Wall clock time and date at job start Sat Apr 11 2020 00:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.47038 * 2 1 4 4 C 1.34776 * 119.99872 * 274.61521 * 3 2 1 5 5 O 1.21538 * 119.99737 * 184.48082 * 4 3 2 6 6 C 1.48007 * 120.00363 * 4.47862 * 4 3 2 7 7 N 1.34187 * 126.69425 * 5.41881 * 6 4 3 8 8 N 1.28984 * 107.25075 * 179.97438 * 7 6 4 9 9 N 1.28723 * 108.98896 * 0.02562 * 8 7 6 10 10 C 1.46495 * 125.32150 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47198 * 359.97129 * 10 9 8 12 12 C 1.52994 * 109.47270 * 119.97680 * 10 9 8 13 13 C 1.53007 * 109.46922 * 239.97317 * 10 9 8 14 14 N 1.28876 * 109.35785 * 359.76191 * 9 8 7 15 15 C 1.46499 * 119.99828 * 94.61265 * 3 2 1 16 16 C 1.53497 * 114.20583 * 232.57579 * 15 3 2 17 17 N 1.47070 * 87.98328 * 220.14933 * 16 15 3 18 18 C 1.36937 * 136.05441 * 207.08142 * 17 16 15 19 19 H 1.08001 * 120.00211 * 5.16198 * 18 17 16 20 20 C 1.38809 * 119.99666 * 185.15482 * 18 17 16 21 21 N 1.31621 * 120.00442 * 5.13846 * 20 18 17 22 22 Si 1.86806 * 119.99684 * 185.13421 * 20 18 17 23 23 H 1.48502 * 109.47020 * 265.00107 * 22 20 18 24 24 H 1.48496 * 109.47309 * 25.00331 * 22 20 18 25 25 H 1.48501 * 109.46839 * 145.00714 * 22 20 18 26 26 C 1.47064 * 87.88478 * 27.34313 * 17 16 15 27 27 H 1.08994 * 109.47422 * 59.99647 * 1 2 3 28 28 H 1.09001 * 109.46937 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46690 * 299.99688 * 1 2 3 30 30 H 1.09001 * 109.46690 * 240.00312 * 2 1 3 31 31 H 1.08994 * 109.47422 * 120.00353 * 2 1 3 32 32 H 1.08998 * 109.46824 * 60.00042 * 11 10 9 33 33 H 1.09002 * 109.47114 * 180.02562 * 11 10 9 34 34 H 1.09001 * 109.47201 * 300.00020 * 11 10 9 35 35 H 1.08994 * 109.47506 * 59.99709 * 12 10 9 36 36 H 1.08997 * 109.47345 * 179.97438 * 12 10 9 37 37 H 1.09002 * 109.46801 * 299.99476 * 12 10 9 38 38 H 1.08995 * 109.46965 * 59.99838 * 13 10 9 39 39 H 1.08997 * 109.46974 * 180.02562 * 13 10 9 40 40 H 1.09003 * 109.47176 * 300.00090 * 13 10 9 41 41 H 1.09000 * 113.28050 * 5.64633 * 15 3 2 42 42 H 1.09001 * 113.46684 * 105.37271 * 16 15 3 43 43 H 1.08996 * 113.46788 * 334.93084 * 16 15 3 44 44 H 0.96993 * 119.99862 * 180.02562 * 21 20 18 45 45 H 1.08996 * 113.46542 * 87.43888 * 26 17 16 46 46 H 1.08996 * 113.46913 * 217.87315 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1544 2.0479 -1.1634 5 8 2.6358 3.1638 -1.1716 6 6 1.7177 1.4210 -2.4311 7 7 1.0812 0.2476 -2.5677 8 7 0.8815 0.0654 -3.8289 9 7 1.3632 1.0671 -4.4783 10 6 1.3300 1.2278 -5.9340 11 6 0.6344 0.0198 -6.5647 12 6 0.5611 2.5019 -6.2891 13 6 2.7600 1.3294 -6.4686 14 7 1.8742 1.9091 -3.6472 15 6 2.3587 2.0378 1.2646 16 6 1.6734 3.3953 1.4733 17 7 2.9381 3.8882 2.0395 18 6 3.3059 4.8524 2.9397 19 1 2.5501 5.4072 3.4757 20 6 4.6502 5.1164 3.1633 21 7 5.5688 4.5133 2.4389 22 14 5.1555 6.3280 4.4924 23 1 5.3570 7.6696 3.8885 24 1 4.0898 6.4043 5.5237 25 1 6.4215 5.8731 5.1214 26 6 3.6343 2.8944 1.2086 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 -0.3843 -0.0526 -6.1839 33 1 0.6101 0.1392 -7.6479 34 1 1.1822 -0.8880 -6.3118 35 1 1.0567 3.3625 -5.8398 36 1 0.5368 2.6218 -7.3722 37 1 -0.4576 2.4295 -5.9083 38 1 3.3078 0.4216 -6.2156 39 1 2.7353 1.4494 -7.5517 40 1 3.2556 2.1899 -6.0192 41 1 2.3015 1.3712 2.1251 42 1 0.8577 3.3633 2.1957 43 1 1.3935 3.8880 0.5422 44 1 6.5081 4.6976 2.5955 45 1 3.8713 3.2551 0.2077 46 1 4.4892 2.4357 1.7052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950380995.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:37 Heat of formation + Delta-G solvation = 180.936839 kcal Electronic energy + Delta-G solvation = -28329.199685 eV Core-core repulsion = 24488.829515 eV Total energy + Delta-G solvation = -3840.370170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.45403 -40.08711 -37.97431 -36.93654 -35.48466 -33.50522 -32.50946 -31.89897 -29.99701 -28.13788 -28.02157 -27.51349 -25.54887 -24.55279 -24.39471 -23.16598 -22.94646 -20.92414 -20.32530 -19.03529 -17.48108 -17.24213 -16.83329 -16.40576 -15.65977 -15.02060 -14.77354 -14.67171 -14.55908 -14.41206 -14.12111 -13.71608 -13.37154 -13.28966 -13.00105 -12.86596 -12.78627 -12.40065 -12.32429 -12.24447 -12.18411 -11.99239 -11.64589 -11.54608 -11.42754 -11.25274 -11.20278 -10.95566 -10.84561 -10.76409 -10.52807 -10.32166 -10.04280 -9.96277 -9.48128 -9.28598 -8.56084 -8.06499 -6.70451 -5.66043 -2.96225 1.03359 1.53739 1.57908 2.93591 3.34260 3.46503 3.50697 3.53302 3.75952 4.00158 4.04524 4.15147 4.49433 4.58383 4.90362 4.95821 4.98029 5.11933 5.12290 5.17263 5.17890 5.25730 5.38007 5.43032 5.48243 5.56645 5.62257 5.62448 5.64099 5.71586 5.77043 5.91170 5.98685 6.03580 6.11734 6.41139 6.46674 6.59531 6.66388 6.98684 7.33077 7.59047 7.64809 7.81586 8.07637 8.15299 8.44436 9.14805 9.81062 10.77396 11.52496 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.020955 B = 0.003083 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.873210 B = 9078.521757 C = 9914.605333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.103 3.897 3 N -0.577 5.577 4 C 0.603 3.397 5 O -0.481 6.481 6 C 0.135 3.865 7 N -0.253 5.253 8 N -0.067 5.067 9 N -0.129 5.129 10 C 0.177 3.823 11 C -0.151 4.151 12 C -0.161 4.161 13 C -0.161 4.161 14 N -0.247 5.247 15 C 0.084 3.916 16 C 0.110 3.890 17 N -0.601 5.601 18 C -0.214 4.214 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.916 5.916 22 Si 0.912 3.088 23 H -0.290 1.290 24 H -0.280 1.280 25 H -0.290 1.290 26 C 0.144 3.856 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.037 0.963 43 H 0.043 0.957 44 H 0.253 0.747 45 H 0.070 0.930 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.176 -13.270 -19.646 26.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.020 4.020 3 N -0.310 5.310 4 C 0.384 3.616 5 O -0.351 6.351 6 C -0.149 4.149 7 N -0.127 5.127 8 N -0.059 5.059 9 N -0.043 5.043 10 C 0.097 3.903 11 C -0.210 4.210 12 C -0.219 4.219 13 C -0.219 4.219 14 N -0.099 5.099 15 C -0.019 4.019 16 C -0.017 4.017 17 N -0.327 5.327 18 C -0.341 4.341 19 H 0.099 0.901 20 C -0.205 4.205 21 N -0.563 5.563 22 Si 0.743 3.257 23 H -0.217 1.217 24 H -0.206 1.206 25 H -0.217 1.217 26 C 0.018 3.982 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.133 0.867 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.917 -12.847 -19.820 26.020 hybrid contribution 0.455 0.966 0.840 1.358 sum -10.462 -11.881 -18.979 24.715 Atomic orbital electron populations 1.22082 0.95683 1.01874 1.01881 1.21786 0.94973 0.81921 1.03354 1.47758 1.63693 1.14054 1.05521 1.16268 0.79981 0.85006 0.80379 1.90906 1.41462 1.17952 1.84739 1.25643 1.02429 0.92315 0.94481 1.76336 1.15024 1.14789 1.06585 1.78846 1.15702 1.11955 0.99445 1.50694 1.33276 1.10062 1.10286 1.21462 0.99628 0.99539 0.69709 1.22090 1.01759 0.95759 1.01352 1.22258 1.00556 0.95530 1.03571 1.22261 0.92630 1.04438 1.02590 1.75038 1.17010 1.18303 0.99573 1.24023 1.01717 0.93234 0.82934 1.22728 0.91361 0.91129 0.96511 1.45332 1.01687 1.40245 1.45453 1.18907 0.91323 1.11546 1.12369 0.90104 1.24827 0.95649 1.00214 0.99817 1.69874 0.99711 1.45737 1.40948 0.86099 0.77870 0.80629 0.81152 1.21693 1.20567 1.21675 1.22743 0.92166 0.86770 0.96507 0.92392 0.91846 0.92806 0.89376 0.90229 0.90565 0.89231 0.90539 0.90093 0.89084 0.91343 0.91297 0.89083 0.90090 0.86712 0.94500 0.93916 0.93746 0.91231 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.63 37.16 0.36 -1.53 16 2 C 0.10 1.37 5.72 -4.04 -0.02 1.34 16 3 N -0.58 -10.00 2.77 -166.78 -0.46 -10.46 16 4 C 0.60 11.58 7.13 -12.26 -0.09 11.49 16 5 O -0.48 -11.23 12.66 5.33 0.07 -11.16 16 6 C 0.14 2.25 7.57 -156.24 -1.18 1.06 16 7 N -0.25 -3.64 7.43 32.10 0.24 -3.41 16 8 N -0.07 -0.86 12.21 60.35 0.74 -0.13 16 9 N -0.13 -1.55 3.72 0.52 0.00 -1.55 16 10 C 0.18 1.34 1.30 -131.82 -0.17 1.17 16 11 C -0.15 -0.77 7.90 37.16 0.29 -0.48 16 12 C -0.16 -1.04 8.66 37.15 0.32 -0.72 16 13 C -0.16 -1.04 8.66 37.16 0.32 -0.72 16 14 N -0.25 -3.82 11.85 32.11 0.38 -3.44 16 15 C 0.08 1.69 4.80 -67.68 -0.32 1.36 16 16 C 0.11 2.52 8.10 -8.50 -0.07 2.45 16 17 N -0.60 -16.67 3.77 -184.62 -0.70 -17.37 16 18 C -0.21 -6.34 10.74 -15.06 -0.16 -6.51 16 19 H 0.08 2.29 7.83 -52.49 -0.41 1.88 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -28.69 11.73 55.49 0.65 -28.04 16 22 Si 0.91 23.00 29.56 -169.99 -5.02 17.97 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 26 C 0.14 3.72 6.61 -8.37 -0.06 3.66 16 27 H 0.06 0.78 6.43 -51.93 -0.33 0.44 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.09 1.17 5.79 -51.93 -0.30 0.87 16 31 H 0.08 0.92 7.90 -51.93 -0.41 0.51 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.12 2.08 7.94 -51.93 -0.41 1.66 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.04 1.04 6.48 -51.93 -0.34 0.71 16 44 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.07 1.97 5.21 -51.93 -0.27 1.69 16 46 H 0.06 1.58 7.47 -51.93 -0.39 1.19 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -36.30 370.39 -6.47 -42.77 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -7.07 Total: -3.02 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: -0.88 Total: 12.24 kcal Atomic # 7 Polarization: -65.24 SS G_CDS: 0.85 Total: -64.39 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.07 Total: -11.16 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.30 -6.47 -42.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950380995.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.706 kcal (2) G-P(sol) polarization free energy of solvation -36.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds