Wall clock time and date at job start Sat Apr 11 2020 00:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.50703 * 109.47349 * 89.99630 * 3 2 1 5 5 H 1.08007 * 119.99972 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00296 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00149 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00169 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46982 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47194 * 119.99521 * 8 6 4 11 11 H 1.48495 * 109.47123 * 239.99959 * 8 6 4 12 12 C 1.39679 * 120.00117 * 179.97438 * 2 1 3 13 13 C 1.38914 * 120.07290 * 179.72543 * 12 2 1 14 14 C 1.38110 * 119.91923 * 179.77157 * 13 12 2 15 15 C 1.38286 * 120.07501 * 0.50850 * 14 13 12 16 16 C 1.50695 * 119.92318 * 179.76681 * 15 14 13 17 17 N 1.46902 * 109.47181 * 269.97567 * 16 15 14 18 18 C 1.46847 * 111.00323 * 294.21181 * 17 16 15 19 19 C 1.53034 * 109.52413 * 174.15637 * 18 17 16 20 20 C 1.53128 * 109.27706 * 59.18276 * 19 18 17 21 21 H 1.08996 * 109.52282 * 62.24584 * 20 19 18 22 22 O 1.42891 * 109.57546 * 182.40894 * 20 19 18 23 23 C 1.53120 * 109.15889 * 302.34263 * 20 19 18 24 24 H 1.08992 * 109.53602 * 177.61397 * 23 20 19 25 25 F 1.39902 * 109.50469 * 297.71367 * 23 20 19 26 26 C 1.46847 * 110.99976 * 170.00146 * 17 16 15 27 27 C 1.38281 * 120.14894 * 359.74417 * 15 14 13 28 28 C 1.38098 * 120.07883 * 0.02562 * 27 15 14 29 29 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 30 30 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 31 31 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 32 32 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 33 33 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 34 34 H 0.96993 * 120.00222 * 180.02562 * 7 6 4 35 35 H 1.07995 * 120.03709 * 0.02562 * 13 12 2 36 36 H 1.08001 * 119.96108 * 180.25139 * 14 13 12 37 37 H 1.09001 * 109.47370 * 29.97843 * 16 15 14 38 38 H 1.09003 * 109.47192 * 149.97730 * 16 15 14 39 39 H 1.08998 * 109.45704 * 294.17700 * 18 17 16 40 40 H 1.09000 * 109.45923 * 54.14357 * 18 17 16 41 41 H 1.08997 * 109.50447 * 299.24097 * 19 18 17 42 42 H 1.08999 * 109.53696 * 179.13624 * 19 18 17 43 43 H 0.96707 * 114.00246 * 299.71122 * 22 20 19 44 44 H 1.09002 * 109.46516 * 305.85373 * 26 17 16 45 45 H 1.08991 * 109.46484 * 65.83452 * 26 17 16 46 46 H 1.08009 * 119.96077 * 180.02562 * 27 15 14 47 47 H 1.08006 * 120.04344 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0980 1.0958 2.2418 6 6 3.1260 2.8780 1.6728 7 7 3.5534 3.6181 0.6732 8 14 3.4379 3.4169 3.4340 9 1 2.8618 2.4158 4.3673 10 1 4.9005 3.5257 3.6667 11 1 2.7999 4.7373 3.6679 12 6 2.1634 -1.2096 0.0005 13 6 3.5525 -1.2114 -0.0052 14 6 4.2399 -2.4093 0.0001 15 6 3.5469 -3.6059 0.0005 16 6 4.3004 -4.9110 0.0010 17 7 4.5448 -5.3359 -1.3838 18 6 3.2844 -5.6543 -2.0668 19 6 3.5629 -5.9509 -3.5421 20 6 4.5337 -7.1306 -3.6461 21 1 4.0758 -8.0186 -3.2103 22 8 4.8420 -7.3772 -5.0193 23 6 5.8190 -6.7922 -2.8859 24 1 6.4978 -7.6443 -2.9201 25 9 6.4326 -5.6822 -3.4765 26 6 5.4750 -6.4712 -1.4295 27 6 2.1641 -3.6077 0.0010 28 6 1.4704 -2.4136 0.0005 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3633 0.8900 -0.5139 32 1 3.1499 1.1384 -0.5137 33 1 1.6085 2.0284 -0.5138 34 1 4.0302 4.4439 0.8504 35 1 4.0943 -0.2772 -0.0097 36 1 5.3199 -2.4114 -0.0003 37 1 5.2530 -4.7804 0.5145 38 1 3.7115 -5.6704 0.5155 39 1 2.8293 -6.5280 -1.6003 40 1 2.6047 -4.8058 -1.9890 41 1 4.0055 -5.0729 -4.0125 42 1 2.6296 -6.2023 -4.0459 43 1 4.0725 -7.5982 -5.5618 44 1 6.3865 -6.2159 -0.8890 45 1 5.0096 -7.3410 -0.9662 46 1 1.6259 -4.5441 0.0017 47 1 0.3904 -2.4156 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898194777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:05 Heat of formation + Delta-G solvation = -61.037251 kcal Electronic energy + Delta-G solvation = -27393.815926 eV Core-core repulsion = 23490.740259 eV Total energy + Delta-G solvation = -3903.075667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.56136 -39.53100 -38.59060 -36.90970 -35.50489 -32.83831 -32.18895 -30.98826 -30.40489 -29.41139 -27.81391 -26.19280 -24.57650 -23.60005 -23.06273 -21.98115 -21.41088 -20.00513 -19.59234 -17.71994 -16.95722 -16.63406 -16.47284 -15.94495 -15.53877 -15.42723 -14.91735 -14.89715 -14.40211 -14.27093 -13.98945 -13.70060 -13.60725 -13.42921 -13.17222 -12.95309 -12.89556 -12.28494 -12.14841 -11.95900 -11.87338 -11.77844 -11.47291 -11.36570 -11.24679 -11.19148 -10.92123 -10.69761 -10.68571 -10.52956 -10.25869 -10.14757 -9.89348 -9.74417 -8.84746 -8.50632 -8.39444 -8.25437 -6.47012 -6.01808 -4.17076 2.09957 2.18747 3.25383 3.33513 3.38234 3.63815 3.75311 4.14389 4.20692 4.39647 4.41280 4.46909 4.60534 4.71610 4.83089 4.99782 5.05463 5.15265 5.21736 5.27719 5.32525 5.39981 5.50460 5.54216 5.59481 5.67512 5.71378 5.78507 5.89131 6.00892 6.07901 6.11150 6.27851 6.36926 6.42676 6.62541 6.85496 6.91981 6.98963 7.05191 7.20695 7.23179 7.27033 7.37543 7.59615 7.81342 8.15716 8.26052 8.47858 8.91985 9.49741 10.95973 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020140 B = 0.002647 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.930795 B =10575.040621 C =10962.801886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.616 5.616 3 C 0.248 3.752 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.243 3.757 13 C -0.187 4.187 14 C -0.049 4.049 15 C -0.169 4.169 16 C 0.113 3.887 17 N -0.528 5.528 18 C 0.054 3.946 19 C -0.150 4.150 20 C 0.077 3.923 21 H 0.066 0.934 22 O -0.560 6.560 23 C 0.110 3.890 24 H 0.087 0.913 25 F -0.193 7.193 26 C 0.029 3.971 27 C -0.069 4.069 28 C -0.223 4.223 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.036 0.964 33 H 0.030 0.970 34 H 0.263 0.737 35 H 0.132 0.868 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.030 0.970 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.380 0.620 44 H 0.093 0.907 45 H 0.049 0.951 46 H 0.104 0.896 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.103 -22.809 -6.195 23.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.321 5.321 3 C 0.129 3.871 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.210 1.210 12 C 0.136 3.864 13 C -0.210 4.210 14 C -0.068 4.068 15 C -0.172 4.172 16 C -0.013 4.013 17 N -0.252 5.252 18 C -0.074 4.074 19 C -0.188 4.188 20 C 0.018 3.982 21 H 0.084 0.916 22 O -0.366 6.366 23 C 0.073 3.927 24 H 0.105 0.895 25 F -0.174 7.174 26 C -0.100 4.100 27 C -0.088 4.088 28 C -0.246 4.246 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.149 0.851 36 H 0.130 0.870 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.048 0.952 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.228 0.772 44 H 0.111 0.889 45 H 0.067 0.933 46 H 0.122 0.878 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.292 -21.861 -6.286 22.749 hybrid contribution -0.819 -0.232 1.240 1.504 sum -1.112 -22.093 -5.045 22.689 Atomic orbital electron populations 1.21456 0.81529 1.00978 1.00403 1.47101 1.04371 1.04677 1.75954 1.19311 0.92129 0.78667 0.97023 1.21604 1.36285 1.06353 0.92664 0.92254 1.24964 0.95439 0.96312 0.97397 1.69935 1.38380 1.14365 1.30691 0.86471 0.78053 0.78439 0.84686 1.19754 1.20825 1.20960 1.17947 0.91515 0.85918 0.91024 1.20903 0.92643 0.98849 1.08602 1.20639 0.98801 0.91285 0.96094 1.19069 0.93043 0.93631 1.11456 1.20817 0.99356 0.93968 0.87167 1.61909 1.12402 1.34111 1.16828 1.22131 0.91859 1.00524 0.92859 1.22295 0.99177 0.99797 0.97532 1.22460 0.95415 0.97142 0.83185 0.91642 1.86542 1.37773 1.92568 1.19687 1.21526 0.92990 0.86726 0.91420 0.89477 1.92856 1.84016 1.55215 1.85266 1.22679 0.98688 0.93578 0.95029 1.20483 0.93276 0.96407 0.98639 1.20507 0.98908 0.91385 1.13783 0.94119 0.92869 0.92050 0.94572 0.95214 0.92685 0.85053 0.86983 0.90411 0.94767 0.95158 0.88771 0.89372 0.90980 0.77223 0.88869 0.93268 0.87817 0.86974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.75 10.23 59.85 0.61 2.37 16 2 N -0.62 -13.16 2.99 -181.00 -0.54 -13.70 16 3 C 0.25 6.25 4.96 -5.19 -0.03 6.22 16 4 C -0.53 -14.52 9.39 -34.44 -0.32 -14.85 16 5 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 6 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 7 N -0.89 -25.75 13.29 55.43 0.74 -25.02 16 8 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.24 4.89 6.55 -83.78 -0.55 4.34 16 13 C -0.19 -3.81 9.21 -39.38 -0.36 -4.17 16 14 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16 15 C -0.17 -2.55 4.89 -104.59 -0.51 -3.06 16 16 C 0.11 1.36 5.12 -4.98 -0.03 1.33 16 17 N -0.53 -6.15 4.58 -236.12 -1.08 -7.24 16 18 C 0.05 0.57 5.15 -3.84 -0.02 0.55 16 19 C -0.15 -1.45 5.60 -26.65 -0.15 -1.59 16 20 C 0.08 0.68 3.35 -26.60 -0.09 0.59 16 21 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 22 O -0.56 -5.23 13.24 -35.23 -0.47 -5.70 16 23 C 0.11 1.10 3.86 -26.65 -0.10 1.00 16 24 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 25 F -0.19 -2.72 16.53 2.25 0.04 -2.68 16 26 C 0.03 0.27 5.21 -3.83 -0.02 0.25 16 27 C -0.07 -1.02 7.86 -39.62 -0.31 -1.33 16 28 C -0.22 -3.78 9.21 -39.38 -0.36 -4.15 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.78 6.20 -51.93 -0.32 0.46 16 31 H 0.06 1.03 7.89 -51.93 -0.41 0.62 16 32 H 0.04 0.96 6.19 -51.93 -0.32 0.64 16 33 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 35 H 0.13 2.96 6.14 -52.49 -0.32 2.64 16 36 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.08 0.89 7.93 -51.93 -0.41 0.48 16 38 H 0.03 0.37 8.07 -51.93 -0.42 -0.05 16 39 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.09 1.14 5.75 -51.93 -0.30 0.84 16 41 H 0.09 1.10 7.91 -51.93 -0.41 0.69 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.38 1.84 9.09 45.56 0.41 2.25 16 44 H 0.09 0.82 8.02 -51.93 -0.42 0.40 16 45 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.10 1.27 7.95 -52.48 -0.42 0.86 16 47 H 0.11 1.72 6.14 -52.48 -0.32 1.39 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -31.57 375.41 -9.97 -41.54 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.57 Total: 2.91 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -2.72 Total: -12.13 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -0.89 Total: -45.95 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.47 Total: -5.70 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.57 -9.97 -41.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898194777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.493 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds