Wall clock time and date at job start Sat Apr 11 2020 00:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47294 * 2 1 4 4 H 1.09009 * 109.47346 * 56.04789 * 3 2 1 5 5 C 1.50697 * 109.47449 * 176.05426 * 3 2 1 6 6 H 1.07995 * 120.00367 * 119.99994 * 5 3 2 7 7 C 1.37879 * 119.99427 * 299.99718 * 5 3 2 8 8 N 1.31508 * 120.00548 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99832 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46973 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46995 * 120.00133 * 9 7 5 12 12 H 1.48497 * 109.47368 * 240.00325 * 9 7 5 13 13 N 1.46904 * 109.47266 * 296.05364 * 3 2 1 14 14 C 1.46904 * 111.00095 * 154.14895 * 13 3 2 15 15 H 1.09002 * 109.46842 * 36.45265 * 14 13 3 16 16 C 1.52990 * 109.47280 * 276.44737 * 14 13 3 17 17 C 1.50701 * 109.46987 * 156.44314 * 14 13 3 18 18 O 1.21278 * 119.99860 * 0.02562 * 17 14 13 19 19 N 1.34776 * 120.00046 * 179.72623 * 17 14 13 20 20 C 1.46495 * 119.99961 * 180.28186 * 19 17 14 21 21 C 1.53004 * 109.46911 * 179.97438 * 20 19 17 22 22 C 1.50700 * 109.46874 * 179.97438 * 21 20 19 23 23 C 1.38252 * 119.97414 * 269.72428 * 22 21 20 24 24 C 1.38200 * 120.02294 * 179.72664 * 23 22 21 25 25 C 1.38459 * 119.97256 * 0.57471 * 24 23 22 26 26 F 1.35100 * 120.02331 * 179.68104 * 25 24 23 27 27 C 1.38457 * 119.95023 * 359.70109 * 25 24 23 28 28 C 1.38194 * 119.97499 * 0.02562 * 27 25 24 29 29 H 1.08998 * 109.47475 * 185.20569 * 1 2 3 30 30 H 1.09002 * 109.47075 * 305.20994 * 1 2 3 31 31 H 1.09008 * 109.46935 * 65.20678 * 1 2 3 32 32 H 1.09000 * 109.46978 * 240.00262 * 2 1 3 33 33 H 1.09000 * 109.46678 * 120.00319 * 2 1 3 34 34 H 0.96998 * 120.00477 * 179.97438 * 8 7 5 35 35 H 1.00897 * 110.99907 * 278.10319 * 13 3 2 36 36 H 1.09000 * 109.47442 * 64.46149 * 16 14 13 37 37 H 1.09000 * 109.47246 * 184.45885 * 16 14 13 38 38 H 1.09002 * 109.47591 * 304.45790 * 16 14 13 39 39 H 0.97005 * 119.99898 * 0.27089 * 19 17 14 40 40 H 1.09004 * 109.47197 * 299.99401 * 20 19 17 41 41 H 1.08997 * 109.47494 * 59.99542 * 20 19 17 42 42 H 1.08994 * 109.47401 * 299.99891 * 21 20 19 43 43 H 1.09000 * 109.46735 * 60.00133 * 21 20 19 44 44 H 1.07990 * 119.98806 * 359.97438 * 23 22 21 45 45 H 1.07994 * 120.01323 * 180.25699 * 24 23 22 46 46 H 1.08005 * 120.01043 * 179.97438 * 27 25 24 47 47 H 1.08004 * 119.98915 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6200 1.9764 0.8525 5 6 3.5438 1.4436 0.0978 6 1 4.1356 1.8929 -0.6859 7 6 4.1641 0.8710 1.1879 8 7 3.4436 0.3234 2.1421 9 14 6.0283 0.8717 1.3089 10 1 6.6014 1.5442 0.1153 11 1 6.4445 1.5999 2.5344 12 1 6.5207 -0.5277 1.3733 13 7 1.6297 2.1069 -1.2443 14 6 1.5345 3.5610 -1.0579 15 1 2.3235 3.8932 -0.3832 16 6 0.1707 3.9101 -0.4590 17 6 1.6896 4.2493 -2.3896 18 8 1.8619 3.5931 -3.3949 19 7 1.6306 5.5937 -2.4642 20 6 1.7752 6.2624 -3.7595 21 6 1.6699 7.7765 -3.5663 22 6 1.8193 8.4645 -4.8988 23 6 3.0717 8.8464 -5.3424 24 6 3.2105 9.4723 -6.5667 25 6 2.0933 9.7275 -7.3437 26 9 2.2270 10.3451 -8.5378 27 6 0.8388 9.3498 -6.8957 28 6 0.7031 8.7190 -5.6737 29 1 -0.3634 -1.0234 0.0932 30 1 -0.3633 0.5925 0.8397 31 1 -0.3633 0.4310 -0.9330 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 3.8800 -0.0798 2.9088 35 1 2.2586 1.8796 -1.9999 36 1 0.0901 3.4774 0.5382 37 1 0.0688 4.9934 -0.3943 38 1 -0.6188 3.5084 -1.0943 39 1 1.4924 6.1184 -1.6601 40 1 2.7468 6.0173 -4.1886 41 1 0.9859 5.9265 -4.4320 42 1 0.6983 8.0214 -3.1375 43 1 2.4591 8.1127 -2.8937 44 1 3.9424 8.6519 -4.7339 45 1 4.1894 9.7667 -6.9150 46 1 -0.0334 9.5488 -7.5008 47 1 -0.2754 8.4246 -5.3238 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514795955.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:20 Heat of formation + Delta-G solvation = -75.313740 kcal Electronic energy + Delta-G solvation = -26349.115179 eV Core-core repulsion = 22445.420438 eV Total energy + Delta-G solvation = -3903.694742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.22187 -39.86040 -39.32584 -36.28943 -35.31351 -33.23311 -32.49415 -31.53049 -31.34609 -29.16153 -28.09171 -25.99913 -24.43949 -23.45744 -23.13448 -22.07618 -21.49181 -19.74529 -19.36530 -18.02077 -17.03551 -16.82296 -16.40182 -16.21790 -15.89891 -15.59499 -15.37130 -14.75621 -14.49190 -14.34813 -14.12717 -13.91476 -13.68979 -13.45826 -13.03790 -12.95119 -12.73871 -12.16990 -12.06859 -11.98212 -11.93337 -11.68581 -11.54553 -11.42480 -11.26654 -11.14979 -11.09599 -10.77480 -10.63757 -10.16384 -9.66790 -9.56635 -9.50703 -9.27993 -9.02958 -8.97777 -8.91249 -8.38733 -7.29237 -6.01284 -4.14309 0.72424 0.83871 3.00054 3.10762 3.24498 3.33535 3.35274 3.37686 3.89845 4.29354 4.38287 4.41850 4.53073 4.71017 4.75311 4.87315 5.07451 5.17190 5.20226 5.24666 5.29059 5.48445 5.64303 5.64559 5.70720 5.73875 5.79696 5.84533 5.90971 6.10101 6.14346 6.38091 6.43890 6.48407 6.52735 6.53239 6.64349 6.74437 7.12055 7.20543 7.43980 7.54865 7.66229 7.77890 8.09011 8.15209 8.31244 8.50664 8.68094 8.99520 9.53667 10.98486 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.018252 B = 0.002226 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.750421 B =12574.200495 C =13535.060418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.034 0.966 5 C -0.546 4.546 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.672 5.672 14 C 0.073 3.927 15 H 0.072 0.928 16 C -0.130 4.130 17 C 0.517 3.483 18 O -0.532 6.532 19 N -0.738 5.738 20 C 0.126 3.874 21 C -0.092 4.092 22 C -0.089 4.089 23 C -0.084 4.084 24 C -0.152 4.152 25 C 0.093 3.907 26 F -0.142 7.142 27 C -0.152 4.152 28 C -0.084 4.084 29 H 0.024 0.976 30 H 0.036 0.964 31 H 0.047 0.953 32 H 0.031 0.969 33 H 0.090 0.910 34 H 0.261 0.739 35 H 0.343 0.657 36 H 0.067 0.933 37 H 0.046 0.954 38 H 0.060 0.940 39 H 0.400 0.600 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.135 0.865 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.601 19.555 -11.216 23.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.052 0.948 5 C -0.585 4.585 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.209 1.209 13 N -0.306 5.306 14 C -0.041 4.041 15 H 0.090 0.910 16 C -0.189 4.189 17 C 0.304 3.696 18 O -0.407 6.407 19 N -0.393 5.393 20 C 0.002 3.998 21 C -0.129 4.129 22 C -0.089 4.089 23 C -0.102 4.102 24 C -0.170 4.170 25 C 0.074 3.926 26 F -0.120 7.120 27 C -0.171 4.171 28 C -0.102 4.102 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.163 0.837 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.234 0.766 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.152 0.848 45 H 0.153 0.847 46 H 0.153 0.847 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.119 18.873 -11.730 23.049 hybrid contribution 2.073 0.621 0.293 2.184 sum -4.046 19.495 -11.436 22.961 Atomic orbital electron populations 1.21691 0.98951 0.98281 1.00381 1.21479 0.92140 0.99042 1.01758 1.19237 0.92591 0.91315 0.86160 0.94769 1.21931 0.92753 1.38035 1.05824 0.92854 1.24923 0.97952 0.94943 0.95627 1.69881 1.34808 1.37927 1.09614 0.86617 0.86154 0.77840 0.77852 1.19924 1.21066 1.20904 1.60927 1.56707 1.02787 1.10149 1.21342 0.98678 0.92320 0.91789 0.91025 1.21728 0.96034 0.99185 1.01926 1.21168 0.74788 0.81543 0.92126 1.90657 1.47865 1.64664 1.37554 1.46026 1.76098 1.07191 1.09949 1.21230 1.02447 0.90021 0.86144 1.20799 1.03933 0.94097 0.94118 1.19775 0.93242 0.99249 0.96677 1.20987 0.97437 0.96624 0.95158 1.21167 0.98235 1.02128 0.95509 1.17761 0.94716 0.97727 0.82424 1.91502 1.96741 1.80386 1.43404 1.21158 0.96278 1.01664 0.97974 1.20967 0.99032 0.97024 0.93201 0.95700 0.94490 0.93378 0.94990 0.89134 0.92924 0.83739 0.91392 0.93475 0.92089 0.76625 0.91523 0.91489 0.89902 0.89893 0.84757 0.84664 0.84673 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.73 37.16 0.36 -2.43 16 2 C -0.11 -2.53 5.44 -26.73 -0.15 -2.68 16 3 C 0.21 5.20 1.80 -68.87 -0.12 5.08 16 4 H 0.03 0.89 7.05 -51.92 -0.37 0.52 16 5 C -0.55 -14.57 8.30 -34.44 -0.29 -14.86 16 6 H 0.05 1.45 7.73 -52.49 -0.41 1.04 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 8 N -0.88 -24.49 11.30 55.43 0.63 -23.87 16 9 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 N -0.67 -14.41 5.42 -102.17 -0.55 -14.96 16 14 C 0.07 1.29 2.84 -68.87 -0.20 1.10 16 15 H 0.07 1.36 7.68 -51.93 -0.40 0.96 16 16 C -0.13 -1.94 9.29 37.15 0.35 -1.60 16 17 C 0.52 8.65 7.18 -10.99 -0.08 8.57 16 18 O -0.53 -10.92 15.67 5.56 0.09 -10.83 16 19 N -0.74 -8.73 5.42 -60.30 -0.33 -9.06 16 20 C 0.13 1.29 5.66 -4.04 -0.02 1.27 16 21 C -0.09 -0.63 5.46 -27.88 -0.15 -0.78 16 22 C -0.09 -0.67 5.13 -104.62 -0.54 -1.21 16 23 C -0.08 -0.63 9.70 -39.59 -0.38 -1.02 16 24 C -0.15 -1.21 10.03 -39.51 -0.40 -1.61 16 25 C 0.09 0.83 7.30 -39.42 -0.29 0.54 16 26 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 27 C -0.15 -1.18 10.03 -39.52 -0.40 -1.58 16 28 C -0.08 -0.61 9.70 -39.60 -0.38 -1.00 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.96 7.87 -51.92 -0.41 0.55 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 2.40 5.97 -51.93 -0.31 2.09 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.34 7.95 7.17 -39.29 -0.28 7.67 16 36 H 0.07 1.09 7.40 -51.93 -0.38 0.71 16 37 H 0.05 0.53 7.43 -51.93 -0.39 0.14 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.40 3.61 7.83 -40.82 -0.32 3.29 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 43 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 44 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 47 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 LS Contribution 390.50 15.07 5.88 5.88 Total: -1.00 -30.70 390.50 -9.51 -40.21 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -7.46 Total: 8.49 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -2.78 Total: -10.45 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.25 Total: -47.88 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.70 -9.51 -40.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514795955.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.106 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds