Wall clock time and date at job start Sat Apr 11 2020 00:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46698 * 2 1 4 4 H 1.09009 * 109.46612 * 185.15840 * 3 2 1 5 5 C 1.50698 * 109.47260 * 305.15239 * 3 2 1 6 6 H 1.08005 * 119.99765 * 120.00539 * 5 3 2 7 7 C 1.37874 * 120.00347 * 300.00944 * 5 3 2 8 8 N 1.31514 * 119.99808 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00032 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46976 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46848 * 119.99641 * 9 7 5 12 12 H 1.48500 * 109.47007 * 239.99685 * 9 7 5 13 13 N 1.46899 * 109.47365 * 65.15984 * 3 2 1 14 14 C 1.46895 * 111.00049 * 86.01478 * 13 3 2 15 15 H 1.09002 * 109.47154 * 323.03196 * 14 13 3 16 16 C 1.53004 * 109.47419 * 83.03543 * 14 13 3 17 17 C 1.50706 * 109.47018 * 203.03408 * 14 13 3 18 18 O 1.21272 * 119.99743 * 0.02562 * 17 14 13 19 19 N 1.34776 * 119.99902 * 180.02562 * 17 14 13 20 20 C 1.46494 * 120.00000 * 180.02562 * 19 17 14 21 21 C 1.52996 * 109.47581 * 179.97438 * 20 19 17 22 22 C 1.50697 * 109.47471 * 179.97438 * 21 20 19 23 23 C 1.38238 * 119.97386 * 269.72700 * 22 21 20 24 24 C 1.38204 * 120.02505 * 179.72756 * 23 22 21 25 25 C 1.38452 * 119.97450 * 0.56757 * 24 23 22 26 26 F 1.35101 * 120.02760 * 179.68716 * 25 24 23 27 27 C 1.38461 * 119.94740 * 359.70596 * 25 24 23 28 28 C 1.38199 * 119.97422 * 359.97438 * 27 25 24 29 29 H 1.08994 * 109.46955 * 174.83690 * 1 2 3 30 30 H 1.09004 * 109.47171 * 294.83694 * 1 2 3 31 31 H 1.09005 * 109.47196 * 54.83964 * 1 2 3 32 32 H 1.08999 * 109.46864 * 119.99342 * 2 1 3 33 33 H 1.08991 * 109.46930 * 239.99697 * 2 1 3 34 34 H 0.96998 * 119.99803 * 180.02562 * 8 7 5 35 35 H 1.00901 * 110.99978 * 322.05758 * 13 3 2 36 36 H 1.09000 * 109.47361 * 179.97438 * 16 14 13 37 37 H 1.09003 * 109.46930 * 299.99751 * 16 14 13 38 38 H 1.09002 * 109.47242 * 59.99706 * 16 14 13 39 39 H 0.96999 * 120.00023 * 359.97438 * 19 17 14 40 40 H 1.08996 * 109.47130 * 300.00217 * 20 19 17 41 41 H 1.09005 * 109.47374 * 59.99585 * 20 19 17 42 42 H 1.09002 * 109.46920 * 299.99740 * 21 20 19 43 43 H 1.08998 * 109.47304 * 59.99341 * 21 20 19 44 44 H 1.07999 * 119.98794 * 359.97438 * 23 22 21 45 45 H 1.08000 * 120.01214 * 180.25326 * 24 23 22 46 46 H 1.08003 * 120.01174 * 179.97438 * 27 25 24 47 47 H 1.08007 * 119.98468 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1261 1.4439 -0.0924 5 6 1.4361 2.1888 -1.1617 6 1 0.8269 3.0628 -0.9841 7 6 1.6612 1.7559 -2.4512 8 7 2.4033 0.6919 -2.6674 9 14 0.9120 2.6806 -3.8911 10 1 0.1249 3.8330 -3.3836 11 1 1.9947 3.1731 -4.7802 12 1 0.0206 1.7703 -4.6540 13 7 1.6546 2.0982 1.2568 14 6 2.6445 1.8391 2.3108 15 1 3.0206 0.8206 2.2136 16 6 3.8052 2.8266 2.1743 17 6 1.9968 2.0087 3.6609 18 8 0.8258 2.3147 3.7375 19 7 2.7189 1.8203 4.7832 20 6 2.0892 1.9846 6.0956 21 6 3.1202 1.7149 7.1934 22 6 2.4725 1.8846 8.5435 23 6 2.4838 3.1195 9.1647 24 6 1.8852 3.2776 10.4003 25 6 1.2844 2.1959 11.0213 26 9 0.7045 2.3478 12.2321 27 6 1.2786 0.9581 10.4008 28 6 1.8720 0.8039 9.1622 29 1 -0.3633 -1.0234 -0.0925 30 1 -0.3634 0.4317 0.9326 31 1 -0.3634 0.5918 -0.8402 32 1 1.8933 -0.5137 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 2.5620 0.3875 -3.5747 35 1 0.7327 1.8090 1.5476 36 1 4.5395 2.6347 2.9566 37 1 4.2737 2.7039 1.1978 38 1 3.4291 3.8451 2.2715 39 1 3.6554 1.5751 4.7219 40 1 1.7123 3.0027 6.1929 41 1 1.2628 1.2805 6.1929 42 1 3.4966 0.6966 7.0961 43 1 3.9468 2.4187 7.0964 44 1 2.9571 3.9620 8.6824 45 1 1.8906 4.2435 10.8835 46 1 0.8106 0.1135 10.8845 47 1 1.8673 -0.1614 8.6778 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000514795958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:31 Heat of formation + Delta-G solvation = -70.273902 kcal Electronic energy + Delta-G solvation = -26336.138024 eV Core-core repulsion = 22432.661825 eV Total energy + Delta-G solvation = -3903.476198 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.24570 -39.92660 -39.39893 -36.54339 -35.39720 -33.34124 -32.55088 -31.55871 -31.14460 -28.88647 -27.97037 -26.11193 -24.45344 -23.48725 -23.39304 -22.50047 -21.53777 -20.04562 -18.92574 -18.05140 -17.24179 -16.85346 -16.42115 -15.94054 -15.72187 -15.66778 -15.44967 -14.81595 -14.62312 -14.40216 -14.19846 -13.94476 -13.69735 -13.30237 -13.09093 -12.92810 -12.71248 -12.56286 -12.13817 -12.03377 -11.97520 -11.81818 -11.73669 -11.47307 -11.30214 -11.13916 -10.91334 -10.69915 -10.48165 -9.97318 -9.86600 -9.54762 -9.53566 -9.39824 -9.05659 -8.96562 -8.91543 -8.32456 -7.22851 -5.96290 -3.96620 0.69439 0.80985 2.90163 3.06300 3.28835 3.33525 3.41742 3.48101 3.87185 4.26198 4.37581 4.46978 4.50229 4.66982 4.70068 4.84047 5.03974 5.08925 5.19003 5.19917 5.35909 5.45205 5.59612 5.60396 5.61678 5.71010 5.72526 5.77628 5.82604 6.06057 6.10770 6.28618 6.37956 6.42604 6.43149 6.47775 6.59257 6.65747 6.93579 7.25085 7.29310 7.52517 7.57064 7.71841 7.92345 8.29024 8.41368 8.58761 8.64660 9.10066 9.66865 11.11060 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.031563 B = 0.001943 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.895662 B =14406.404766 C =14545.630623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.146 4.146 3 C 0.215 3.785 4 H 0.035 0.965 5 C -0.484 4.484 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.668 5.668 14 C 0.068 3.932 15 H 0.059 0.941 16 C -0.131 4.131 17 C 0.515 3.485 18 O -0.530 6.530 19 N -0.738 5.738 20 C 0.125 3.875 21 C -0.092 4.092 22 C -0.089 4.089 23 C -0.084 4.084 24 C -0.152 4.152 25 C 0.093 3.907 26 F -0.141 7.141 27 C -0.152 4.152 28 C -0.084 4.084 29 H 0.023 0.977 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.008 0.992 33 H 0.094 0.906 34 H 0.258 0.742 35 H 0.342 0.658 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.400 0.600 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.135 0.865 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.583 -0.071 24.894 25.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.053 0.947 5 C -0.523 4.523 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.303 5.303 14 C -0.046 4.046 15 H 0.077 0.923 16 C -0.189 4.189 17 C 0.302 3.698 18 O -0.404 6.404 19 N -0.392 5.392 20 C 0.001 3.999 21 C -0.129 4.129 22 C -0.090 4.090 23 C -0.102 4.102 24 C -0.170 4.170 25 C 0.074 3.926 26 F -0.120 7.120 27 C -0.170 4.170 28 C -0.102 4.102 29 H 0.042 0.958 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.026 0.974 33 H 0.112 0.888 34 H 0.068 0.932 35 H 0.164 0.836 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.234 0.766 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.152 0.848 45 H 0.153 0.847 46 H 0.153 0.847 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.007 0.673 24.667 24.999 hybrid contribution -0.230 -0.697 -0.330 0.805 sum 3.778 -0.024 24.337 24.628 Atomic orbital electron populations 1.21609 0.97588 0.98693 1.01038 1.22124 0.95208 1.01142 1.00067 1.19304 0.96038 0.88535 0.85400 0.94708 1.21088 1.30273 1.11453 0.89488 0.91854 1.24906 0.95604 0.95205 0.98721 1.69887 1.39205 1.24069 1.20548 0.86510 0.78949 0.79926 0.82473 1.19711 1.21248 1.21276 1.60848 1.03899 1.63224 1.02323 1.21451 0.95486 0.98887 0.88781 0.92336 1.21724 0.95561 0.99501 1.02125 1.21129 0.86839 0.75574 0.86250 1.90670 1.16536 1.46002 1.87229 1.46026 1.14559 1.73143 1.05474 1.21244 0.95302 1.02265 0.81078 1.20793 0.98007 1.03679 0.90438 1.19762 0.99422 0.93584 0.96243 1.20974 0.98035 0.97229 0.93951 1.21166 1.00499 0.98571 0.96808 1.17763 0.97755 0.94988 0.82073 1.91504 1.82233 1.96404 1.41868 1.21167 1.02666 0.96459 0.96757 1.20975 0.96155 0.99156 0.93931 0.95793 0.95174 0.91161 0.97361 0.88803 0.93228 0.83639 0.93525 0.90908 0.91910 0.76620 0.91391 0.91504 0.89922 0.89876 0.84759 0.84651 0.84660 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.40 37.16 0.35 -2.57 16 2 C -0.15 -3.41 5.49 -26.73 -0.15 -3.55 16 3 C 0.21 5.22 2.14 -68.87 -0.15 5.08 16 4 H 0.04 0.91 6.97 -51.92 -0.36 0.55 16 5 C -0.48 -13.07 7.25 -34.44 -0.25 -13.32 16 6 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 7 C 0.06 1.52 5.28 -17.82 -0.09 1.42 16 8 N -0.90 -24.95 11.38 55.43 0.63 -24.32 16 9 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.67 -14.51 5.90 -102.17 -0.60 -15.12 16 14 C 0.07 1.17 2.84 -68.86 -0.20 0.98 16 15 H 0.06 0.99 7.17 -51.93 -0.37 0.62 16 16 C -0.13 -1.98 9.27 37.16 0.34 -1.63 16 17 C 0.52 8.31 7.18 -10.98 -0.08 8.23 16 18 O -0.53 -10.61 15.68 5.56 0.09 -10.53 16 19 N -0.74 -8.19 5.45 -60.30 -0.33 -8.52 16 20 C 0.13 1.21 5.66 -4.05 -0.02 1.19 16 21 C -0.09 -0.57 5.46 -27.89 -0.15 -0.73 16 22 C -0.09 -0.63 5.13 -104.62 -0.54 -1.17 16 23 C -0.08 -0.58 9.70 -39.59 -0.38 -0.97 16 24 C -0.15 -1.14 10.03 -39.51 -0.40 -1.53 16 25 C 0.09 0.80 7.30 -39.42 -0.29 0.51 16 26 F -0.14 -1.35 17.27 2.25 0.04 -1.31 16 27 C -0.15 -1.14 10.03 -39.51 -0.40 -1.54 16 28 C -0.08 -0.59 9.70 -39.59 -0.38 -0.97 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.03 0.63 6.63 -51.93 -0.34 0.28 16 31 H 0.07 1.69 6.85 -51.93 -0.36 1.33 16 32 H 0.01 0.17 7.43 -51.93 -0.39 -0.22 16 33 H 0.09 2.44 6.23 -51.93 -0.32 2.11 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.34 7.74 5.43 -39.29 -0.21 7.53 16 36 H 0.05 0.51 7.56 -51.93 -0.39 0.12 16 37 H 0.07 1.22 7.30 -51.93 -0.38 0.84 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.40 3.29 7.89 -40.82 -0.32 2.97 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 43 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 44 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 45 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 46 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 47 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 LS Contribution 384.94 15.07 5.80 5.80 Total: -1.00 -31.15 384.94 -9.39 -40.54 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -7.22 Total: 7.68 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -2.78 Total: -10.58 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: -0.30 Total: -47.96 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.15 -9.39 -40.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000514795958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.730 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds