Wall clock time and date at job start Sat Apr 11 2020 00:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47118 * 2 1 4 4 H 1.09006 * 109.47440 * 304.47918 * 3 2 1 5 5 C 1.50703 * 109.46991 * 184.47917 * 3 2 1 6 6 H 1.07996 * 119.99855 * 239.99708 * 5 3 2 7 7 C 1.37879 * 119.99762 * 60.00121 * 5 3 2 8 8 N 1.31509 * 120.00087 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99498 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47500 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47155 * 120.00075 * 9 7 5 12 12 H 1.48500 * 109.46867 * 239.99627 * 9 7 5 13 13 N 1.46896 * 109.47263 * 64.47930 * 3 2 1 14 14 C 1.46906 * 111.00333 * 208.78071 * 13 3 2 15 15 H 1.09005 * 109.46202 * 31.93424 * 14 13 3 16 16 C 1.52988 * 109.47354 * 271.93317 * 14 13 3 17 17 C 1.50704 * 109.46987 * 151.92792 * 14 13 3 18 18 O 1.21278 * 120.00226 * 0.02562 * 17 14 13 19 19 N 1.34775 * 119.99356 * 180.02562 * 17 14 13 20 20 C 1.46509 * 119.99604 * 180.02562 * 19 17 14 21 21 C 1.52997 * 109.46849 * 180.02562 * 20 19 17 22 22 C 1.50704 * 109.46985 * 179.97438 * 21 20 19 23 23 C 1.38240 * 119.97282 * 269.72295 * 22 21 20 24 24 C 1.38206 * 120.02364 * 179.72411 * 23 22 21 25 25 C 1.38458 * 119.97463 * 0.56780 * 24 23 22 26 26 F 1.35093 * 120.02690 * 179.68335 * 25 24 23 27 27 C 1.38463 * 119.94580 * 359.70579 * 25 24 23 28 28 C 1.38194 * 119.97787 * 0.02562 * 27 25 24 29 29 H 1.09004 * 109.47048 * 294.94663 * 1 2 3 30 30 H 1.08995 * 109.47049 * 54.94703 * 1 2 3 31 31 H 1.08998 * 109.47063 * 174.95029 * 1 2 3 32 32 H 1.08997 * 109.46781 * 239.99516 * 2 1 3 33 33 H 1.09003 * 109.46765 * 119.99672 * 2 1 3 34 34 H 0.97000 * 119.99722 * 179.97438 * 8 7 5 35 35 H 1.00901 * 111.00167 * 84.83053 * 13 3 2 36 36 H 1.09001 * 109.47795 * 299.99720 * 16 14 13 37 37 H 1.09009 * 109.47524 * 59.99720 * 16 14 13 38 38 H 1.09001 * 109.47642 * 179.97438 * 16 14 13 39 39 H 0.97004 * 120.00562 * 0.02562 * 19 17 14 40 40 H 1.08998 * 109.47081 * 59.99736 * 20 19 17 41 41 H 1.09005 * 109.46752 * 299.99921 * 20 19 17 42 42 H 1.08998 * 109.47853 * 59.99770 * 21 20 19 43 43 H 1.09005 * 109.47021 * 299.99317 * 21 20 19 44 44 H 1.07995 * 119.99017 * 359.97417 * 23 22 21 45 45 H 1.07997 * 120.01169 * 180.25748 * 24 23 22 46 46 H 1.07999 * 120.01181 * 179.97438 * 27 25 24 47 47 H 1.08004 * 119.99100 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6126 1.9790 -0.8472 5 6 3.5430 1.4438 -0.1110 6 1 4.1415 1.8908 0.6689 7 6 4.1537 0.8746 -1.2082 8 7 3.4248 0.3300 -2.1577 9 14 6.0166 0.8770 -1.3460 10 1 6.6002 1.5466 -0.1561 11 1 6.5094 -0.5220 -1.4188 12 1 6.4212 1.6087 -2.5733 13 7 1.6407 2.1030 1.2498 14 6 1.4763 3.5493 1.0517 15 1 1.1291 3.7396 0.0361 16 6 2.8184 4.2500 1.2716 17 6 0.4655 4.0794 2.0358 18 8 -0.0653 3.3267 2.8248 19 7 0.1514 5.3901 2.0390 20 6 -0.8308 5.9056 2.9961 21 6 -1.0030 7.4116 2.7888 22 6 -2.0138 7.9418 3.7728 23 6 -3.3533 7.9813 3.4333 24 6 -4.2818 8.4620 4.3370 25 6 -3.8687 8.9151 5.5784 26 9 -4.7747 9.3911 6.4602 27 6 -2.5261 8.8802 5.9152 28 6 -1.6000 8.3940 5.0120 29 1 -0.3633 0.4335 0.9318 30 1 -0.3633 0.5902 -0.8412 31 1 -0.3633 -1.0237 -0.0905 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.8545 -0.0702 -2.9298 35 1 2.3024 1.9120 1.9872 36 1 3.1657 4.0597 2.2871 37 1 3.5495 3.8666 0.5598 38 1 2.6965 5.3231 1.1242 39 1 0.5757 5.9921 1.4077 40 1 -0.4830 5.7156 4.0115 41 1 -1.7869 5.4060 2.8400 42 1 -1.3509 7.6013 1.7734 43 1 -0.0469 7.9115 2.9446 44 1 -3.6747 7.6327 2.4630 45 1 -5.3287 8.4889 4.0731 46 1 -2.2026 9.2337 6.8831 47 1 -0.5528 8.3663 5.2746 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000514795956.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:22 Heat of formation + Delta-G solvation = -90.756888 kcal Electronic energy + Delta-G solvation = -26332.248303 eV Core-core repulsion = 22427.883896 eV Total energy + Delta-G solvation = -3904.364407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.90177 -40.81504 -40.07718 -38.02866 -36.28343 -34.89846 -33.57045 -33.08424 -32.07342 -30.35728 -28.88576 -27.96049 -25.38959 -24.59444 -24.00649 -23.58758 -22.13384 -21.46071 -20.99902 -18.67393 -18.59350 -17.75348 -17.43520 -17.27938 -16.78534 -16.59167 -16.27901 -16.25523 -15.55238 -15.45561 -14.92502 -14.89186 -14.80308 -14.42971 -14.35478 -14.13623 -13.88832 -13.61323 -13.58563 -13.31457 -13.15860 -12.92469 -12.65514 -12.60126 -12.54350 -12.46154 -12.35931 -12.20234 -11.97209 -11.83371 -11.57091 -11.42299 -11.02294 -10.54907 -10.37660 -10.06881 -9.95854 -9.53580 -8.96652 -7.99997 -6.20386 0.12842 0.29163 1.41045 1.45471 1.53912 1.82888 2.23193 2.44846 2.63533 3.20327 3.31195 3.72941 3.77290 3.86340 3.98981 4.03699 4.14399 4.17919 4.28645 4.36496 4.38869 4.47029 4.62623 4.63983 4.76652 4.84638 4.91149 4.96421 4.99170 5.03534 5.04919 5.17188 5.18270 5.20896 5.28115 5.41918 5.42981 5.57736 5.58032 5.58950 5.65840 5.79844 5.94151 6.11463 6.21932 6.41246 6.66047 6.87397 7.05198 7.46149 7.50272 8.97120 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.026627 B = 0.002045 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.318902 B =13689.618106 C =14290.620456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 C 0.227 3.773 4 H 0.006 0.994 5 C -0.546 4.546 6 H 0.060 0.940 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.948 3.052 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.282 1.282 13 N -0.671 5.671 14 C 0.077 3.923 15 H 0.092 0.908 16 C -0.164 4.164 17 C 0.520 3.480 18 O -0.567 6.567 19 N -0.721 5.721 20 C 0.128 3.872 21 C -0.079 4.079 22 C -0.094 4.094 23 C -0.089 4.089 24 C -0.159 4.159 25 C 0.070 3.930 26 F -0.153 7.153 27 C -0.159 4.159 28 C -0.088 4.088 29 H 0.047 0.953 30 H 0.032 0.968 31 H 0.041 0.959 32 H 0.065 0.935 33 H 0.024 0.976 34 H 0.260 0.740 35 H 0.332 0.668 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.414 0.586 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.150 0.850 45 H 0.146 0.854 46 H 0.147 0.853 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.628 20.463 9.831 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.119 3.881 4 H 0.024 0.976 5 C -0.585 4.585 6 H 0.078 0.922 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.775 3.225 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.208 1.208 13 N -0.300 5.300 14 C -0.038 4.038 15 H 0.110 0.890 16 C -0.223 4.223 17 C 0.306 3.694 18 O -0.445 6.445 19 N -0.375 5.375 20 C 0.004 3.996 21 C -0.116 4.116 22 C -0.095 4.095 23 C -0.107 4.107 24 C -0.178 4.178 25 C 0.051 3.949 26 F -0.131 7.131 27 C -0.177 4.177 28 C -0.106 4.106 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.150 0.850 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.251 0.749 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.168 0.832 45 H 0.164 0.836 46 H 0.165 0.835 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.719 19.709 10.180 24.637 hybrid contribution 1.719 0.192 -0.371 1.769 sum -9.001 19.901 9.809 23.943 Atomic orbital electron populations 1.21534 0.96981 0.99334 1.00215 1.21395 0.93922 0.99010 0.99915 1.18994 0.92102 0.91144 0.85848 0.97574 1.22183 0.93409 1.37410 1.05515 0.92186 1.25645 1.01738 0.94945 0.95712 1.70014 1.36250 1.38871 1.09982 0.85661 0.81475 0.77408 0.77947 1.19159 1.21405 1.20833 1.60412 1.53407 1.07122 1.09085 1.21395 0.94493 0.90238 0.97646 0.89046 1.22383 0.96369 1.01456 1.02109 1.21008 0.82277 0.82063 0.84012 1.90636 1.54209 1.58164 1.41471 1.45879 1.44578 1.08325 1.38748 1.21260 0.91730 0.94053 0.92526 1.20723 0.99234 0.92428 0.99230 1.19933 0.94562 0.99447 0.95561 1.21229 0.92018 0.97299 1.00141 1.21372 1.02078 1.01658 0.92688 1.18063 0.87269 1.00800 0.88778 1.91467 1.67107 1.86285 1.68279 1.21377 0.91157 1.03010 1.02200 1.21231 1.00692 0.96315 0.92323 0.93400 0.94861 0.93944 0.91697 0.95759 0.93047 0.85034 0.92903 0.91759 0.89502 0.74867 0.92675 0.93027 0.88330 0.88069 0.83204 0.83615 0.83524 0.83014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 9.73 71.98 0.70 -4.59 16 2 C -0.10 -5.07 5.45 30.59 0.17 -4.90 16 3 C 0.23 10.99 2.00 44.17 0.09 11.07 16 4 H 0.01 0.34 7.32 -2.38 -0.02 0.32 16 5 C -0.55 -27.75 7.23 25.60 0.19 -27.56 16 6 H 0.06 2.97 6.82 -2.91 -0.02 2.95 16 7 C 0.02 1.02 5.29 84.66 0.45 1.47 16 8 N -0.91 -50.44 11.29 21.45 0.24 -50.20 16 9 Si 0.95 41.66 29.54 68.60 2.03 43.69 16 10 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 13 N -0.67 -28.30 5.07 -477.16 -2.42 -30.72 16 14 C 0.08 2.60 3.01 44.17 0.13 2.74 16 15 H 0.09 3.16 7.33 -2.38 -0.02 3.15 16 16 C -0.16 -4.76 8.75 71.98 0.63 -4.13 16 17 C 0.52 16.60 7.22 87.66 0.63 17.23 16 18 O -0.57 -23.27 16.43 -3.02 -0.05 -23.32 16 19 N -0.72 -15.11 5.45 -463.04 -2.52 -17.63 16 20 C 0.13 2.35 5.66 86.38 0.49 2.84 16 21 C -0.08 -0.81 5.46 29.85 0.16 -0.65 16 22 C -0.09 -1.19 5.13 -19.86 -0.10 -1.30 16 23 C -0.09 -1.15 9.70 22.26 0.22 -0.94 16 24 C -0.16 -2.35 10.03 22.31 0.22 -2.12 16 25 C 0.07 1.20 7.30 22.38 0.16 1.36 16 26 F -0.15 -2.98 17.27 44.97 0.78 -2.20 16 27 C -0.16 -2.29 10.03 22.31 0.22 -2.07 16 28 C -0.09 -1.10 9.70 22.26 0.22 -0.88 16 29 H 0.05 2.07 7.88 -2.38 -0.02 2.05 16 30 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.06 3.52 5.96 -2.39 -0.01 3.50 16 33 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 35 H 0.33 14.29 8.01 -89.69 -0.72 13.57 16 36 H 0.05 1.52 8.12 -2.39 -0.02 1.50 16 37 H 0.06 2.23 6.19 -2.38 -0.01 2.21 16 38 H 0.09 1.78 7.57 -2.39 -0.02 1.76 16 39 H 0.41 5.94 7.89 -92.71 -0.73 5.21 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 42 H 0.10 0.76 8.08 -2.39 -0.02 0.74 16 43 H 0.10 0.72 8.09 -2.38 -0.02 0.70 16 44 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 45 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 46 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 47 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -66.15 388.58 2.16 -63.99 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -0.47 Total: 28.83 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 4.58 Total: -12.43 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -4.70 Total: -98.55 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.05 Total: -23.32 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.78 Total: -2.20 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -66.15 2.16 -63.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514795956.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.771 kcal (2) G-P(sol) polarization free energy of solvation -66.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds