Wall clock time and date at job start Sat Apr 11 2020 00:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46505 * 2 1 4 4 C 1.52998 * 109.47171 * 239.99985 * 2 1 3 5 5 C 1.50694 * 109.46911 * 174.99844 * 4 2 1 6 6 O 1.21292 * 120.00541 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99910 * 179.72090 * 5 4 2 8 8 C 1.40034 * 120.00011 * 175.00463 * 7 5 4 9 9 C 1.38850 * 120.04473 * 326.54925 * 8 7 5 10 10 C 1.38110 * 119.95082 * 179.71761 * 9 8 7 11 11 C 1.38474 * 120.04966 * 0.56149 * 10 9 8 12 12 F 1.35101 * 119.95969 * 179.69424 * 11 10 9 13 13 C 1.38478 * 120.08694 * 359.71716 * 11 10 9 14 14 C 1.38115 * 120.04306 * 0.02562 * 13 11 10 15 15 N 1.46898 * 109.46900 * 119.99445 * 2 1 3 16 16 C 1.46897 * 111.00219 * 275.00172 * 15 2 1 17 17 C 1.53009 * 109.46756 * 180.02562 * 16 15 2 18 18 C 1.53001 * 109.47002 * 299.99827 * 17 16 15 19 19 C 1.52997 * 109.47112 * 59.99958 * 17 16 15 20 20 C 1.50700 * 109.46813 * 180.02562 * 17 16 15 21 21 H 1.08000 * 120.00017 * 0.02562 * 20 17 16 22 22 C 1.37871 * 120.00124 * 179.97438 * 20 17 16 23 23 N 1.31517 * 119.99898 * 0.02562 * 22 20 17 24 24 Si 1.86796 * 120.00314 * 180.02562 * 22 20 17 25 25 H 1.48501 * 109.47235 * 90.00226 * 24 22 20 26 26 H 1.48500 * 109.47189 * 210.00268 * 24 22 20 27 27 H 1.48506 * 109.46988 * 330.00136 * 24 22 20 28 28 H 1.09005 * 109.47108 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47716 * 300.00341 * 1 2 3 30 30 H 1.08998 * 109.47035 * 60.00216 * 1 2 3 31 31 H 1.08995 * 109.47219 * 55.00005 * 4 2 1 32 32 H 1.09003 * 109.46834 * 295.00117 * 4 2 1 33 33 H 0.96999 * 119.99854 * 355.00991 * 7 5 4 34 34 H 1.07994 * 120.02263 * 0.02562 * 9 8 7 35 35 H 1.08009 * 119.97615 * 180.25501 * 10 9 8 36 36 H 1.07997 * 119.97847 * 179.97438 * 13 11 10 37 37 H 1.08003 * 120.01880 * 179.97438 * 14 13 11 38 38 H 1.00904 * 110.99633 * 38.96135 * 15 2 1 39 39 H 1.09002 * 109.47179 * 299.99824 * 16 15 2 40 40 H 1.08998 * 109.46962 * 60.00377 * 16 15 2 41 41 H 1.09003 * 109.47128 * 59.99863 * 18 17 16 42 42 H 1.09000 * 109.47224 * 180.02562 * 18 17 16 43 43 H 1.09001 * 109.47024 * 300.00729 * 18 17 16 44 44 H 1.08997 * 109.47032 * 60.00228 * 19 17 16 45 45 H 1.09003 * 109.46747 * 179.97438 * 19 17 16 46 46 H 1.08993 * 109.47258 * 299.99609 * 19 17 16 47 47 H 0.96995 * 120.00397 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5418 -0.6148 -1.3127 6 8 4.1451 -0.0210 -0.4440 7 7 4.2154 -1.1848 -2.3315 8 6 5.5983 -0.9981 -2.4479 9 6 6.1740 0.2007 -2.0490 10 6 7.5389 0.3806 -2.1593 11 6 8.3317 -0.6293 -2.6781 12 9 9.6659 -0.4491 -2.7909 13 6 7.7587 -1.8235 -3.0819 14 6 6.3949 -2.0094 -2.9683 15 7 2.0196 -0.6924 1.1995 16 6 2.0824 0.2227 2.3469 17 6 2.5961 -0.5328 3.5742 18 6 1.6471 -1.6891 3.8954 19 6 3.9934 -1.0850 3.2852 20 6 2.6599 0.4059 4.7515 21 1 2.3633 1.4379 4.6360 22 6 3.0959 -0.0531 5.9763 23 7 3.4567 -1.3099 6.1171 24 14 3.1743 1.1102 7.4357 25 1 1.8803 1.0792 8.1635 26 1 4.2660 0.6860 8.3487 27 1 3.4391 2.4902 6.9551 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6054 -0.2618 -2.1369 32 1 1.7516 -1.7715 -1.2055 33 1 3.7421 -1.7242 -2.9841 34 1 5.5556 0.9901 -1.6482 35 1 7.9877 1.3115 -1.8452 36 1 8.3786 -2.6098 -3.4866 37 1 5.9483 -2.9408 -3.2838 38 1 1.4495 -1.4979 1.4100 39 1 2.7588 1.0463 2.1182 40 1 1.0869 0.6164 2.5525 41 1 1.6005 -2.3681 3.0440 42 1 2.0128 -2.2271 4.7700 43 1 0.6516 -1.2957 4.1012 44 1 4.6694 -0.2611 3.0564 45 1 4.3595 -1.6228 4.1598 46 1 3.9468 -1.7640 2.4339 47 1 3.7638 -1.6328 6.9786 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459739793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:15 Heat of formation + Delta-G solvation = -58.647758 kcal Electronic energy + Delta-G solvation = -27469.919251 eV Core-core repulsion = 23566.947200 eV Total energy + Delta-G solvation = -3902.972051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.91548 -40.50410 -38.53366 -37.13041 -34.96653 -34.52548 -31.75009 -31.26689 -30.02837 -28.86564 -27.46163 -25.46529 -25.10777 -23.85428 -23.43074 -22.71471 -20.98399 -20.04506 -18.44401 -18.03461 -17.51922 -17.02603 -16.12840 -15.86111 -15.60958 -15.38398 -15.00636 -14.57853 -14.29939 -14.23534 -13.79764 -13.63352 -13.45133 -13.23037 -12.99092 -12.77714 -12.59002 -12.39898 -12.12262 -11.93632 -11.78833 -11.43839 -11.27409 -11.06175 -10.93879 -10.74583 -10.55487 -10.48174 -10.25570 -10.08615 -9.94854 -9.66426 -9.27058 -9.20681 -8.95270 -8.52421 -8.20755 -8.09710 -7.53943 -5.83235 -3.93079 0.98635 1.11129 2.74334 2.97440 3.35775 3.42753 3.46358 3.55165 4.20313 4.49200 4.55422 4.68172 4.72135 4.81538 4.94823 5.08002 5.22953 5.35778 5.42039 5.44895 5.48726 5.53069 5.59036 5.75468 5.92073 5.97960 6.08522 6.12194 6.14252 6.25742 6.36377 6.51837 6.54914 6.83089 6.85547 6.98914 7.17954 7.29845 7.34267 7.52812 7.62416 7.84716 7.85324 7.95216 8.10673 8.27485 8.33019 8.45638 8.65820 9.08648 9.71312 11.17175 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012029 B = 0.003227 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.210867 B = 8675.493175 C =10280.114071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.094 3.906 3 H 0.081 0.919 4 C -0.125 4.125 5 C 0.512 3.488 6 O -0.476 6.476 7 N -0.686 5.686 8 C 0.151 3.849 9 C -0.094 4.094 10 C -0.130 4.130 11 C 0.073 3.927 12 F -0.144 7.144 13 C -0.133 4.133 14 C -0.125 4.125 15 N -0.670 5.670 16 C 0.083 3.917 17 C 0.070 3.930 18 C -0.131 4.131 19 C -0.111 4.111 20 C -0.504 4.504 21 H 0.051 0.949 22 C 0.065 3.935 23 N -0.885 5.885 24 Si 0.887 3.113 25 H -0.283 1.283 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.407 0.593 34 H 0.145 0.855 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.332 0.668 39 H 0.057 0.943 40 H 0.009 0.991 41 H 0.009 0.991 42 H 0.082 0.918 43 H 0.017 0.983 44 H 0.018 0.982 45 H 0.069 0.931 46 H 0.017 0.983 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.056 -1.893 -22.482 22.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.018 4.018 3 H 0.099 0.901 4 C -0.166 4.166 5 C 0.299 3.701 6 O -0.346 6.346 7 N -0.333 5.333 8 C 0.056 3.944 9 C -0.114 4.114 10 C -0.150 4.150 11 C 0.053 3.947 12 F -0.122 7.122 13 C -0.153 4.153 14 C -0.145 4.145 15 N -0.301 5.301 16 C -0.045 4.045 17 C 0.069 3.931 18 C -0.189 4.189 19 C -0.169 4.169 20 C -0.543 4.543 21 H 0.069 0.931 22 C -0.136 4.136 23 N -0.524 5.524 24 Si 0.715 3.285 25 H -0.210 1.210 26 H -0.213 1.213 27 H -0.201 1.201 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.243 0.757 34 H 0.162 0.838 35 H 0.155 0.845 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.076 0.924 40 H 0.027 0.973 41 H 0.028 0.972 42 H 0.100 0.900 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.088 0.912 46 H 0.036 0.964 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.198 -1.451 -21.804 21.885 hybrid contribution -0.926 0.381 0.740 1.245 sum 0.272 -1.070 -21.064 21.093 Atomic orbital electron populations 1.22520 0.97482 1.01915 1.02119 1.21282 0.91520 0.98442 0.90506 0.90123 1.21737 0.91024 1.03581 1.00214 1.20877 0.90486 0.78659 0.80069 1.90817 1.69356 1.39129 1.35278 1.43771 1.05788 1.53923 1.29819 1.17776 0.83893 0.93503 0.99196 1.21049 0.94352 0.96687 0.99314 1.21062 0.93714 0.99372 1.00815 1.17669 0.77450 0.95966 1.03625 1.91482 1.30765 1.95786 1.94215 1.20881 0.95214 0.96661 1.02528 1.20723 0.92605 0.98023 1.03179 1.60608 1.55700 1.09853 1.03946 1.22080 0.97321 0.94870 0.90206 1.18072 0.92565 0.92497 0.89926 1.21831 0.97758 0.98849 1.00431 1.21546 0.97653 0.98603 0.99123 1.21130 1.43207 0.95882 0.94069 0.93123 1.24877 0.95318 0.94967 0.98428 1.69842 1.44794 1.14004 1.23777 0.86684 0.77462 0.81446 0.82887 1.20957 1.21341 1.20081 0.92607 0.92059 0.92717 0.89160 0.88882 0.75746 0.83771 0.84504 0.84612 0.84846 0.84924 0.92443 0.97319 0.97222 0.89956 0.96378 0.96310 0.91217 0.96359 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 9.16 37.16 0.34 -1.72 16 2 C 0.09 1.27 2.15 -67.71 -0.15 1.13 16 3 H 0.08 1.23 7.61 -51.93 -0.40 0.83 16 4 C -0.12 -1.26 5.38 -27.89 -0.15 -1.41 16 5 C 0.51 6.56 7.43 -10.99 -0.08 6.48 16 6 O -0.48 -8.45 13.05 5.55 0.07 -8.38 16 7 N -0.69 -6.73 5.35 -9.85 -0.05 -6.78 16 8 C 0.15 1.72 6.28 -83.66 -0.53 1.20 16 9 C -0.09 -1.20 8.66 -39.40 -0.34 -1.54 16 10 C -0.13 -1.56 10.02 -39.54 -0.40 -1.96 16 11 C 0.07 0.86 7.30 -39.41 -0.29 0.57 16 12 F -0.14 -1.77 17.27 2.25 0.04 -1.73 16 13 C -0.13 -1.34 10.02 -39.54 -0.40 -1.73 16 14 C -0.12 -1.19 9.96 -39.40 -0.39 -1.58 16 15 N -0.67 -11.78 4.60 -106.73 -0.49 -12.27 16 16 C 0.08 1.79 4.38 -3.82 -0.02 1.78 16 17 C 0.07 1.75 0.57 -155.66 -0.09 1.66 16 18 C -0.13 -3.15 7.92 37.16 0.29 -2.85 16 19 C -0.11 -2.90 8.10 37.16 0.30 -2.60 16 20 C -0.50 -14.03 8.01 -34.44 -0.28 -14.30 16 21 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 22 C 0.06 1.81 5.15 -17.82 -0.09 1.71 16 23 N -0.89 -25.23 9.35 55.43 0.52 -24.71 16 24 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H 0.05 0.58 8.13 -51.93 -0.42 0.16 16 29 H 0.06 0.80 7.45 -51.93 -0.39 0.41 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.41 2.42 8.82 -40.82 -0.36 2.06 16 34 H 0.14 2.00 6.42 -52.49 -0.34 1.66 16 35 H 0.14 1.45 8.06 -52.48 -0.42 1.02 16 36 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 38 H 0.33 5.70 6.51 -39.29 -0.26 5.45 16 39 H 0.06 1.33 8.06 -51.93 -0.42 0.91 16 40 H 0.01 0.18 7.44 -51.93 -0.39 -0.20 16 41 H 0.01 0.19 6.57 -51.93 -0.34 -0.15 16 42 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.07 1.97 6.07 -51.93 -0.32 1.65 16 46 H 0.02 0.44 7.60 -51.93 -0.39 0.04 16 47 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 378.64 15.07 5.71 5.71 Total: -1.00 -32.02 378.64 -8.73 -40.75 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.25 Total: 5.91 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -2.25 Total: -15.18 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: -0.03 Total: -43.77 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.07 Total: -8.38 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.02 -8.73 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459739793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.898 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds