Wall clock time and date at job start Sat Apr 11 2020 00:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.47377 * 2 1 4 4 C 1.53001 * 109.46817 * 119.99861 * 2 1 3 5 5 C 1.50700 * 109.46697 * 184.99731 * 4 2 1 6 6 O 1.21284 * 120.00145 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00008 * 180.02562 * 5 4 2 8 8 C 1.39917 * 120.00230 * 175.31006 * 7 5 4 9 9 C 1.38912 * 120.06107 * 214.99563 * 8 7 5 10 10 C 1.38100 * 119.97886 * 179.77123 * 9 8 7 11 11 C 1.38260 * 120.09828 * 0.48248 * 10 9 8 12 12 C 1.38494 * 120.11466 * 359.79419 * 11 10 9 13 13 F 1.35102 * 119.98806 * 179.97438 * 12 11 10 14 14 C 1.38352 * 120.02030 * 359.95298 * 12 11 10 15 15 N 1.46896 * 109.46809 * 239.99617 * 2 1 3 16 16 C 1.46906 * 110.99538 * 85.00344 * 15 2 1 17 17 C 1.53006 * 109.46766 * 179.97438 * 16 15 2 18 18 C 1.52998 * 109.46973 * 299.99602 * 17 16 15 19 19 C 1.53000 * 109.47340 * 59.99900 * 17 16 15 20 20 C 1.50701 * 109.46802 * 180.02562 * 17 16 15 21 21 H 1.07995 * 120.00427 * 1.38661 * 20 17 16 22 22 C 1.37879 * 119.99556 * 181.39059 * 20 17 16 23 23 N 1.31523 * 119.99475 * 192.00866 * 22 20 17 24 24 Si 1.86797 * 120.00275 * 12.00814 * 22 20 17 25 25 H 1.48499 * 109.47051 * 84.63819 * 24 22 20 26 26 H 1.48501 * 109.47003 * 204.63787 * 24 22 20 27 27 H 1.48495 * 109.47218 * 324.63921 * 24 22 20 28 28 H 1.08998 * 109.47314 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46615 * 299.99900 * 1 2 3 30 30 H 1.08993 * 109.46982 * 59.99827 * 1 2 3 31 31 H 1.09004 * 109.46909 * 65.00372 * 4 2 1 32 32 H 1.08993 * 109.47401 * 304.99993 * 4 2 1 33 33 H 0.96999 * 119.99865 * 355.30908 * 7 5 4 34 34 H 1.08000 * 120.00747 * 359.97438 * 9 8 7 35 35 H 1.08005 * 119.94949 * 180.25649 * 10 9 8 36 36 H 1.07997 * 119.94553 * 179.76334 * 11 10 9 37 37 H 1.07995 * 120.04980 * 180.02562 * 14 12 11 38 38 H 1.00897 * 111.00141 * 208.95359 * 15 2 1 39 39 H 1.09000 * 109.47236 * 299.99594 * 16 15 2 40 40 H 1.08996 * 109.47304 * 60.00406 * 16 15 2 41 41 H 1.09006 * 109.47484 * 69.08985 * 18 17 16 42 42 H 1.09001 * 109.47151 * 189.08758 * 18 17 16 43 43 H 1.08999 * 109.47466 * 309.09280 * 18 17 16 44 44 H 1.09000 * 109.47143 * 60.00034 * 19 17 16 45 45 H 1.09001 * 109.46968 * 180.02562 * 19 17 16 46 46 H 1.09003 * 109.46824 * 299.99593 * 19 17 16 47 47 H 0.96999 * 119.99172 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3127 6 8 4.1450 -0.0204 0.4445 7 7 4.2150 -1.1805 2.3343 8 6 5.6141 -1.1672 2.3429 9 6 6.3170 -2.2442 2.8678 10 6 7.6979 -2.2313 2.8712 11 6 8.3824 -1.1434 2.3618 12 6 7.6856 -0.0650 1.8427 13 9 8.3570 0.9970 1.3461 14 6 6.3021 -0.0750 1.8322 15 7 2.0196 -0.6926 -1.1994 16 6 2.0824 0.2226 -2.3468 17 6 2.5962 -0.5330 -3.5742 18 6 3.9935 -1.0851 -3.2851 19 6 1.6472 -1.6893 -3.8954 20 6 2.6612 0.4060 -4.7511 21 1 2.3871 1.4435 -4.6301 22 6 3.0706 -0.0597 -5.9826 23 7 3.3549 0.7899 -6.9456 24 14 3.2216 -1.8971 -6.2834 25 1 1.8963 -2.4465 -6.6665 26 1 4.1941 -2.1411 -7.3789 27 1 3.6945 -2.5644 -5.0440 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.7516 -1.7715 1.2056 32 1 1.6054 -0.2618 2.1369 33 1 3.7294 -1.5968 3.0635 34 1 5.7837 -3.0928 3.2702 35 1 8.2440 -3.0708 3.2756 36 1 9.4623 -1.1343 2.3691 37 1 5.7582 0.7655 1.4271 38 1 2.9173 -1.1206 -1.0287 39 1 1.0871 0.6163 -2.5525 40 1 2.7589 1.0461 -2.1182 41 1 3.9234 -1.8815 -2.5441 42 1 4.4249 -1.4812 -4.2044 43 1 4.6276 -0.2862 -2.9009 44 1 0.6517 -1.2959 -4.1013 45 1 2.0135 -2.2278 -4.7694 46 1 1.6007 -2.3683 -3.0439 47 1 3.6432 0.4622 -7.8118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459738965.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:10 Heat of formation + Delta-G solvation = -66.360360 kcal Electronic energy + Delta-G solvation = -27830.872199 eV Core-core repulsion = 23927.565704 eV Total energy + Delta-G solvation = -3903.306494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.97078 -41.71952 -39.74334 -38.81394 -36.62625 -35.78466 -33.99152 -31.91610 -31.52878 -30.62929 -28.68133 -27.95066 -27.11808 -25.97696 -24.33327 -23.57327 -22.04879 -21.07516 -20.61352 -19.30768 -18.28451 -18.10274 -17.44182 -17.39375 -17.14973 -16.70430 -16.65947 -16.52917 -16.35965 -15.66474 -15.20181 -14.94310 -14.83383 -14.64464 -14.42255 -14.24924 -14.00527 -13.76496 -13.67499 -13.52456 -13.07547 -12.86431 -12.83454 -12.69975 -12.59376 -12.57361 -12.30041 -11.88926 -11.84890 -11.72065 -11.58517 -11.45390 -10.94803 -10.86336 -10.60530 -10.32902 -9.85075 -9.29366 -9.20808 -8.30722 -6.31087 0.07031 0.19916 1.33903 1.35964 1.48110 1.51102 1.94601 2.34419 2.63209 3.05919 3.25297 3.38704 3.62955 3.82714 3.91117 4.04869 4.14088 4.23522 4.34618 4.38343 4.43422 4.48492 4.54056 4.57780 4.71947 4.81565 4.85301 4.88089 4.91367 5.02321 5.04993 5.06560 5.10521 5.16919 5.18384 5.21738 5.27834 5.30764 5.38880 5.48813 5.57315 5.74652 5.83897 5.93423 6.21851 6.33561 6.37409 6.58877 6.76191 7.11301 7.34264 8.86965 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.011882 B = 0.003693 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.956631 B = 7579.462078 C = 8905.809124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.085 3.915 3 H 0.020 0.980 4 C -0.128 4.128 5 C 0.502 3.498 6 O -0.560 6.560 7 N -0.657 5.657 8 C 0.165 3.835 9 C -0.143 4.143 10 C -0.064 4.064 11 C -0.172 4.172 12 C 0.083 3.917 13 F -0.157 7.157 14 C -0.187 4.187 15 N -0.671 5.671 16 C 0.106 3.894 17 C 0.035 3.965 18 C -0.132 4.132 19 C -0.124 4.124 20 C -0.514 4.514 21 H 0.023 0.977 22 C 0.013 3.987 23 N -0.951 5.951 24 Si 0.947 3.053 25 H -0.277 1.277 26 H -0.314 1.314 27 H -0.214 1.214 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.134 0.866 32 H 0.142 0.858 33 H 0.435 0.565 34 H 0.172 0.828 35 H 0.177 0.823 36 H 0.152 0.848 37 H 0.118 0.882 38 H 0.337 0.663 39 H 0.053 0.947 40 H -0.010 1.010 41 H 0.053 0.947 42 H 0.043 0.957 43 H 0.021 0.979 44 H 0.043 0.957 45 H 0.021 0.979 46 H 0.073 0.927 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.551 -12.245 29.963 32.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.025 4.025 3 H 0.038 0.962 4 C -0.167 4.167 5 C 0.292 3.708 6 O -0.437 6.437 7 N -0.304 5.304 8 C 0.070 3.930 9 C -0.163 4.163 10 C -0.082 4.082 11 C -0.192 4.192 12 C 0.064 3.936 13 F -0.135 7.135 14 C -0.208 4.208 15 N -0.304 5.304 16 C -0.024 4.024 17 C 0.034 3.966 18 C -0.189 4.189 19 C -0.181 4.181 20 C -0.553 4.553 21 H 0.041 0.959 22 C -0.183 4.183 23 N -0.591 5.591 24 Si 0.777 3.223 25 H -0.204 1.204 26 H -0.244 1.244 27 H -0.138 1.138 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.152 0.848 32 H 0.160 0.840 33 H 0.276 0.724 34 H 0.190 0.810 35 H 0.194 0.806 36 H 0.170 0.830 37 H 0.136 0.864 38 H 0.157 0.843 39 H 0.072 0.928 40 H 0.008 0.992 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.041 0.959 44 H 0.062 0.938 45 H 0.040 0.960 46 H 0.091 0.909 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.336 -11.993 29.008 31.418 hybrid contribution 1.033 1.174 -0.909 1.809 sum 2.369 -10.819 28.099 30.203 Atomic orbital electron populations 1.21734 0.92452 1.03090 1.01597 1.21424 0.96823 0.95287 0.88963 0.96197 1.21966 0.88008 1.06109 1.00620 1.21739 0.91983 0.76898 0.80220 1.90825 1.71024 1.41764 1.40057 1.43422 1.03693 1.58352 1.24945 1.17626 0.83814 0.93115 0.98460 1.21416 0.94817 0.97179 1.02892 1.21293 0.93575 0.97508 0.95849 1.21459 1.02017 0.93431 1.02256 1.17946 0.90047 0.85980 0.99656 1.91461 1.80556 1.55715 1.85812 1.21187 0.93032 1.00737 1.05829 1.60839 1.33192 1.32387 1.04001 1.21518 0.97897 0.92544 0.90397 1.18458 0.92301 0.93368 0.92435 1.22165 0.98279 0.98749 0.99754 1.21999 0.98934 0.97973 0.99209 1.21233 1.44187 0.95535 0.94325 0.95874 1.25876 0.93951 1.02733 0.95765 1.70119 1.47319 1.36792 1.04903 0.86298 0.77146 0.81206 0.77655 1.20405 1.24392 1.13846 0.90745 0.90112 0.94614 0.84765 0.83997 0.72399 0.81042 0.80577 0.82994 0.86449 0.84326 0.92806 0.99159 0.92846 0.93875 0.95945 0.93819 0.96047 0.90859 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.42 71.98 0.68 -2.02 16 2 C 0.09 2.16 2.21 44.92 0.10 2.26 16 3 H 0.02 0.63 7.61 -2.39 -0.02 0.61 16 4 C -0.13 -1.89 5.30 29.85 0.16 -1.73 16 5 C 0.50 10.76 7.14 87.66 0.63 11.38 16 6 O -0.56 -18.90 12.03 -3.04 -0.04 -18.94 16 7 N -0.66 -9.35 5.34 -303.52 -1.62 -10.97 16 8 C 0.16 3.13 6.30 38.15 0.24 3.37 16 9 C -0.14 -1.70 9.97 22.40 0.22 -1.48 16 10 C -0.06 -0.74 10.04 22.24 0.22 -0.52 16 11 C -0.17 -3.06 10.02 22.34 0.22 -2.83 16 12 C 0.08 2.17 7.30 22.36 0.16 2.33 16 13 F -0.16 -4.78 17.27 44.97 0.78 -4.01 16 14 C -0.19 -5.07 8.68 22.44 0.19 -4.87 16 15 N -0.67 -22.29 5.40 -491.55 -2.65 -24.94 16 16 C 0.11 4.63 4.37 86.30 0.38 5.01 16 17 C 0.04 1.73 0.57 -52.93 -0.03 1.70 16 18 C -0.13 -6.20 7.23 71.98 0.52 -5.68 16 19 C -0.12 -5.42 7.60 71.98 0.55 -4.87 16 20 C -0.51 -31.17 8.62 25.60 0.22 -30.95 16 21 H 0.02 1.56 7.99 -2.91 -0.02 1.54 16 22 C 0.01 0.81 5.35 84.65 0.45 1.26 16 23 N -0.95 -62.87 13.96 21.45 0.30 -62.57 16 24 Si 0.95 47.35 22.75 68.60 1.56 48.91 16 25 H -0.28 -13.31 7.07 99.48 0.70 -12.60 16 26 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16 27 H -0.21 -9.60 4.61 99.48 0.46 -9.14 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.03 0.92 7.45 -2.39 -0.02 0.90 16 31 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.44 1.93 8.82 -92.71 -0.82 1.11 16 34 H 0.17 0.69 8.06 -2.91 -0.02 0.66 16 35 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 36 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.12 3.94 6.23 -2.91 -0.02 3.92 16 38 H 0.34 11.67 4.75 -89.70 -0.43 11.25 16 39 H 0.05 2.38 7.44 -2.39 -0.02 2.36 16 40 H -0.01 -0.49 8.05 -2.39 -0.02 -0.51 16 41 H 0.05 2.16 7.04 -2.38 -0.02 2.14 16 42 H 0.04 2.08 4.09 -2.39 -0.01 2.07 16 43 H 0.02 1.09 8.12 -2.39 -0.02 1.07 16 44 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.02 0.96 2.36 -2.39 -0.01 0.95 16 46 H 0.07 2.73 7.60 -2.39 -0.02 2.71 16 47 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 Total: -1.00 -84.17 366.37 2.75 -81.42 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -0.50 Total: 18.73 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 4.92 Total: -27.64 kcal Atomic # 7 Polarization: -94.51 SS G_CDS: -3.97 Total: -98.48 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.04 Total: -18.94 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.78 Total: -4.01 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.56 Total: 48.91 kcal Total: -84.17 2.75 -81.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459738965.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.064 kcal (2) G-P(sol) polarization free energy of solvation -84.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds