Wall clock time and date at job start Sat Apr 11 2020 00:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21282 * 119.99936 * 2 1 4 4 N 1.34776 * 119.99914 * 180.02562 * 2 1 3 5 5 C 1.46501 * 119.99891 * 185.30572 * 4 2 1 6 6 H 1.09000 * 109.47309 * 182.27548 * 5 4 2 7 7 C 1.50702 * 109.47098 * 62.27766 * 5 4 2 8 8 C 1.38224 * 120.01694 * 257.24324 * 7 5 4 9 9 C 1.38219 * 120.02822 * 179.72343 * 8 7 5 10 10 C 1.38269 * 120.04912 * 0.54812 * 9 8 7 11 11 C 1.38178 * 120.02705 * 359.72332 * 10 9 8 12 12 C 1.38443 * 120.01198 * 77.51069 * 7 5 4 13 13 F 1.35093 * 120.02498 * 0.03005 * 12 7 5 14 14 C 1.53001 * 109.47028 * 302.28200 * 5 4 2 15 15 H 1.09000 * 109.47155 * 64.99761 * 14 5 4 16 16 C 1.53003 * 109.46867 * 185.00168 * 14 5 4 17 17 N 1.46899 * 109.46638 * 304.99675 * 14 5 4 18 18 C 1.46907 * 110.99811 * 155.00299 * 17 14 5 19 19 C 1.52997 * 109.47122 * 179.97438 * 18 17 14 20 20 C 1.52994 * 109.47107 * 180.02562 * 19 18 17 21 21 C 1.50700 * 109.47512 * 179.97438 * 20 19 18 22 22 H 1.08005 * 119.99449 * 0.02562 * 21 20 19 23 23 C 1.37874 * 120.00333 * 179.97438 * 21 20 19 24 24 N 1.31514 * 119.99949 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99827 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47213 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47174 * 120.00447 * 25 23 21 28 28 H 1.48498 * 109.47009 * 239.99845 * 25 23 21 29 29 H 1.09009 * 109.46936 * 239.99516 * 1 2 3 30 30 H 1.09001 * 109.47450 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.47943 * 119.99606 * 1 2 3 32 32 H 0.97001 * 119.99917 * 5.29723 * 4 2 1 33 33 H 1.08006 * 119.98066 * 359.97438 * 8 7 5 34 34 H 1.08005 * 119.97211 * 180.27169 * 9 8 7 35 35 H 1.07998 * 119.98252 * 179.70516 * 10 9 8 36 36 H 1.07994 * 120.00702 * 180.02562 * 11 10 9 37 37 H 1.08994 * 109.46947 * 179.97438 * 16 14 5 38 38 H 1.09000 * 109.46864 * 299.99465 * 16 14 5 39 39 H 1.09001 * 109.47320 * 59.99356 * 16 14 5 40 40 H 1.00902 * 111.00089 * 278.95625 * 17 14 5 41 41 H 1.08996 * 109.47080 * 300.00069 * 18 17 14 42 42 H 1.09003 * 109.46863 * 59.99759 * 18 17 14 43 43 H 1.09005 * 109.47303 * 300.00194 * 19 18 17 44 44 H 1.08995 * 109.47048 * 60.00057 * 19 18 17 45 45 H 1.09005 * 109.47132 * 300.00218 * 20 19 18 46 46 H 1.09001 * 109.47534 * 60.00288 * 20 19 18 47 47 H 0.96998 * 119.99948 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6411 -1.1700 0.1168 6 1 4.0085 -2.1945 0.0573 7 6 4.0399 -0.5694 1.4402 8 6 4.5191 0.7259 1.4954 9 6 4.8795 1.2790 2.7098 10 6 4.7719 0.5334 3.8693 11 6 4.2984 -0.7636 3.8159 12 6 3.9316 -1.3168 2.6005 13 9 3.4691 -2.5849 2.5471 14 6 4.2457 -0.3444 -1.0207 15 1 3.9494 0.6987 -0.9098 16 6 5.7714 -0.4493 -0.9719 17 7 3.7606 -0.8570 -2.3090 18 6 3.8025 0.1879 -3.3408 19 6 3.2916 -0.3825 -4.6654 20 6 3.3358 0.7056 -5.7400 21 6 2.8332 0.1436 -7.0449 22 1 2.5137 -0.8865 -7.1018 23 6 2.7801 0.9448 -8.1657 24 7 3.1686 2.1993 -8.0962 25 14 2.1564 0.2483 -9.7829 26 1 1.7841 -1.1771 -9.5972 27 1 0.9664 1.0176 -10.2271 28 1 3.2237 0.3508 -10.8104 29 1 -0.3633 -0.5140 0.8900 30 1 -0.3634 1.0277 0.0005 31 1 -0.3635 -0.5138 -0.8900 32 1 1.6989 -2.0054 -0.0785 33 1 4.6081 1.3075 0.5896 34 1 5.2497 2.2927 2.7524 35 1 5.0583 0.9650 4.8169 36 1 4.2141 -1.3454 4.7218 37 1 6.2020 0.1384 -1.7825 38 1 6.1313 -0.0690 -0.0159 39 1 6.0676 -1.4925 -1.0827 40 1 4.2857 -1.6696 -2.5958 41 1 3.1719 1.0236 -3.0373 42 1 4.8285 0.5338 -3.4662 43 1 3.9225 -1.2181 -4.9686 44 1 2.2657 -0.7287 -4.5402 45 1 2.7051 1.5414 -5.4370 46 1 4.3619 1.0514 -5.8651 47 1 3.1317 2.7629 -8.8848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924943529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:29 Heat of formation + Delta-G solvation = -90.211724 kcal Electronic energy + Delta-G solvation = -27716.098234 eV Core-core repulsion = 23811.757467 eV Total energy + Delta-G solvation = -3904.340767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.180 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.88230 -41.37578 -39.54824 -38.30734 -36.33002 -35.16884 -33.82059 -32.54473 -31.45088 -30.38728 -30.28077 -27.67560 -26.72322 -24.52495 -24.00051 -22.88314 -22.28498 -21.89375 -20.47691 -18.79036 -18.48370 -18.13311 -17.41783 -17.11232 -16.78584 -16.63154 -16.50217 -16.27911 -15.88776 -15.70517 -15.29817 -14.96140 -14.62566 -14.53662 -14.34690 -14.08839 -13.82143 -13.64167 -13.57273 -13.32086 -13.22493 -13.10540 -12.95455 -12.75904 -12.69311 -12.56616 -12.47201 -12.23165 -12.10665 -11.81633 -11.56745 -11.38912 -11.10036 -10.62498 -10.57518 -9.99665 -9.82539 -9.60588 -9.31261 -8.21028 -6.32680 0.16617 0.28885 1.39196 1.39868 1.53537 1.84604 2.37533 2.40289 2.79467 3.04539 3.11953 3.30960 3.64575 3.78308 3.98341 4.09278 4.11802 4.19007 4.23940 4.33189 4.37647 4.42298 4.43648 4.55072 4.59022 4.67525 4.70103 4.80671 4.87238 4.94009 5.05516 5.10442 5.12101 5.15332 5.16710 5.22149 5.24046 5.43959 5.50485 5.52466 5.60987 5.72993 5.84174 5.96311 6.03997 6.25120 6.55607 6.75232 6.84641 7.36831 7.45894 8.91396 Molecular weight = 322.18amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.002600 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.832187 B =10766.889271 C =11043.076773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.508 3.492 3 O -0.580 6.580 4 N -0.700 5.700 5 C 0.207 3.793 6 H 0.106 0.894 7 C -0.137 4.137 8 C -0.070 4.070 9 C -0.142 4.142 10 C -0.084 4.084 11 C -0.164 4.164 12 C 0.095 3.905 13 F -0.142 7.142 14 C 0.066 3.934 15 H 0.084 0.916 16 C -0.180 4.180 17 N -0.671 5.671 18 C 0.082 3.918 19 C -0.086 4.086 20 C 0.026 3.974 21 C -0.540 4.540 22 H 0.061 0.939 23 C -0.004 4.004 24 N -0.936 5.936 25 Si 0.968 3.032 26 H -0.260 1.260 27 H -0.278 1.278 28 H -0.277 1.277 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.414 0.586 33 H 0.122 0.878 34 H 0.143 0.857 35 H 0.161 0.839 36 H 0.154 0.846 37 H 0.048 0.952 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.343 0.657 41 H 0.044 0.956 42 H 0.019 0.981 43 H 0.054 0.946 44 H 0.052 0.948 45 H -0.015 1.015 46 H -0.012 1.012 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.306 -9.155 27.669 29.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.297 3.703 3 O -0.461 6.461 4 N -0.350 5.350 5 C 0.101 3.899 6 H 0.124 0.876 7 C -0.140 4.140 8 C -0.088 4.088 9 C -0.160 4.160 10 C -0.102 4.102 11 C -0.182 4.182 12 C 0.075 3.925 13 F -0.121 7.121 14 C -0.045 4.045 15 H 0.102 0.898 16 C -0.239 4.239 17 N -0.301 5.301 18 C -0.047 4.047 19 C -0.124 4.124 20 C -0.012 4.012 21 C -0.578 4.578 22 H 0.080 0.920 23 C -0.201 4.201 24 N -0.576 5.576 25 Si 0.792 3.208 26 H -0.184 1.184 27 H -0.204 1.204 28 H -0.203 1.203 29 H 0.126 0.874 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.250 0.750 33 H 0.140 0.860 34 H 0.161 0.839 35 H 0.178 0.822 36 H 0.172 0.828 37 H 0.067 0.933 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.162 0.838 41 H 0.062 0.938 42 H 0.037 0.963 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.003 0.997 46 H 0.007 0.993 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.038 -8.238 27.720 28.937 hybrid contribution 0.453 -0.235 -1.436 1.524 sum 1.491 -8.473 26.284 27.656 Atomic orbital electron populations 1.21902 0.89939 1.05345 1.05658 1.21238 0.91628 0.83315 0.74161 1.90619 1.71449 1.32952 1.51048 1.45636 1.06206 1.09126 1.74036 1.19563 0.81143 0.99722 0.89441 0.87600 1.20068 1.03726 0.95803 0.94375 1.21151 0.95236 0.93463 0.98997 1.21527 1.00923 1.01330 0.92223 1.21369 0.96458 0.92791 0.99581 1.21396 1.02611 0.97511 0.96695 1.17690 1.00427 0.79724 0.94663 1.91463 1.86507 1.36849 1.97275 1.22004 0.92959 1.00445 0.89116 0.89770 1.22531 0.95868 1.02890 1.02640 1.60373 1.59804 1.08018 1.01893 1.21705 0.97784 0.93947 0.91289 1.21322 1.00245 0.98049 0.92831 1.18959 0.94595 0.94016 0.93608 1.21713 1.42782 0.97717 0.95627 0.92033 1.26044 0.95587 0.95138 1.03355 1.70121 1.49068 1.07602 1.30818 0.85352 0.77996 0.78922 0.78493 1.18386 1.20351 1.20287 0.87359 0.90088 0.88261 0.75006 0.86048 0.83946 0.82158 0.82823 0.93303 0.90986 0.91025 0.83791 0.93784 0.96326 0.92762 0.92938 0.99674 0.99340 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 10.32 71.24 0.74 -2.29 16 2 C 0.51 12.82 7.36 87.66 0.64 13.47 16 3 O -0.58 -19.24 13.12 -3.04 -0.04 -19.28 16 4 N -0.70 -14.52 4.97 -446.09 -2.22 -16.74 16 5 C 0.21 4.48 2.33 44.25 0.10 4.58 16 6 H 0.11 1.99 8.02 -2.39 -0.02 1.97 16 7 C -0.14 -2.97 4.24 -19.82 -0.08 -3.05 16 8 C -0.07 -1.56 6.29 22.26 0.14 -1.42 16 9 C -0.14 -2.50 10.04 22.27 0.22 -2.27 16 10 C -0.08 -1.17 10.04 22.26 0.22 -0.95 16 11 C -0.16 -2.54 10.03 22.31 0.22 -2.32 16 12 C 0.09 1.85 7.25 22.38 0.16 2.02 16 13 F -0.14 -2.80 16.71 44.97 0.75 -2.05 16 14 C 0.07 1.68 1.32 44.92 0.06 1.74 16 15 H 0.08 2.71 4.08 -2.39 -0.01 2.70 16 16 C -0.18 -4.00 8.69 71.98 0.63 -3.37 16 17 N -0.67 -19.19 5.97 -491.55 -2.94 -22.13 16 18 C 0.08 3.04 5.48 86.30 0.47 3.52 16 19 C -0.09 -3.71 5.41 30.59 0.17 -3.54 16 20 C 0.03 1.43 4.97 29.85 0.15 1.58 16 21 C -0.54 -31.71 9.11 25.60 0.23 -31.48 16 22 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 23 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 24 N -0.94 -58.64 13.29 21.45 0.28 -58.36 16 25 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 26 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 28 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 29 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.08 1.60 8.12 -2.39 -0.02 1.58 16 31 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.41 6.38 8.83 -92.71 -0.82 5.56 16 33 H 0.12 3.15 5.36 -2.91 -0.02 3.14 16 34 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 36 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.05 1.21 7.45 -2.39 -0.02 1.19 16 38 H 0.07 1.48 5.98 -2.39 -0.01 1.46 16 39 H 0.07 1.36 8.13 -2.39 -0.02 1.34 16 40 H 0.34 8.79 8.47 -89.69 -0.76 8.03 16 41 H 0.04 1.83 8.05 -2.39 -0.02 1.82 16 42 H 0.02 0.70 7.44 -2.39 -0.02 0.68 16 43 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 44 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 45 H -0.02 -0.92 8.14 -2.38 -0.02 -0.94 16 46 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 47 H 0.26 15.41 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -73.35 382.29 1.82 -71.53 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: -0.59 Total: 23.45 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 4.54 Total: -23.57 kcal Atomic # 7 Polarization: -92.36 SS G_CDS: -4.87 Total: -97.23 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.04 Total: -19.28 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.75 Total: -2.05 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -73.35 1.82 -71.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924943529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.679 kcal (2) G-P(sol) polarization free energy of solvation -73.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds