Wall clock time and date at job start Sat Apr 11 2020 00:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.50703 * 109.47349 * 89.99630 * 3 2 1 5 5 H 1.08007 * 119.99972 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00296 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00149 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 120.00169 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46982 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47194 * 119.99521 * 8 6 4 11 11 H 1.48495 * 109.47123 * 239.99959 * 8 6 4 12 12 C 1.39679 * 120.00117 * 179.97438 * 2 1 3 13 13 C 1.38914 * 120.07290 * 179.72543 * 12 2 1 14 14 C 1.38110 * 119.91923 * 179.77157 * 13 12 2 15 15 C 1.38286 * 120.07501 * 0.50850 * 14 13 12 16 16 C 1.50695 * 119.92318 * 179.76681 * 15 14 13 17 17 N 1.46902 * 109.47181 * 269.97567 * 16 15 14 18 18 C 1.46847 * 111.00323 * 294.21181 * 17 16 15 19 19 C 1.53034 * 109.52413 * 174.15637 * 18 17 16 20 20 C 1.53128 * 109.27706 * 59.18276 * 19 18 17 21 21 H 1.08996 * 109.52282 * 62.24584 * 20 19 18 22 22 O 1.42891 * 109.57546 * 182.40894 * 20 19 18 23 23 C 1.53120 * 109.15889 * 302.34263 * 20 19 18 24 24 H 1.08992 * 109.53602 * 177.61397 * 23 20 19 25 25 F 1.39902 * 109.50469 * 297.71367 * 23 20 19 26 26 C 1.46847 * 110.99976 * 170.00146 * 17 16 15 27 27 C 1.38281 * 120.14894 * 359.74417 * 15 14 13 28 28 C 1.38098 * 120.07883 * 0.02562 * 27 15 14 29 29 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 30 30 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 31 31 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 32 32 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 33 33 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 34 34 H 0.96993 * 120.00222 * 180.02562 * 7 6 4 35 35 H 1.07995 * 120.03709 * 0.02562 * 13 12 2 36 36 H 1.08001 * 119.96108 * 180.25139 * 14 13 12 37 37 H 1.09001 * 109.47370 * 29.97843 * 16 15 14 38 38 H 1.09003 * 109.47192 * 149.97730 * 16 15 14 39 39 H 1.08998 * 109.45704 * 294.17700 * 18 17 16 40 40 H 1.09000 * 109.45923 * 54.14357 * 18 17 16 41 41 H 1.08997 * 109.50447 * 299.24097 * 19 18 17 42 42 H 1.08999 * 109.53696 * 179.13624 * 19 18 17 43 43 H 0.96707 * 114.00246 * 299.71122 * 22 20 19 44 44 H 1.09002 * 109.46516 * 305.85373 * 26 17 16 45 45 H 1.08991 * 109.46484 * 65.83452 * 26 17 16 46 46 H 1.08009 * 119.96077 * 180.02562 * 27 15 14 47 47 H 1.08006 * 120.04344 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4208 5 1 2.0980 1.0958 2.2418 6 6 3.1260 2.8780 1.6728 7 7 3.5534 3.6181 0.6732 8 14 3.4379 3.4169 3.4340 9 1 2.8618 2.4158 4.3673 10 1 4.9005 3.5257 3.6667 11 1 2.7999 4.7373 3.6679 12 6 2.1634 -1.2096 0.0005 13 6 3.5525 -1.2114 -0.0052 14 6 4.2399 -2.4093 0.0001 15 6 3.5469 -3.6059 0.0005 16 6 4.3004 -4.9110 0.0010 17 7 4.5448 -5.3359 -1.3838 18 6 3.2844 -5.6543 -2.0668 19 6 3.5629 -5.9509 -3.5421 20 6 4.5337 -7.1306 -3.6461 21 1 4.0758 -8.0186 -3.2103 22 8 4.8420 -7.3772 -5.0193 23 6 5.8190 -6.7922 -2.8859 24 1 6.4978 -7.6443 -2.9201 25 9 6.4326 -5.6822 -3.4765 26 6 5.4750 -6.4712 -1.4295 27 6 2.1641 -3.6077 0.0010 28 6 1.4704 -2.4136 0.0005 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3633 0.8900 -0.5139 32 1 3.1499 1.1384 -0.5137 33 1 1.6085 2.0284 -0.5138 34 1 4.0302 4.4439 0.8504 35 1 4.0943 -0.2772 -0.0097 36 1 5.3199 -2.4114 -0.0003 37 1 5.2530 -4.7804 0.5145 38 1 3.7115 -5.6704 0.5155 39 1 2.8293 -6.5280 -1.6003 40 1 2.6047 -4.8058 -1.9890 41 1 4.0055 -5.0729 -4.0125 42 1 2.6296 -6.2023 -4.0459 43 1 4.0725 -7.5982 -5.5618 44 1 6.3865 -6.2159 -0.8890 45 1 5.0096 -7.3410 -0.9662 46 1 1.6259 -4.5441 0.0017 47 1 0.3904 -2.4156 0.0012 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898194777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:04 Heat of formation + Delta-G solvation = -82.339088 kcal Electronic energy + Delta-G solvation = -27394.739643 eV Core-core repulsion = 23490.740259 eV Total energy + Delta-G solvation = -3903.999384 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.46792 -40.67514 -39.62267 -37.84907 -36.82123 -34.79959 -33.21034 -31.98312 -31.62442 -30.57914 -29.61513 -27.40725 -26.09842 -24.42087 -24.32824 -23.23477 -22.77760 -21.00568 -20.74444 -18.65848 -18.38613 -18.12245 -17.64095 -16.92217 -16.78043 -16.51345 -16.23677 -15.79845 -15.70202 -15.58020 -15.29063 -14.93525 -14.61735 -14.56619 -14.35053 -14.18890 -14.02975 -13.87972 -13.27840 -13.18290 -13.07088 -13.03926 -12.81586 -12.66306 -12.62018 -12.54760 -12.28912 -12.16299 -12.05967 -11.74312 -11.66826 -11.39368 -11.21665 -10.84416 -10.65512 -10.39494 -9.64301 -9.16860 -8.36596 -7.79960 -6.38370 0.71941 0.83992 1.35234 1.36755 1.49146 2.33652 2.63598 2.82744 3.05289 3.07527 3.31618 3.53931 3.70953 3.79732 4.03398 4.06532 4.11711 4.19242 4.23251 4.36493 4.39920 4.42951 4.47174 4.62136 4.67625 4.71181 4.72735 4.78141 4.83452 4.87411 4.91068 4.93517 5.01395 5.10264 5.12376 5.18946 5.32207 5.33235 5.59375 5.66581 5.69924 5.92720 6.06550 6.11541 6.21770 6.24246 6.49848 6.81340 6.82338 6.94288 7.33604 8.82822 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.020140 B = 0.002647 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.930795 B =10575.040621 C =10962.801886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.633 5.633 3 C 0.266 3.734 4 C -0.540 4.540 5 H 0.049 0.951 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.963 3.037 9 H -0.270 1.270 10 H -0.277 1.277 11 H -0.273 1.273 12 C 0.213 3.787 13 C -0.219 4.219 14 C -0.058 4.058 15 C -0.154 4.154 16 C 0.118 3.882 17 N -0.554 5.554 18 C 0.055 3.945 19 C -0.146 4.146 20 C 0.081 3.919 21 H 0.098 0.902 22 O -0.581 6.581 23 C 0.094 3.906 24 H 0.107 0.893 25 F -0.224 7.224 26 C 0.033 3.967 27 C -0.058 4.058 28 C -0.217 4.217 29 H 0.040 0.960 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.008 0.992 33 H 0.009 0.991 34 H 0.267 0.733 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.049 0.951 42 H 0.094 0.906 43 H 0.398 0.602 44 H 0.093 0.907 45 H 0.080 0.920 46 H 0.145 0.855 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.257 -26.610 -5.169 27.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.341 5.341 3 C 0.144 3.856 4 C -0.579 4.579 5 H 0.067 0.933 6 C -0.188 4.188 7 N -0.567 5.567 8 Si 0.788 3.212 9 H -0.194 1.194 10 H -0.203 1.203 11 H -0.199 1.199 12 C 0.108 3.892 13 C -0.241 4.241 14 C -0.077 4.077 15 C -0.157 4.157 16 C -0.009 4.009 17 N -0.279 5.279 18 C -0.073 4.073 19 C -0.185 4.185 20 C 0.022 3.978 21 H 0.116 0.884 22 O -0.390 6.390 23 C 0.057 3.943 24 H 0.124 0.876 25 F -0.205 7.205 26 C -0.095 4.095 27 C -0.077 4.077 28 C -0.239 4.239 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.026 0.974 33 H 0.027 0.973 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.134 0.866 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.068 0.932 42 H 0.113 0.887 43 H 0.249 0.751 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.163 0.837 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.463 -25.709 -5.274 26.285 hybrid contribution -0.413 0.790 0.829 1.217 sum -1.876 -24.919 -4.445 25.382 Atomic orbital electron populations 1.21592 0.79331 1.02553 1.00804 1.46953 1.05656 1.03726 1.77724 1.18780 0.91024 0.80299 0.95447 1.21794 1.36317 1.06431 0.93312 0.93312 1.25808 0.95088 0.96348 1.01601 1.70045 1.39041 1.14837 1.32821 0.85430 0.78026 0.78211 0.79552 1.19417 1.20309 1.19882 1.18218 0.91492 0.86587 0.92894 1.20767 0.93357 0.98431 1.11589 1.20777 0.99222 0.91396 0.96307 1.19471 0.93637 0.94211 1.08374 1.20777 0.99521 0.92604 0.87983 1.61776 1.13515 1.36141 1.16469 1.22126 0.91126 1.00794 0.93252 1.22255 1.00258 0.98786 0.97152 1.22483 0.94444 0.97758 0.83083 0.88397 1.86503 1.39481 1.92654 1.20385 1.21955 0.94074 0.86220 0.92009 0.87574 1.92793 1.84741 1.57003 1.85921 1.22691 0.98361 0.93782 0.94666 1.20906 0.93219 0.97195 0.96367 1.20793 1.00057 0.90637 1.12435 0.94185 0.89650 0.92137 0.97394 0.97272 0.92390 0.89109 0.86559 0.90079 0.92170 0.92391 0.90642 0.93244 0.88732 0.75138 0.88876 0.90175 0.83739 0.84795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.49 10.23 127.77 1.31 4.80 16 2 N -0.63 -28.16 2.99 -726.55 -2.17 -30.33 16 3 C 0.27 14.33 4.96 85.63 0.42 14.75 16 4 C -0.54 -30.94 9.39 25.60 0.24 -30.70 16 5 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 6 C 0.01 0.61 5.46 84.65 0.46 1.07 16 7 N -0.93 -55.48 13.29 21.45 0.28 -55.20 16 8 Si 0.96 44.77 29.54 68.60 2.03 46.80 16 9 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 C 0.21 8.78 6.55 38.21 0.25 9.03 16 13 C -0.22 -9.46 9.21 22.40 0.21 -9.25 16 14 C -0.06 -2.05 9.69 22.25 0.22 -1.83 16 15 C -0.15 -4.35 4.89 -19.84 -0.10 -4.44 16 16 C 0.12 2.43 5.12 85.55 0.44 2.86 16 17 N -0.55 -11.35 4.58 -900.94 -4.13 -15.48 16 18 C 0.05 0.95 5.15 86.32 0.44 1.40 16 19 C -0.15 -2.48 5.60 30.65 0.17 -2.31 16 20 C 0.08 1.18 3.35 30.68 0.10 1.29 16 21 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 22 O -0.58 -9.61 13.24 -148.98 -1.97 -11.58 16 23 C 0.09 1.66 3.86 30.65 0.12 1.78 16 24 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 25 F -0.22 -6.26 16.53 44.97 0.74 -5.51 16 26 C 0.03 0.50 5.21 86.33 0.45 0.95 16 27 C -0.06 -1.54 7.86 22.25 0.17 -1.36 16 28 C -0.22 -6.96 9.21 22.40 0.21 -6.76 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.09 2.37 6.20 -2.39 -0.01 2.36 16 31 H 0.06 2.07 7.89 -2.38 -0.02 2.05 16 32 H 0.01 0.47 6.19 -2.39 -0.01 0.46 16 33 H 0.01 0.52 7.89 -2.39 -0.02 0.51 16 34 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 35 H 0.09 4.58 6.14 -2.91 -0.02 4.56 16 36 H 0.12 3.88 8.06 -2.91 -0.02 3.85 16 37 H 0.08 1.63 7.93 -2.39 -0.02 1.61 16 38 H 0.06 0.97 8.07 -2.39 -0.02 0.95 16 39 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.08 1.59 5.75 -2.39 -0.01 1.58 16 41 H 0.05 1.22 7.91 -2.39 -0.02 1.20 16 42 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.40 2.89 9.09 -74.05 -0.67 2.22 16 44 H 0.09 1.40 8.02 -2.39 -0.02 1.38 16 45 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.14 2.73 7.95 -2.91 -0.02 2.71 16 47 H 0.13 3.67 6.14 -2.91 -0.02 3.65 16 Total: -1.00 -73.02 375.41 0.19 -72.82 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.30 Total: 17.21 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 5.12 Total: -18.73 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -6.02 Total: -101.01 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -1.97 Total: -11.58 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.74 Total: -5.51 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -73.02 0.19 -72.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898194777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.517 kcal (2) G-P(sol) polarization free energy of solvation -73.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds