Wall clock time and date at job start Sat Apr 11 2020 00:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47118 * 2 1 4 4 H 1.09006 * 109.47440 * 304.47918 * 3 2 1 5 5 C 1.50703 * 109.46991 * 184.47917 * 3 2 1 6 6 H 1.07996 * 119.99855 * 239.99708 * 5 3 2 7 7 C 1.37879 * 119.99762 * 60.00121 * 5 3 2 8 8 N 1.31509 * 120.00087 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99498 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47500 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47155 * 120.00075 * 9 7 5 12 12 H 1.48500 * 109.46867 * 239.99627 * 9 7 5 13 13 N 1.46896 * 109.47263 * 64.47930 * 3 2 1 14 14 C 1.46906 * 111.00333 * 208.78071 * 13 3 2 15 15 H 1.09005 * 109.46202 * 31.93424 * 14 13 3 16 16 C 1.52988 * 109.47354 * 271.93317 * 14 13 3 17 17 C 1.50704 * 109.46987 * 151.92792 * 14 13 3 18 18 O 1.21278 * 120.00226 * 0.02562 * 17 14 13 19 19 N 1.34775 * 119.99356 * 180.02562 * 17 14 13 20 20 C 1.46509 * 119.99604 * 180.02562 * 19 17 14 21 21 C 1.52997 * 109.46849 * 180.02562 * 20 19 17 22 22 C 1.50704 * 109.46985 * 179.97438 * 21 20 19 23 23 C 1.38240 * 119.97282 * 269.72295 * 22 21 20 24 24 C 1.38206 * 120.02364 * 179.72411 * 23 22 21 25 25 C 1.38458 * 119.97463 * 0.56780 * 24 23 22 26 26 F 1.35093 * 120.02690 * 179.68335 * 25 24 23 27 27 C 1.38463 * 119.94580 * 359.70579 * 25 24 23 28 28 C 1.38194 * 119.97787 * 0.02562 * 27 25 24 29 29 H 1.09004 * 109.47048 * 294.94663 * 1 2 3 30 30 H 1.08995 * 109.47049 * 54.94703 * 1 2 3 31 31 H 1.08998 * 109.47063 * 174.95029 * 1 2 3 32 32 H 1.08997 * 109.46781 * 239.99516 * 2 1 3 33 33 H 1.09003 * 109.46765 * 119.99672 * 2 1 3 34 34 H 0.97000 * 119.99722 * 179.97438 * 8 7 5 35 35 H 1.00901 * 111.00167 * 84.83053 * 13 3 2 36 36 H 1.09001 * 109.47795 * 299.99720 * 16 14 13 37 37 H 1.09009 * 109.47524 * 59.99720 * 16 14 13 38 38 H 1.09001 * 109.47642 * 179.97438 * 16 14 13 39 39 H 0.97004 * 120.00562 * 0.02562 * 19 17 14 40 40 H 1.08998 * 109.47081 * 59.99736 * 20 19 17 41 41 H 1.09005 * 109.46752 * 299.99921 * 20 19 17 42 42 H 1.08998 * 109.47853 * 59.99770 * 21 20 19 43 43 H 1.09005 * 109.47021 * 299.99317 * 21 20 19 44 44 H 1.07995 * 119.99017 * 359.97417 * 23 22 21 45 45 H 1.07997 * 120.01169 * 180.25748 * 24 23 22 46 46 H 1.07999 * 120.01181 * 179.97438 * 27 25 24 47 47 H 1.08004 * 119.99100 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6126 1.9790 -0.8472 5 6 3.5430 1.4438 -0.1110 6 1 4.1415 1.8908 0.6689 7 6 4.1537 0.8746 -1.2082 8 7 3.4248 0.3300 -2.1577 9 14 6.0166 0.8770 -1.3460 10 1 6.6002 1.5466 -0.1561 11 1 6.5094 -0.5220 -1.4188 12 1 6.4212 1.6087 -2.5733 13 7 1.6407 2.1030 1.2498 14 6 1.4763 3.5493 1.0517 15 1 1.1291 3.7396 0.0361 16 6 2.8184 4.2500 1.2716 17 6 0.4655 4.0794 2.0358 18 8 -0.0653 3.3267 2.8248 19 7 0.1514 5.3901 2.0390 20 6 -0.8308 5.9056 2.9961 21 6 -1.0030 7.4116 2.7888 22 6 -2.0138 7.9418 3.7728 23 6 -3.3533 7.9813 3.4333 24 6 -4.2818 8.4620 4.3370 25 6 -3.8687 8.9151 5.5784 26 9 -4.7747 9.3911 6.4602 27 6 -2.5261 8.8802 5.9152 28 6 -1.6000 8.3940 5.0120 29 1 -0.3633 0.4335 0.9318 30 1 -0.3633 0.5902 -0.8412 31 1 -0.3633 -1.0237 -0.0905 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8545 -0.0702 -2.9298 35 1 2.3024 1.9120 1.9872 36 1 3.1657 4.0597 2.2871 37 1 3.5495 3.8666 0.5598 38 1 2.6965 5.3231 1.1242 39 1 0.5757 5.9921 1.4077 40 1 -0.4830 5.7156 4.0115 41 1 -1.7869 5.4060 2.8400 42 1 -1.3509 7.6013 1.7734 43 1 -0.0469 7.9115 2.9446 44 1 -3.6747 7.6327 2.4630 45 1 -5.3287 8.4889 4.0731 46 1 -2.2026 9.2337 6.8831 47 1 -0.5528 8.3663 5.2746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514795956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:23 Heat of formation + Delta-G solvation = -72.844264 kcal Electronic energy + Delta-G solvation = -26331.471553 eV Core-core repulsion = 22427.883896 eV Total energy + Delta-G solvation = -3903.587657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.21835 -39.79137 -39.21037 -36.38504 -35.23780 -33.23578 -32.45544 -31.52338 -31.41200 -28.95397 -27.90206 -26.15237 -24.35104 -23.45011 -22.94204 -22.29173 -21.46587 -19.78884 -19.55239 -18.01482 -16.86098 -16.80122 -16.30524 -16.25721 -15.89334 -15.51279 -15.29328 -14.82709 -14.41779 -14.20523 -13.96576 -13.90239 -13.65308 -13.33814 -13.11701 -12.91200 -12.69899 -12.43981 -12.03318 -11.91696 -11.88423 -11.79409 -11.62037 -11.34683 -11.26554 -11.12110 -10.85479 -10.82839 -10.64931 -10.15531 -9.74637 -9.51150 -9.49974 -9.22438 -8.98149 -8.87695 -8.86583 -8.40347 -7.25589 -6.02888 -4.15790 0.73313 0.84522 3.12764 3.15016 3.22758 3.32233 3.34063 3.40901 3.90473 4.30161 4.35685 4.43396 4.53994 4.72531 4.78904 4.88247 5.08750 5.18957 5.25331 5.27450 5.38180 5.49303 5.61762 5.65769 5.69640 5.74573 5.76337 5.82835 5.89807 6.11590 6.15607 6.32206 6.45750 6.49979 6.58339 6.61968 6.74650 6.79002 7.11872 7.26049 7.44310 7.56777 7.73156 7.78882 8.08535 8.10804 8.30866 8.60794 8.70974 8.97363 9.51611 10.97040 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026627 B = 0.002045 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.318902 B =13689.618106 C =14290.620456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C 0.217 3.783 4 H 0.031 0.969 5 C -0.544 4.544 6 H 0.058 0.942 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.887 3.113 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.666 5.666 14 C 0.080 3.920 15 H 0.095 0.905 16 C -0.175 4.175 17 C 0.516 3.484 18 O -0.521 6.521 19 N -0.744 5.744 20 C 0.127 3.873 21 C -0.092 4.092 22 C -0.088 4.088 23 C -0.084 4.084 24 C -0.152 4.152 25 C 0.092 3.908 26 F -0.142 7.142 27 C -0.152 4.152 28 C -0.084 4.084 29 H 0.050 0.950 30 H 0.034 0.966 31 H 0.024 0.976 32 H 0.090 0.910 33 H 0.031 0.969 34 H 0.261 0.739 35 H 0.336 0.664 36 H 0.051 0.949 37 H 0.089 0.911 38 H 0.046 0.954 39 H 0.397 0.603 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.135 0.865 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.263 18.669 9.681 23.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.110 3.890 4 H 0.049 0.951 5 C -0.583 4.583 6 H 0.076 0.924 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.715 3.285 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.295 5.295 14 C -0.035 4.035 15 H 0.112 0.888 16 C -0.234 4.234 17 C 0.302 3.698 18 O -0.395 6.395 19 N -0.399 5.399 20 C 0.003 3.997 21 C -0.129 4.129 22 C -0.089 4.089 23 C -0.102 4.102 24 C -0.170 4.170 25 C 0.073 3.927 26 F -0.120 7.120 27 C -0.171 4.171 28 C -0.103 4.103 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.108 0.892 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.154 0.846 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.065 0.935 39 H 0.231 0.769 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.152 0.848 45 H 0.153 0.847 46 H 0.153 0.847 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -11.356 17.846 10.037 23.413 hybrid contribution 1.967 0.699 -0.344 2.116 sum -9.389 18.544 9.693 22.935 Atomic orbital electron populations 1.21696 0.98965 0.98241 1.00553 1.21489 0.92165 0.99072 1.01651 1.19256 0.92887 0.91374 0.85491 0.95101 1.21934 0.92529 1.38114 1.05723 0.92387 1.24944 0.97857 0.94972 0.95783 1.69891 1.34765 1.37957 1.09494 0.86621 0.86156 0.77812 0.77864 1.19904 1.21000 1.21119 1.60521 1.53787 1.04582 1.10630 1.21330 0.92823 0.91966 0.97334 0.88753 1.22536 0.98651 0.99291 1.02935 1.21295 0.82829 0.80820 0.84860 1.90648 1.52539 1.56609 1.39669 1.46124 1.45184 1.09808 1.38776 1.21189 0.93142 0.91796 0.93592 1.20803 0.98327 0.95302 0.98517 1.19788 0.94359 0.99449 0.95301 1.20981 0.91994 0.97676 0.99562 1.21166 1.01201 1.01801 0.92871 1.17759 0.86828 0.99754 0.88326 1.91499 1.66687 1.85988 1.67872 1.21158 0.91421 1.03083 1.01410 1.20971 0.99852 0.96887 0.92542 0.93095 0.94687 0.95735 0.89194 0.94979 0.92918 0.84638 0.92979 0.89228 0.93540 0.76895 0.91699 0.91630 0.89936 0.89985 0.84755 0.84674 0.84699 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 9.73 37.16 0.36 -2.59 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.18 2.00 -68.87 -0.14 5.04 16 4 H 0.03 0.80 7.32 -51.93 -0.38 0.42 16 5 C -0.54 -13.77 7.23 -34.44 -0.25 -14.02 16 6 H 0.06 1.45 6.82 -52.49 -0.36 1.09 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.12 11.29 55.43 0.63 -23.49 16 9 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.67 -13.99 5.07 -102.17 -0.52 -14.51 16 14 C 0.08 1.40 3.01 -68.87 -0.21 1.19 16 15 H 0.09 1.67 7.33 -51.93 -0.38 1.29 16 16 C -0.18 -2.70 8.75 37.15 0.33 -2.38 16 17 C 0.52 8.57 7.22 -10.98 -0.08 8.49 16 18 O -0.52 -10.79 16.43 5.56 0.09 -10.69 16 19 N -0.74 -8.75 5.45 -60.29 -0.33 -9.08 16 20 C 0.13 1.31 5.66 -4.04 -0.02 1.28 16 21 C -0.09 -0.63 5.46 -27.88 -0.15 -0.78 16 22 C -0.09 -0.66 5.13 -104.61 -0.54 -1.20 16 23 C -0.08 -0.62 9.70 -39.59 -0.38 -1.01 16 24 C -0.15 -1.19 10.03 -39.51 -0.40 -1.59 16 25 C 0.09 0.82 7.30 -39.42 -0.29 0.53 16 26 F -0.14 -1.39 17.27 2.25 0.04 -1.35 16 27 C -0.15 -1.18 10.03 -39.51 -0.40 -1.58 16 28 C -0.08 -0.62 9.70 -39.59 -0.38 -1.00 16 29 H 0.05 1.11 7.88 -51.93 -0.41 0.70 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 2.38 5.96 -51.93 -0.31 2.07 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 35 H 0.34 7.19 8.01 -39.29 -0.31 6.88 16 36 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 37 H 0.09 1.61 6.19 -51.92 -0.32 1.29 16 38 H 0.05 0.56 7.57 -51.93 -0.39 0.16 16 39 H 0.40 3.59 7.89 -40.82 -0.32 3.27 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 0.48 8.08 -51.93 -0.42 0.07 16 43 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 LS Contribution 388.58 15.07 5.86 5.86 Total: -1.00 -30.21 388.58 -9.43 -39.65 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -7.39 Total: 8.93 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -2.79 Total: -10.62 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.22 Total: -47.08 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.21 -9.43 -39.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514795956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.199 kcal (2) G-P(sol) polarization free energy of solvation -30.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds