Wall clock time and date at job start Sat Apr 11 2020 00:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46505 * 2 1 4 4 C 1.52998 * 109.47171 * 239.99985 * 2 1 3 5 5 C 1.50694 * 109.46911 * 174.99844 * 4 2 1 6 6 O 1.21292 * 120.00541 * 0.02562 * 5 4 2 7 7 N 1.34778 * 119.99910 * 179.72090 * 5 4 2 8 8 C 1.40034 * 120.00011 * 175.00463 * 7 5 4 9 9 C 1.38850 * 120.04473 * 326.54925 * 8 7 5 10 10 C 1.38110 * 119.95082 * 179.71761 * 9 8 7 11 11 C 1.38474 * 120.04966 * 0.56149 * 10 9 8 12 12 F 1.35101 * 119.95969 * 179.69424 * 11 10 9 13 13 C 1.38478 * 120.08694 * 359.71716 * 11 10 9 14 14 C 1.38115 * 120.04306 * 0.02562 * 13 11 10 15 15 N 1.46898 * 109.46900 * 119.99445 * 2 1 3 16 16 C 1.46897 * 111.00219 * 275.00172 * 15 2 1 17 17 C 1.53009 * 109.46756 * 180.02562 * 16 15 2 18 18 C 1.53001 * 109.47002 * 299.99827 * 17 16 15 19 19 C 1.52997 * 109.47112 * 59.99958 * 17 16 15 20 20 C 1.50700 * 109.46813 * 180.02562 * 17 16 15 21 21 H 1.08000 * 120.00017 * 0.02562 * 20 17 16 22 22 C 1.37871 * 120.00124 * 179.97438 * 20 17 16 23 23 N 1.31517 * 119.99898 * 0.02562 * 22 20 17 24 24 Si 1.86796 * 120.00314 * 180.02562 * 22 20 17 25 25 H 1.48501 * 109.47235 * 90.00226 * 24 22 20 26 26 H 1.48500 * 109.47189 * 210.00268 * 24 22 20 27 27 H 1.48506 * 109.46988 * 330.00136 * 24 22 20 28 28 H 1.09005 * 109.47108 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47716 * 300.00341 * 1 2 3 30 30 H 1.08998 * 109.47035 * 60.00216 * 1 2 3 31 31 H 1.08995 * 109.47219 * 55.00005 * 4 2 1 32 32 H 1.09003 * 109.46834 * 295.00117 * 4 2 1 33 33 H 0.96999 * 119.99854 * 355.00991 * 7 5 4 34 34 H 1.07994 * 120.02263 * 0.02562 * 9 8 7 35 35 H 1.08009 * 119.97615 * 180.25501 * 10 9 8 36 36 H 1.07997 * 119.97847 * 179.97438 * 13 11 10 37 37 H 1.08003 * 120.01880 * 179.97438 * 14 13 11 38 38 H 1.00904 * 110.99633 * 38.96135 * 15 2 1 39 39 H 1.09002 * 109.47179 * 299.99824 * 16 15 2 40 40 H 1.08998 * 109.46962 * 60.00377 * 16 15 2 41 41 H 1.09003 * 109.47128 * 59.99863 * 18 17 16 42 42 H 1.09000 * 109.47224 * 180.02562 * 18 17 16 43 43 H 1.09001 * 109.47024 * 300.00729 * 18 17 16 44 44 H 1.08997 * 109.47032 * 60.00228 * 19 17 16 45 45 H 1.09003 * 109.46747 * 179.97438 * 19 17 16 46 46 H 1.08993 * 109.47258 * 299.99609 * 19 17 16 47 47 H 0.96995 * 120.00397 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5418 -0.6148 -1.3127 6 8 4.1451 -0.0210 -0.4440 7 7 4.2154 -1.1848 -2.3315 8 6 5.5983 -0.9981 -2.4479 9 6 6.1740 0.2007 -2.0490 10 6 7.5389 0.3806 -2.1593 11 6 8.3317 -0.6293 -2.6781 12 9 9.6659 -0.4491 -2.7909 13 6 7.7587 -1.8235 -3.0819 14 6 6.3949 -2.0094 -2.9683 15 7 2.0196 -0.6924 1.1995 16 6 2.0824 0.2227 2.3469 17 6 2.5961 -0.5328 3.5742 18 6 1.6471 -1.6891 3.8954 19 6 3.9934 -1.0850 3.2852 20 6 2.6599 0.4059 4.7515 21 1 2.3633 1.4379 4.6360 22 6 3.0959 -0.0531 5.9763 23 7 3.4567 -1.3099 6.1171 24 14 3.1743 1.1102 7.4357 25 1 1.8803 1.0792 8.1635 26 1 4.2660 0.6860 8.3487 27 1 3.4391 2.4902 6.9551 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6054 -0.2618 -2.1369 32 1 1.7516 -1.7715 -1.2055 33 1 3.7421 -1.7242 -2.9841 34 1 5.5556 0.9901 -1.6482 35 1 7.9877 1.3115 -1.8452 36 1 8.3786 -2.6098 -3.4866 37 1 5.9483 -2.9408 -3.2838 38 1 1.4495 -1.4979 1.4100 39 1 2.7588 1.0463 2.1182 40 1 1.0869 0.6164 2.5525 41 1 1.6005 -2.3681 3.0440 42 1 2.0128 -2.2271 4.7700 43 1 0.6516 -1.2957 4.1012 44 1 4.6694 -0.2611 3.0564 45 1 4.3595 -1.6228 4.1598 46 1 3.9468 -1.7640 2.4339 47 1 3.7638 -1.6328 6.9786 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459739793.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:14 Heat of formation + Delta-G solvation = -78.146884 kcal Electronic energy + Delta-G solvation = -27470.764797 eV Core-core repulsion = 23566.947200 eV Total energy + Delta-G solvation = -3903.817596 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -49.84537 -41.43405 -39.54214 -38.62955 -36.51737 -35.51407 -33.59586 -32.11462 -31.29850 -30.07573 -28.34066 -27.48723 -27.25221 -25.52068 -24.34864 -23.65067 -22.00276 -21.03527 -20.36487 -18.93371 -18.43675 -17.95459 -17.85465 -17.06258 -16.81156 -16.53775 -16.45605 -15.94130 -15.53166 -15.41003 -14.97782 -14.80795 -14.54273 -14.46589 -14.14356 -13.89854 -13.87462 -13.76547 -13.49292 -13.23530 -13.10720 -12.97255 -12.74150 -12.63057 -12.44395 -12.33531 -12.12777 -12.12011 -12.03756 -11.74696 -11.30549 -11.19767 -10.86735 -10.67591 -10.59235 -10.34124 -10.07206 -8.98117 -8.95672 -7.96788 -6.13613 0.09810 0.26118 1.39668 1.41689 1.50667 1.81035 2.14778 2.45620 2.69373 3.24623 3.33746 3.49784 3.73865 3.89514 3.94407 4.00088 4.27202 4.35528 4.43251 4.47270 4.59994 4.65575 4.71020 4.75741 4.80890 4.89707 4.94415 4.99581 5.06852 5.15589 5.15942 5.22097 5.24052 5.27283 5.33523 5.37225 5.43919 5.50213 5.56688 5.69454 5.77885 5.99018 6.19985 6.34191 6.38421 6.52634 6.60530 6.81604 6.97110 7.40140 7.53518 9.01257 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.012029 B = 0.003227 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.210867 B = 8675.493175 C =10280.114071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 H 0.055 0.945 4 C -0.114 4.114 5 C 0.507 3.493 6 O -0.536 6.536 7 N -0.668 5.668 8 C 0.139 3.861 9 C -0.115 4.115 10 C -0.144 4.144 11 C 0.056 3.944 12 F -0.150 7.150 13 C -0.129 4.129 14 C -0.114 4.114 15 N -0.675 5.675 16 C 0.104 3.896 17 C 0.062 3.938 18 C -0.117 4.117 19 C -0.091 4.091 20 C -0.528 4.528 21 H 0.040 0.960 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.944 3.056 25 H -0.275 1.275 26 H -0.284 1.284 27 H -0.276 1.276 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.429 0.571 34 H 0.124 0.876 35 H 0.138 0.862 36 H 0.164 0.836 37 H 0.171 0.829 38 H 0.336 0.664 39 H 0.029 0.971 40 H 0.007 0.993 41 H 0.036 0.964 42 H 0.054 0.946 43 H 0.019 0.981 44 H -0.006 1.006 45 H 0.045 0.955 46 H 0.028 0.972 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.394 -3.559 -24.631 24.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.021 4.021 3 H 0.074 0.926 4 C -0.154 4.154 5 C 0.296 3.704 6 O -0.411 6.411 7 N -0.316 5.316 8 C 0.044 3.956 9 C -0.135 4.135 10 C -0.163 4.163 11 C 0.036 3.964 12 F -0.129 7.129 13 C -0.148 4.148 14 C -0.134 4.134 15 N -0.306 5.306 16 C -0.025 4.025 17 C 0.061 3.939 18 C -0.175 4.175 19 C -0.149 4.149 20 C -0.567 4.567 21 H 0.058 0.942 22 C -0.177 4.177 23 N -0.542 5.542 24 Si 0.770 3.230 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.201 1.201 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.151 0.849 32 H 0.137 0.863 33 H 0.268 0.732 34 H 0.142 0.858 35 H 0.156 0.844 36 H 0.181 0.819 37 H 0.188 0.812 38 H 0.155 0.845 39 H 0.048 0.952 40 H 0.025 0.975 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.014 0.986 45 H 0.063 0.937 46 H 0.047 0.953 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.277 -3.144 -24.011 24.218 hybrid contribution -0.437 0.900 1.332 1.666 sum -0.714 -2.244 -22.679 22.801 Atomic orbital electron populations 1.22409 0.95227 1.03034 1.02432 1.21371 0.93258 0.97331 0.90112 0.92637 1.21735 0.88882 1.05003 0.99800 1.21451 0.91673 0.77617 0.79654 1.90819 1.70611 1.41834 1.37790 1.43574 1.05236 1.53298 1.29468 1.17975 0.84842 0.93473 0.99321 1.20991 0.94521 0.97394 1.00617 1.21140 0.93792 0.99986 1.01403 1.17891 0.77228 0.96807 1.04474 1.91461 1.31186 1.95912 1.94348 1.21246 0.95834 0.96358 1.01330 1.21085 0.92179 0.98595 1.01508 1.60495 1.56882 1.09552 1.03696 1.21604 0.96138 0.94264 0.90497 1.18113 0.92264 0.92792 0.90706 1.21624 0.97160 0.98477 1.00230 1.21322 0.97918 0.97470 0.98153 1.21461 1.43644 0.96015 0.95587 0.94156 1.25536 0.95061 0.96372 1.00716 1.69970 1.44934 1.15107 1.24206 0.85785 0.77709 0.79510 0.79958 1.20035 1.21013 1.20134 0.91009 0.94345 0.89849 0.84923 0.86343 0.73156 0.85836 0.84414 0.81887 0.81178 0.84457 0.95230 0.97476 0.94548 0.92749 0.96209 0.98640 0.93650 0.95325 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 9.16 71.98 0.66 -2.76 16 2 C 0.09 2.29 2.15 44.92 0.10 2.39 16 3 H 0.06 1.70 7.61 -2.39 -0.02 1.68 16 4 C -0.11 -1.92 5.38 29.85 0.16 -1.76 16 5 C 0.51 12.26 7.43 87.65 0.65 12.92 16 6 O -0.54 -19.51 13.05 -3.07 -0.04 -19.55 16 7 N -0.67 -11.49 5.35 -303.45 -1.62 -13.12 16 8 C 0.14 2.98 6.28 38.12 0.24 3.22 16 9 C -0.11 -3.04 8.66 22.39 0.19 -2.84 16 10 C -0.14 -3.61 10.02 22.30 0.22 -3.39 16 11 C 0.06 1.30 7.30 22.38 0.16 1.46 16 12 F -0.15 -3.69 17.27 44.97 0.78 -2.92 16 13 C -0.13 -2.30 10.02 22.30 0.22 -2.07 16 14 C -0.11 -1.85 9.96 22.39 0.22 -1.62 16 15 N -0.67 -23.23 4.60 -491.57 -2.26 -25.49 16 16 C 0.10 4.57 4.38 86.31 0.38 4.95 16 17 C 0.06 3.15 0.57 -52.93 -0.03 3.12 16 18 C -0.12 -5.60 7.92 71.98 0.57 -5.03 16 19 C -0.09 -4.85 8.10 71.98 0.58 -4.27 16 20 C -0.53 -30.13 8.01 25.60 0.21 -29.92 16 21 H 0.04 2.32 7.74 -2.91 -0.02 2.29 16 22 C 0.02 1.25 5.15 84.65 0.44 1.68 16 23 N -0.90 -52.29 9.35 21.45 0.20 -52.09 16 24 Si 0.94 45.12 29.54 68.60 2.03 47.15 16 25 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 26 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 27 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 28 H 0.07 1.22 8.13 -2.38 -0.02 1.20 16 29 H 0.04 0.94 7.45 -2.39 -0.02 0.92 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.13 1.18 8.14 -2.39 -0.02 1.17 16 32 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.43 3.39 8.82 -92.71 -0.82 2.57 16 34 H 0.12 3.74 6.42 -2.91 -0.02 3.72 16 35 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 36 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.34 10.90 6.51 -89.69 -0.58 10.31 16 39 H 0.03 1.44 8.06 -2.39 -0.02 1.42 16 40 H 0.01 0.31 7.44 -2.39 -0.02 0.29 16 41 H 0.04 1.50 6.57 -2.39 -0.02 1.48 16 42 H 0.05 2.92 6.07 -2.39 -0.01 2.91 16 43 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 44 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 45 H 0.04 2.62 6.07 -2.39 -0.01 2.61 16 46 H 0.03 1.41 7.60 -2.39 -0.02 1.39 16 47 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -73.43 378.64 3.64 -69.79 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -0.42 Total: 20.17 kcal Atomic # 6 Polarization: -28.91 SS G_CDS: 4.98 Total: -23.94 kcal Atomic # 7 Polarization: -87.02 SS G_CDS: -3.68 Total: -90.70 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.04 Total: -19.55 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.78 Total: -2.92 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -73.43 3.64 -69.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459739793.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.356 kcal (2) G-P(sol) polarization free energy of solvation -73.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds