Wall clock time and date at job start Sat Apr 11 2020 00:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47094 * 2 1 4 4 C 1.50699 * 109.47243 * 120.00105 * 2 1 3 5 5 H 1.08000 * 120.00088 * 120.00290 * 4 2 1 6 6 C 1.37876 * 119.99886 * 299.99859 * 4 2 1 7 7 N 1.31510 * 119.99985 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 120.00044 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47378 * 89.99866 * 8 6 4 10 10 H 1.48502 * 109.47145 * 209.99497 * 8 6 4 11 11 H 1.48498 * 109.47166 * 329.99883 * 8 6 4 12 12 N 1.46503 * 109.47045 * 240.00312 * 2 1 3 13 13 C 1.46496 * 119.99907 * 299.99473 * 12 2 1 14 14 C 1.34772 * 120.00020 * 120.00235 * 12 2 1 15 15 O 1.21592 * 120.00238 * 359.97438 * 14 12 2 16 16 N 1.34772 * 119.99925 * 179.97438 * 14 12 2 17 17 C 1.39944 * 119.99896 * 175.41130 * 16 14 12 18 18 C 1.38912 * 120.05639 * 214.81936 * 17 16 14 19 19 C 1.38105 * 119.97748 * 179.69653 * 18 17 16 20 20 C 1.38259 * 120.09626 * 0.60210 * 19 18 17 21 21 C 1.50698 * 119.94581 * 179.69887 * 20 19 18 22 22 C 1.52998 * 109.46901 * 359.97438 * 21 20 19 23 23 C 1.52998 * 109.47394 * 119.97519 * 21 20 19 24 24 C 1.53005 * 109.47071 * 239.97814 * 21 20 19 25 25 C 1.38495 * 120.11469 * 359.67212 * 20 19 18 26 26 F 1.35096 * 119.99227 * 179.97438 * 25 20 19 27 27 C 1.38358 * 120.01828 * 0.02718 * 25 20 19 28 28 H 1.08997 * 109.46639 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47123 * 299.99716 * 1 2 3 30 30 H 1.09000 * 109.46831 * 60.00050 * 1 2 3 31 31 H 0.97003 * 120.00023 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.47127 * 90.00591 * 13 12 2 33 33 H 1.08993 * 109.47243 * 210.00001 * 13 12 2 34 34 H 1.08996 * 109.47332 * 330.00574 * 13 12 2 35 35 H 0.96993 * 120.00307 * 355.41286 * 16 14 12 36 36 H 1.07995 * 120.00462 * 359.97438 * 18 17 16 37 37 H 1.07996 * 119.94676 * 180.27194 * 19 18 17 38 38 H 1.08998 * 109.47358 * 60.00087 * 22 21 20 39 39 H 1.09001 * 109.47456 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.47485 * 300.00079 * 22 21 20 41 41 H 1.09000 * 109.47065 * 59.99907 * 23 21 20 42 42 H 1.08995 * 109.47173 * 180.02562 * 23 21 20 43 43 H 1.08998 * 109.46895 * 299.99932 * 23 21 20 44 44 H 1.09000 * 109.47186 * 60.00000 * 24 21 20 45 45 H 1.09002 * 109.46840 * 180.02562 * 24 21 20 46 46 H 1.08996 * 109.46711 * 299.99034 * 24 21 20 47 47 H 1.07996 * 120.04851 * 180.02562 * 27 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9759 1.9950 3.9068 11 1 0.8470 2.1765 1.4920 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7932 -0.0356 -2.0833 15 8 3.0866 1.1287 -1.8911 16 7 3.2429 -0.6710 -3.1835 17 6 3.9665 0.0339 -4.1520 18 6 3.8272 -0.2885 -5.4960 19 6 4.5373 0.4123 -6.4509 20 6 5.3965 1.4265 -6.0704 21 6 6.1748 2.1845 -7.1147 22 6 5.8334 1.6374 -8.5021 23 6 5.8080 3.6683 -7.0472 24 6 7.6734 2.0173 -6.8551 25 6 5.5426 1.7474 -4.7311 26 9 6.3832 2.7385 -4.3620 27 6 4.8288 1.0526 -3.7709 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.9027 -0.5284 4.4375 32 1 0.7377 -2.1444 -1.9994 33 1 2.4629 -2.5817 -1.9864 34 1 1.5296 -2.5968 -0.4709 35 1 3.0649 -1.6168 -3.3041 36 1 3.1604 -1.0840 -5.7943 37 1 4.4253 0.1641 -7.4960 38 1 4.7658 1.7564 -8.6871 39 1 6.3967 2.1853 -9.2575 40 1 6.0948 0.5803 -8.5503 41 1 6.0512 4.0581 -6.0587 42 1 6.3706 4.2164 -7.8028 43 1 4.7404 3.7874 -7.2321 44 1 7.9347 0.9602 -6.9033 45 1 8.2363 2.5659 -7.6103 46 1 7.9166 2.4071 -5.8668 47 1 4.9421 1.3027 -2.7264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881074319.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:49:45 Heat of formation + Delta-G solvation = -59.945024 kcal Electronic energy + Delta-G solvation = -27785.140592 eV Core-core repulsion = 23882.112288 eV Total energy + Delta-G solvation = -3903.028304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.97239 -41.83032 -40.27929 -38.08681 -37.05745 -35.50022 -34.53460 -32.23452 -31.66500 -29.65406 -28.24328 -28.13757 -27.73269 -27.18045 -24.74856 -23.58747 -22.88288 -20.84842 -20.42182 -19.65026 -18.98302 -18.37834 -17.65229 -17.21377 -16.79496 -16.74902 -16.60989 -16.28063 -15.83621 -15.20755 -15.09376 -15.07553 -14.68357 -14.59621 -14.36437 -14.17332 -14.03619 -13.81550 -13.61889 -13.37183 -13.11562 -13.05601 -13.00551 -12.76156 -12.68075 -12.67234 -12.49634 -12.07624 -11.90521 -11.71185 -11.60983 -11.51922 -11.39520 -11.24944 -10.96890 -10.81267 -9.80116 -9.55274 -8.99321 -8.37196 -6.41664 0.13265 0.25596 1.24608 1.34991 1.43296 1.58768 2.02630 2.26064 2.66014 2.89437 2.98969 3.35000 3.58825 3.76729 4.03656 4.12292 4.19369 4.25904 4.35058 4.38417 4.44097 4.53066 4.56696 4.56770 4.74429 4.76873 4.81438 4.87479 4.92437 4.93467 5.01927 5.05329 5.05972 5.06740 5.14758 5.23714 5.24787 5.31000 5.41750 5.42563 5.45598 5.50188 5.58548 5.65499 5.92769 5.99419 6.28773 6.60260 6.93435 7.22253 7.49037 8.78770 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.023106 B = 0.002921 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.500519 B = 9584.010650 C =10102.247453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.248 3.752 3 H 0.029 0.971 4 C -0.527 4.527 5 H 0.047 0.953 6 C 0.024 3.976 7 N -0.939 5.939 8 Si 0.939 3.061 9 H -0.250 1.250 10 H -0.297 1.297 11 H -0.264 1.264 12 N -0.605 5.605 13 C 0.077 3.923 14 C 0.693 3.307 15 O -0.625 6.625 16 N -0.672 5.672 17 C 0.179 3.821 18 C -0.141 4.141 19 C -0.065 4.065 20 C -0.125 4.125 21 C -0.024 4.024 22 C -0.139 4.139 23 C -0.147 4.147 24 C -0.145 4.145 25 C 0.100 3.900 26 F -0.147 7.147 27 C -0.187 4.187 28 H 0.073 0.927 29 H 0.042 0.958 30 H 0.055 0.945 31 H 0.269 0.731 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.424 0.576 36 H 0.169 0.831 37 H 0.178 0.822 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.040 0.960 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.041 0.959 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.199 -0.757 -27.889 28.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.144 3.856 3 H 0.047 0.953 4 C -0.565 4.565 5 H 0.065 0.935 6 C -0.175 4.175 7 N -0.578 5.578 8 Si 0.767 3.233 9 H -0.175 1.175 10 H -0.224 1.224 11 H -0.189 1.189 12 N -0.338 5.338 13 C -0.065 4.065 14 C 0.395 3.605 15 O -0.506 6.506 16 N -0.323 5.323 17 C 0.083 3.917 18 C -0.161 4.161 19 C -0.083 4.083 20 C -0.127 4.127 21 C -0.025 4.025 22 C -0.196 4.196 23 C -0.204 4.204 24 C -0.202 4.202 25 C 0.080 3.920 26 F -0.125 7.125 27 C -0.209 4.209 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.266 0.734 36 H 0.187 0.813 37 H 0.196 0.804 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.060 0.940 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.350 0.029 -27.453 27.657 hybrid contribution -0.065 0.545 1.681 1.768 sum 3.285 0.574 -25.772 25.987 Atomic orbital electron populations 1.22303 0.96339 1.02486 0.99881 1.18880 0.91766 0.93047 0.81885 0.95265 1.21373 1.31770 1.13237 0.90161 0.93458 1.25611 0.97143 0.99385 0.95317 1.69993 1.47082 1.42124 0.98615 0.86005 0.80084 0.80214 0.77036 1.17543 1.22429 1.18931 1.47116 1.51187 1.13465 1.22062 1.21881 1.01434 0.80061 1.03125 1.16128 0.79327 0.84509 0.80568 1.90857 1.64006 1.17969 1.77745 1.42550 1.56471 1.13548 1.19692 1.17471 0.91414 0.93793 0.89016 1.21300 1.02632 1.03571 0.88618 1.21240 0.93129 0.92597 1.01318 1.20155 1.01373 0.99942 0.91211 1.19485 0.94412 0.94450 0.94104 1.21954 1.02492 1.01833 0.93334 1.21961 1.01772 0.94719 1.01941 1.21950 0.94156 1.02298 1.01819 1.17515 0.92447 0.88712 0.93294 1.91393 1.69155 1.59458 1.92540 1.21188 0.99100 1.00590 0.99974 0.90781 0.93950 0.92623 0.92216 0.90123 0.89822 0.91145 0.73432 0.81338 0.80441 0.91275 0.91068 0.90905 0.94114 0.90507 0.92554 0.92071 0.90619 0.94024 0.87101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.21 8.67 71.98 0.62 -5.59 16 2 C 0.25 11.95 2.23 44.25 0.10 12.05 16 3 H 0.03 1.62 5.96 -2.38 -0.01 1.61 16 4 C -0.53 -29.56 8.57 25.60 0.22 -29.34 16 5 H 0.05 2.88 7.58 -2.91 -0.02 2.86 16 6 C 0.02 1.41 5.45 84.66 0.46 1.87 16 7 N -0.94 -57.72 13.96 21.45 0.30 -57.42 16 8 Si 0.94 45.37 24.37 68.60 1.67 47.04 16 9 H -0.25 -10.96 6.87 99.48 0.68 -10.28 16 10 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 11 H -0.26 -12.76 6.53 99.48 0.65 -12.11 16 12 N -0.60 -24.17 2.75 -844.85 -2.33 -26.49 16 13 C 0.08 2.21 9.24 127.77 1.18 3.39 16 14 C 0.69 28.06 8.13 179.06 1.45 29.52 16 15 O -0.62 -31.26 13.10 -4.00 -0.05 -31.32 16 16 N -0.67 -19.57 5.22 -317.20 -1.65 -21.22 16 17 C 0.18 5.07 6.30 38.14 0.24 5.31 16 18 C -0.14 -2.61 9.97 22.40 0.22 -2.39 16 19 C -0.06 -1.07 8.97 22.24 0.20 -0.87 16 20 C -0.13 -2.72 4.77 -19.80 -0.09 -2.81 16 21 C -0.02 -0.41 0.75 -52.93 -0.04 -0.45 16 22 C -0.14 -1.39 7.13 71.98 0.51 -0.87 16 23 C -0.15 -2.67 8.26 71.98 0.59 -2.08 16 24 C -0.15 -2.47 8.26 71.98 0.59 -1.88 16 25 C 0.10 3.01 6.79 22.36 0.15 3.16 16 26 F -0.15 -4.76 13.36 44.97 0.60 -4.16 16 27 C -0.19 -6.51 8.67 22.43 0.19 -6.31 16 28 H 0.07 2.73 7.67 -2.39 -0.02 2.71 16 29 H 0.04 1.80 3.27 -2.39 -0.01 1.79 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 32 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.08 1.78 6.30 -2.39 -0.02 1.77 16 34 H 0.07 2.34 7.02 -2.39 -0.02 2.33 16 35 H 0.42 8.73 6.52 -92.71 -0.60 8.13 16 36 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.18 1.52 5.88 -2.91 -0.02 1.51 16 38 H 0.07 0.59 7.51 -2.39 -0.02 0.57 16 39 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.07 0.57 7.51 -2.39 -0.02 0.55 16 41 H 0.04 0.93 6.30 -2.39 -0.02 0.92 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.04 0.90 6.30 -2.39 -0.02 0.88 16 47 H 0.11 4.83 6.22 -2.91 -0.02 4.81 16 Total: -1.00 -77.09 362.80 5.47 -71.62 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.31 Total: 19.23 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 6.62 Total: 2.71 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -3.68 Total: -105.13 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.05 Total: -31.32 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.60 Total: -4.16 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.67 Total: 47.04 kcal Total: -77.09 5.47 -71.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881074319.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.680 kcal (2) G-P(sol) polarization free energy of solvation -77.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds