.04480 -8.82131 -8.52744 -8.44429 -8.28434 -7.75364 -5.97865 -3.93440 0.82790 0.96949 2.32937 2.66471 3.36346 3.39606 3.48832 3.52219 4.06039 4.38808 4.53197 4.54524 4.63118 4.73117 4.75678 4.81887 5.07562 5.18638 5.25049 5.32502 5.35970 5.61576 5.68184 5.72616 5.83266 5.91866 5.96776 6.00113 6.11458 6.13364 6.17318 6.29910 6.42791 6.46899 6.67642 6.69066 6.76420 6.84482 6.97208 7.01095 7.04623 7.16529 7.48834 7.65334 7.71876 7.82350 7.96318 8.09479 8.66457 9.06796 9.68250 11.15794 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011882 B = 0.003693 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.956631 B = 7579.462078 C = 8905.809124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.094 3.906 3 H 0.049 0.951 4 C -0.141 4.141 5 C 0.507 3.493 6 O -0.501 6.501 7 N -0.678 5.678 8 C 0.178 3.822 9 C -0.159 4.159 10 C -0.073 4.073 11 C -0.173 4.173 12 C 0.120 3.880 13 F -0.135 7.135 14 C -0.158 4.158 15 N -0.683 5.683 16 C 0.089 3.911 17 C 0.040 3.960 18 C -0.141 4.141 19 C -0.131 4.131 20 C -0.507 4.507 21 H 0.070 0.930 22 C 0.071 3.929 23 N -0.901 5.901 24 Si 0.886 3.114 25 H -0.288 1.288 26 H -0.309 1.309 27 H -0.246 1.246 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.413 0.587 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.152 0.848 38 H 0.340 0.660 39 H 0.060 0.940 40 H 0.024 0.976 41 H 0.022 0.978 42 H 0.052 0.948 43 H 0.041 0.959 44 H 0.044 0.956 45 H 0.028 0.972 46 H 0.041 0.959 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.385 -7.448 26.357 27.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.017 4.017 3 H 0.067 0.933 4 C -0.181 4.181 5 C 0.295 3.705 6 O -0.374 6.374 7 N -0.324 5.324 8 C 0.083 3.917 9 C -0.180 4.180 10 C -0.091 4.091 11 C -0.192 4.192 12 C 0.100 3.900 13 F -0.114 7.114 14 C -0.179 4.179 15 N -0.317 5.317 16 C -0.039 4.039 17 C 0.039 3.961 18 C -0.198 4.198 19 C -0.188 4.188 20 C -0.545 4.545 21 H 0.088 0.912 22 C -0.130 4.130 23 N -0.539 5.539 24 Si 0.720 3.280 25 H -0.216 1.216 26 H -0.238 1.238 27 H -0.172 1.172 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.249 0.751 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.170 0.830 38 H 0.161 0.839 39 H 0.078 0.922 40 H 0.043 0.957 41 H 0.041 0.959 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.060 0.940 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.202 -7.170 25.317 26.405 hybrid contribution 0.763 -0.443 0.109 0.889 sum 2.965 -7.612 25.426 26.706 Atomic orbital electron populations 1.21777 0.94301 1.02176 1.01295 1.21263 0.95522 0.96392 0.88555 0.93329 1.21987 0.89916 1.04716 1.01504 1.21244 0.90967 0.77767 0.80500 1.90813 1.69822 1.39132 1.37601 1.43633 1.04286 1.59355 1.25086 1.17436 0.83004 0.93107 0.98177 1.20961 0.94550 0.97415 1.05024 1.20763 0.93364 0.97457 0.97555 1.21144 1.00991 0.93983 1.03132 1.17533 0.89801 0.85124 0.97555 1.91528 1.80221 1.54487 1.85154 1.21271 0.92596 1.00147 1.03903 1.60847 1.33705 1.33500 1.03637 1.21906 0.99466 0.93115 0.89435 1.18463 0.91061 0.93299 0.93267 1.22294 0.99356 0.98542 0.99636 1.22108 0.99823 0.98572 0.98324 1.20897 1.45003 0.96539 0.92100 0.91158 1.24987 0.94264 0.97562 0.96197 1.69965 1.45455 1.34249 1.04184 0.87302 0.76759 0.87130 0.76832 1.21594 1.23829 1.17180 0.92108 0.93236 0.91953 0.87609 0.88169 0.75087 0.85032 0.84628 0.84693 0.83014 0.83944 0.92172 0.95732 0.95901 0.92885 0.94023 0.93670 0.95413 0.93990 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.42 37.16 0.35 -1.24 16 2 C 0.09 1.25 2.21 -67.71 -0.15 1.10 16 3 H 0.05 0.74 7.61 -51.93 -0.40 0.34 16 4 C -0.14 -1.30 5.30 -27.88 -0.15 -1.45 16 5 C 0.51 5.83 7.14 -10.98 -0.08 5.75 16 6 O -0.50 -8.16 12.03 5.55 0.07 -8.10 16 7 N -0.68 -5.75 5.34 -9.87 -0.05 -5.81 16 8 C 0.18 1.84 6.30 -83.70 -0.53 1.31 16 9 C -0.16 -1.28 9.97 -39.38 -0.39 -1.67 16 10 C -0.07 -0.57 10.04 -39.62 -0.40 -0.96 16 11 C -0.17 -1.66 10.02 -39.48 -0.40 -2.06 16 12 C 0.12 1.49 7.30 -39.44 -0.29 1.20 16 13 F -0.14 -1.88 17.27 2.25 0.04 -1.84 16 14 C -0.16 -2.04 8.68 -39.32 -0.34 -2.38 16 15 N -0.68 -11.70 5.40 -106.72 -0.58 -12.27 16 16 C 0.09 1.89 4.37 -3.82 -0.02 1.87 16 17 C 0.04 0.97 0.57 -155.66 -0.09 0.88 16 18 C -0.14 -3.34 7.23 37.16 0.27 -3.07 16 19 C -0.13 -3.01 7.60 37.16 0.28 -2.73 16 20 C -0.51 -14.68 8.62 -34.44 -0.30 -14.98 16 21 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 22 C 0.07 2.12 5.35 -17.81 -0.10 2.02 16 23 N -0.90 -28.53 13.96 55.43 0.77 -27.75 16 24 Si 0.89 22.98 22.75 -169.99 -3.87 19.12 16 25 H -0.29 -7.39 7.07 56.52 0.40 -6.99 16 26 H -0.31 -8.12 7.11 56.52 0.40 -7.72 16 27 H -0.25 -5.97 4.61 56.52 0.26 -5.71 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.83 7.45 -51.93 -0.39 0.45 16 31 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.41 1.85 8.82 -40.82 -0.36 1.49 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 36 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.15 2.26 6.23 -52.49 -0.33 1.93 16 38 H 0.34 6.12 4.75 -39.29 -0.19 5.93 16 39 H 0.06 1.27 7.44 -51.93 -0.39 0.89 16 40 H 0.02 0.56 8.05 -51.93 -0.42 0.14 16 41 H 0.02 0.48 7.04 -51.93 -0.37 0.11 16 42 H 0.05 1.32 4.09 -51.93 -0.21 1.10 16 43 H 0.04 1.00 8.12 -51.93 -0.42 0.58 16 44 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.03 0.66 2.36 -51.93 -0.12 0.54 16 46 H 0.04 0.86 7.60 -51.93 -0.39 0.47 16 47 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 366.37 15.07 5.52 5.52 Total: -1.00 -34.67 366.37 -7.47 -42.13 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.06 Total: 5.40 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -2.31 Total: -16.40 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.14 Total: -45.83 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.07 Total: -8.10 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -3.87 Total: 19.12 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.67 -7.47 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459738965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.875 kcal (2) G-P(sol) polarization free energy of solvation -34.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds