Wall clock time and date at job start Sat Apr 11 2020 00:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46863 * 2 1 4 4 C 1.52999 * 109.46921 * 119.99679 * 2 1 3 5 5 C 1.50702 * 109.47522 * 295.00468 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52999 * 109.47239 * 239.99874 * 2 1 3 14 14 N 1.46497 * 109.47479 * 65.00221 * 13 2 1 15 15 C 1.39981 * 120.00230 * 179.97438 * 14 13 2 16 16 C 1.38852 * 119.99368 * 359.72772 * 15 14 13 17 17 C 1.38146 * 120.03673 * 179.72871 * 16 15 14 18 18 C 1.38780 * 120.01902 * 0.53839 * 17 16 15 19 19 N 1.40178 * 120.00599 * 179.74916 * 18 17 16 20 20 C 1.47016 * 110.99688 * 63.62094 * 19 18 17 21 21 C 1.53099 * 109.25723 * 177.61132 * 20 19 18 22 22 O 1.43014 * 109.26248 * 56.84195 * 21 20 19 23 23 C 1.43021 * 113.73791 * 301.33263 * 22 21 20 24 24 C 1.47009 * 111.00142 * 299.98323 * 19 18 17 25 25 C 1.39034 * 119.99127 * 359.73545 * 18 17 16 26 26 F 1.35098 * 120.02019 * 179.97438 * 25 18 17 27 27 C 1.38264 * 119.96187 * 359.97438 * 25 18 17 28 28 H 1.09001 * 109.47667 * 300.00120 * 1 2 3 29 29 H 1.09008 * 109.47037 * 60.00507 * 1 2 3 30 30 H 1.09007 * 109.47198 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47527 * 175.00066 * 4 2 1 32 32 H 1.09001 * 109.47054 * 55.00157 * 4 2 1 33 33 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 34 34 H 1.09004 * 109.46992 * 185.00306 * 13 2 1 35 35 H 1.08999 * 109.47129 * 304.99562 * 13 2 1 36 36 H 0.97005 * 119.99255 * 359.97438 * 14 13 2 37 37 H 1.07999 * 119.98722 * 359.97128 * 16 15 14 38 38 H 1.07993 * 119.99370 * 180.25052 * 17 16 15 39 39 H 1.09006 * 109.50151 * 297.53908 * 20 19 18 40 40 H 1.08990 * 109.50885 * 57.67204 * 20 19 18 41 41 H 1.09003 * 109.50030 * 296.90730 * 21 20 19 42 42 H 1.08998 * 109.50574 * 176.78242 * 21 20 19 43 43 H 1.08989 * 109.50573 * 298.73405 * 23 22 21 44 44 H 1.09004 * 109.54125 * 178.62267 * 23 22 21 45 45 H 1.09006 * 109.50789 * 302.32919 * 24 19 18 46 46 H 1.09003 * 109.50623 * 62.45300 * 24 19 18 47 47 H 1.07997 * 120.01121 * 179.97438 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4767 6 1 1.0804 0.9746 2.3756 7 6 1.9930 -0.4017 3.7283 8 7 1.6498 0.2804 4.7991 9 14 2.9635 -1.9882 3.9029 10 1 2.0242 -3.1318 4.0269 11 1 3.8201 -2.1789 2.7051 12 1 3.8174 -1.9153 5.1156 13 6 2.0400 -0.7213 -1.2492 14 7 1.6525 0.0353 -2.4424 15 6 2.0099 -0.4305 -3.7131 16 6 2.7365 -1.6067 -3.8423 17 6 3.0848 -2.0701 -5.0963 18 6 2.7183 -1.3545 -6.2275 19 7 3.0764 -1.8223 -7.4994 20 6 2.4363 -3.1146 -7.7849 21 6 2.8057 -3.5588 -9.2028 22 8 4.2295 -3.6217 -9.3216 23 6 4.8853 -2.3799 -9.0509 24 6 4.5370 -1.9239 -7.6315 25 6 1.9956 -0.1737 -6.0990 26 9 1.6390 0.5236 -7.1998 27 6 1.6422 0.2865 -4.8440 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 3.1262 -0.7995 1.2057 32 1 1.6053 -1.7197 1.2952 33 1 1.9007 -0.0402 5.6795 34 1 3.1263 -0.7995 -1.2055 35 1 1.6054 -1.7198 -1.2951 36 1 1.1483 0.8590 -2.3517 37 1 3.0262 -2.1616 -2.9623 38 1 3.6464 -2.9871 -5.1961 39 1 2.7837 -3.8590 -7.0683 40 1 1.3543 -3.0101 -7.7065 41 1 2.4117 -2.8417 -9.9229 42 1 2.3802 -4.5431 -9.3983 43 1 4.5518 -1.6286 -9.7666 44 1 5.9640 -2.5109 -9.1367 45 1 4.9884 -0.9501 -7.4410 46 1 4.9179 -2.6491 -6.9124 47 1 1.0812 1.2038 -4.7433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876859254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:23 Heat of formation + Delta-G solvation = -82.380772 kcal Electronic energy + Delta-G solvation = -26747.972373 eV Core-core repulsion = 22843.971181 eV Total energy + Delta-G solvation = -3904.001191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.76746 -41.21675 -39.93972 -38.24529 -36.74251 -34.99598 -33.75674 -32.16651 -31.62947 -30.37373 -29.23016 -27.63826 -26.38917 -24.97534 -24.53160 -23.99062 -22.29684 -21.28047 -20.87596 -19.01940 -18.87401 -18.18686 -17.60091 -17.17356 -16.60616 -16.59221 -16.45653 -16.13341 -15.97215 -15.85707 -15.84960 -15.46462 -15.15269 -14.94626 -14.75549 -14.50358 -14.11588 -13.90200 -13.56795 -13.48735 -13.20343 -13.07080 -12.85712 -12.66241 -12.52140 -12.46526 -12.34927 -12.16929 -11.73440 -11.62609 -11.55657 -11.36092 -11.11678 -10.81793 -10.73961 -10.72959 -9.79637 -9.56646 -8.39438 -8.26086 -6.28931 0.23936 0.35249 1.37477 1.39340 1.50162 2.35091 2.37888 2.63483 2.64344 2.94897 3.09692 3.42371 3.78668 3.90852 3.96294 4.01924 4.14336 4.15862 4.16240 4.22526 4.23834 4.29959 4.40912 4.49829 4.57607 4.66745 4.71312 4.73290 4.80019 4.80156 4.88905 4.91931 4.96697 5.04639 5.05777 5.22663 5.24974 5.35761 5.36065 5.48512 5.61271 5.65360 5.70365 5.82022 6.15625 6.16169 6.31546 6.38116 6.75348 6.79249 7.34874 8.90376 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.022715 B = 0.002239 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.384909 B =12502.014005 C =13303.820959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.081 4.081 3 H 0.059 0.941 4 C -0.006 4.006 5 C -0.519 4.519 6 H 0.036 0.964 7 C 0.000 4.000 8 N -0.954 5.954 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.242 1.242 12 H -0.290 1.290 13 C 0.136 3.864 14 N -0.733 5.733 15 C 0.246 3.754 16 C -0.203 4.203 17 C -0.064 4.064 18 C -0.025 4.025 19 N -0.500 5.500 20 C 0.023 3.977 21 C 0.064 3.936 22 O -0.402 6.402 23 C 0.064 3.936 24 C 0.022 3.978 25 C 0.158 3.842 26 F -0.139 7.139 27 C -0.236 4.236 28 H 0.036 0.964 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.022 0.978 32 H 0.022 0.978 33 H 0.264 0.736 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.406 0.594 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.118 0.882 43 H 0.060 0.940 44 H 0.118 0.882 45 H 0.087 0.913 46 H 0.048 0.952 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.033 -7.374 -28.978 30.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.100 4.100 3 H 0.078 0.922 4 C -0.044 4.044 5 C -0.557 4.557 6 H 0.054 0.946 7 C -0.197 4.197 8 N -0.595 5.595 9 Si 0.771 3.229 10 H -0.194 1.194 11 H -0.165 1.165 12 H -0.216 1.216 13 C 0.012 3.988 14 N -0.360 5.360 15 C 0.139 3.861 16 C -0.226 4.226 17 C -0.085 4.085 18 C -0.121 4.121 19 N -0.222 5.222 20 C -0.104 4.104 21 C -0.012 4.012 22 O -0.320 6.320 23 C -0.012 4.012 24 C -0.105 4.105 25 C 0.137 3.863 26 F -0.118 7.118 27 C -0.261 4.261 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.242 0.758 37 H 0.153 0.847 38 H 0.156 0.844 39 H 0.066 0.934 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.136 0.864 43 H 0.078 0.922 44 H 0.136 0.864 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.026 -7.298 -29.081 30.252 hybrid contribution -0.013 0.014 1.513 1.513 sum 4.013 -7.284 -27.569 28.795 Atomic orbital electron populations 1.21669 0.94941 1.01433 1.00628 1.21070 0.96383 0.99313 0.93221 0.92205 1.19529 0.96365 0.95851 0.92630 1.21430 1.34387 1.08690 0.91164 0.94606 1.26012 0.97051 1.00985 0.95609 1.70073 1.49074 1.41611 0.98772 0.85709 0.79346 0.79487 0.78407 1.19400 1.16511 1.21605 1.21418 0.99303 0.95139 0.82935 1.44933 1.60921 1.28182 1.01988 1.17656 0.91381 0.92042 0.84975 1.20775 1.05498 0.97894 0.98431 1.21269 0.97073 0.98853 0.91263 1.18460 1.06983 0.97010 0.89675 1.59758 1.09200 1.28158 1.25105 1.22898 1.00381 0.88871 0.98248 1.22785 0.80896 1.03067 0.94489 1.87965 1.19938 1.33529 1.90603 1.22783 0.98697 0.85824 0.93936 1.22901 0.86795 1.02158 0.98600 1.17296 0.96751 0.90164 0.82077 1.91452 1.89797 1.78093 1.52413 1.20486 1.11186 1.04678 0.89701 0.94509 0.91852 0.93020 0.95977 0.95965 0.92743 0.91921 0.91480 0.75771 0.84662 0.84357 0.93420 0.89511 0.92172 0.86432 0.92178 0.86435 0.89493 0.93367 0.83831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 8.88 71.98 0.64 -3.56 16 2 C -0.08 -2.72 2.37 -10.80 -0.03 -2.74 16 3 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 4 C -0.01 -0.25 3.52 29.85 0.10 -0.14 16 5 C -0.52 -28.29 8.96 25.60 0.23 -28.06 16 6 H 0.04 2.16 7.30 -2.91 -0.02 2.14 16 7 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 8 N -0.95 -58.89 13.96 21.45 0.30 -58.59 16 9 Si 0.95 42.74 27.47 68.60 1.88 44.62 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 12 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 13 C 0.14 3.53 4.30 86.38 0.37 3.90 16 14 N -0.73 -16.61 5.47 -339.25 -1.86 -18.47 16 15 C 0.25 5.46 6.66 38.13 0.25 5.72 16 16 C -0.20 -4.24 9.31 22.39 0.21 -4.03 16 17 C -0.06 -1.24 8.62 22.38 0.19 -1.04 16 18 C -0.02 -0.52 4.75 38.13 0.18 -0.34 16 19 N -0.50 -9.56 4.54 -693.80 -3.15 -12.70 16 20 C 0.02 0.37 5.41 86.31 0.47 0.83 16 21 C 0.06 0.90 7.01 72.02 0.50 1.41 16 22 O -0.40 -6.91 10.83 -148.98 -1.61 -8.52 16 23 C 0.06 0.90 7.01 72.01 0.50 1.41 16 24 C 0.02 0.36 5.37 86.32 0.46 0.82 16 25 C 0.16 3.66 7.31 22.47 0.16 3.83 16 26 F -0.14 -3.50 17.07 44.97 0.77 -2.73 16 27 C -0.24 -5.16 9.87 22.42 0.22 -4.94 16 28 H 0.04 1.42 6.95 -2.39 -0.02 1.40 16 29 H 0.06 1.65 7.18 -2.38 -0.02 1.64 16 30 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 32 H 0.02 0.91 7.57 -2.39 -0.02 0.90 16 33 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 34 H 0.06 1.61 7.94 -2.38 -0.02 1.59 16 35 H 0.07 1.66 7.96 -2.39 -0.02 1.64 16 36 H 0.41 8.53 7.67 -92.70 -0.71 7.82 16 37 H 0.14 2.65 6.73 -2.91 -0.02 2.63 16 38 H 0.14 2.25 7.04 -2.91 -0.02 2.23 16 39 H 0.05 0.76 7.41 -2.38 -0.02 0.74 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.05 0.76 7.22 -2.39 -0.02 0.75 16 47 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -65.02 374.55 1.48 -63.55 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.20 Total: 19.35 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: 4.94 Total: -26.50 kcal Atomic # 7 Polarization: -85.06 SS G_CDS: -4.71 Total: -89.77 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -1.61 Total: -8.52 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.77 Total: -2.73 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.88 Total: 44.62 kcal Total: -65.02 1.48 -63.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876859254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.834 kcal (2) G-P(sol) polarization free energy of solvation -65.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds