Wall clock time and date at job start Sat Apr 11 2020 00:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.87482 * 2 1 4 4 C 1.54325 * 109.88065 * 121.01765 * 2 1 3 5 5 H 1.08997 * 110.72163 * 215.74373 * 4 2 1 6 6 N 1.46503 * 110.87087 * 338.94229 * 4 2 1 7 7 C 1.36939 * 119.99620 * 200.06164 * 6 4 2 8 8 H 1.08002 * 120.00422 * 0.02562 * 7 6 4 9 9 C 1.38815 * 119.99685 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00122 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99767 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47407 * 59.99575 * 11 9 7 13 13 H 1.48500 * 109.46659 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46778 * 299.99443 * 11 9 7 15 15 C 1.55154 * 102.94303 * 97.37930 * 4 2 1 16 16 C 1.54908 * 101.58289 * 35.49976 * 15 4 2 17 17 N 1.47290 * 109.98499 * 238.92900 * 2 1 3 18 18 C 1.34774 * 125.79121 * 59.43218 * 17 2 1 19 19 O 1.21538 * 120.00413 * 0.02562 * 18 17 2 20 20 C 1.48004 * 119.99929 * 180.02562 * 18 17 2 21 21 N 1.34194 * 126.69592 * 0.02562 * 20 18 17 22 22 N 1.28983 * 107.25026 * 179.97438 * 21 20 18 23 23 N 1.28724 * 108.99155 * 0.02562 * 22 21 20 24 24 C 1.46491 * 125.32453 * 179.97438 * 23 22 21 25 25 C 1.53006 * 109.47085 * 359.97028 * 24 23 22 26 26 C 1.53005 * 109.47342 * 119.96694 * 24 23 22 27 27 C 1.52994 * 109.47321 * 239.97000 * 24 23 22 28 28 N 1.28874 * 109.35504 * 359.72076 * 23 22 21 29 29 H 1.09005 * 109.47358 * 298.98523 * 1 2 3 30 30 H 1.09002 * 109.47151 * 58.98048 * 1 2 3 31 31 H 1.08998 * 109.47688 * 178.98565 * 1 2 3 32 32 H 0.96998 * 120.00254 * 20.06980 * 6 4 2 33 33 H 0.96995 * 119.99947 * 179.97438 * 10 9 7 34 34 H 1.09008 * 111.00345 * 277.42446 * 15 4 2 35 35 H 1.08999 * 111.00564 * 153.57779 * 15 4 2 36 36 H 1.09002 * 110.36632 * 81.83114 * 16 15 4 37 37 H 1.08995 * 110.36781 * 204.04351 * 16 15 4 38 38 H 1.09000 * 109.46997 * 59.99918 * 25 24 23 39 39 H 1.09002 * 109.46944 * 180.02562 * 25 24 23 40 40 H 1.08996 * 109.46848 * 300.00397 * 25 24 23 41 41 H 1.08998 * 109.46506 * 60.00281 * 26 24 23 42 42 H 1.09002 * 109.47322 * 179.97438 * 26 24 23 43 43 H 1.09000 * 109.47281 * 300.00413 * 26 24 23 44 44 H 1.09004 * 109.46855 * 60.00128 * 27 24 23 45 45 H 1.09002 * 109.47483 * 180.02562 * 27 24 23 46 46 H 1.08998 * 109.47310 * 300.00199 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9640 -0.2794 1.6203 6 7 1.0309 -0.8031 2.2902 7 6 1.3922 -1.0397 3.5897 8 1 2.4319 -1.1851 3.8433 9 6 0.4220 -1.0926 4.5811 10 7 -0.8450 -0.9148 4.2722 11 14 0.9149 -1.4146 6.3540 12 1 1.8389 -0.3464 6.8127 13 1 -0.2976 -1.4215 7.2113 14 1 1.5952 -2.7313 6.4472 15 6 2.3556 -2.1674 0.6945 16 6 2.8617 -1.8473 -0.7342 17 7 2.0334 -0.7144 -1.1856 18 6 1.7803 -0.3885 -2.4686 19 8 1.0805 0.5716 -2.7252 20 6 2.3545 -1.1998 -3.5653 21 7 3.1395 -2.2806 -3.4370 22 7 3.4217 -2.6917 -4.6265 23 7 2.8510 -1.9189 -5.4833 24 6 2.9349 -2.0599 -6.9390 25 6 3.8071 -3.2684 -7.2849 26 6 1.5314 -2.2629 -7.5135 27 6 3.5537 -0.7959 -7.5390 28 7 2.1899 -1.0049 -4.8601 29 1 -0.3634 0.4980 0.8990 30 1 -0.3633 0.5296 -0.8807 31 1 -0.3634 -1.0274 -0.0182 32 1 0.0972 -0.6723 2.0625 33 1 -1.5229 -0.9522 4.9649 34 1 1.4502 -2.7736 0.6616 35 1 3.1310 -2.6578 1.2830 36 1 3.9134 -1.5619 -0.7090 37 1 2.7182 -2.7068 -1.3889 38 1 3.3663 -4.1690 -6.8574 39 1 3.8699 -3.3731 -8.3680 40 1 4.8069 -3.1239 -6.8756 41 1 0.9100 -1.4019 -7.2670 42 1 1.5937 -2.3673 -8.5967 43 1 1.0905 -3.1634 -7.0860 44 1 4.5536 -0.6514 -7.1298 45 1 3.6156 -0.9006 -8.6222 46 1 2.9323 0.0651 -7.2926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986298133.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:43 Heat of formation + Delta-G solvation = 121.805740 kcal Electronic energy + Delta-G solvation = -27796.127950 eV Core-core repulsion = 23953.193662 eV Total energy + Delta-G solvation = -3842.934287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.56852 -39.96125 -38.05928 -37.45805 -34.27910 -33.63733 -32.74276 -31.49588 -30.67083 -29.00644 -28.14803 -28.12143 -25.52902 -25.19297 -24.62298 -23.33294 -22.44320 -21.01294 -20.14676 -18.81924 -17.69570 -17.56169 -17.36260 -16.78241 -15.79828 -15.57032 -14.81171 -14.75897 -14.51758 -14.29459 -14.13222 -13.66666 -13.47927 -13.36567 -13.07265 -12.95596 -12.87549 -12.49531 -12.42743 -12.41546 -12.07440 -12.04237 -11.80333 -11.69277 -11.48578 -11.26980 -11.15352 -11.02215 -10.93850 -10.74325 -10.52574 -10.38835 -10.23972 -10.05376 -9.91393 -9.62407 -8.91380 -8.46248 -6.99987 -5.79183 -3.08891 0.89319 1.40527 1.45077 2.74278 3.16510 3.43998 3.48613 3.49482 3.66143 3.90182 3.95110 4.05863 4.39059 4.57392 4.82662 4.86488 4.87994 5.01444 5.03467 5.08108 5.08974 5.14351 5.26710 5.34795 5.44169 5.49892 5.52063 5.60840 5.63736 5.65781 5.77900 5.89940 5.91819 6.09554 6.21026 6.24897 6.38732 6.56206 6.63901 6.70610 6.83050 7.01433 7.57888 7.68730 7.96404 8.20315 8.39371 9.50939 10.05702 10.40855 11.43281 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.033799 B = 0.002522 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.228162 B =11100.944228 C =11497.689599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 H 0.078 0.922 4 C 0.174 3.826 5 H 0.065 0.935 6 N -0.717 5.717 7 C -0.243 4.243 8 H 0.071 0.929 9 C -0.011 4.011 10 N -0.932 5.932 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C -0.153 4.153 16 C 0.095 3.905 17 N -0.586 5.586 18 C 0.625 3.375 19 O -0.514 6.514 20 C 0.137 3.863 21 N -0.252 5.252 22 N -0.060 5.060 23 N -0.127 5.127 24 C 0.177 3.823 25 C -0.153 4.153 26 C -0.161 4.161 27 C -0.160 4.160 28 N -0.248 5.248 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.391 0.609 33 H 0.257 0.743 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.091 0.909 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.459 -3.757 -26.247 28.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.029 3.971 3 H 0.096 0.904 4 C 0.062 3.938 5 H 0.083 0.917 6 N -0.361 5.361 7 C -0.374 4.374 8 H 0.089 0.911 9 C -0.207 4.207 10 N -0.580 5.580 11 Si 0.740 3.260 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.194 4.194 16 C -0.028 4.028 17 N -0.319 5.319 18 C 0.406 3.594 19 O -0.387 6.387 20 C -0.147 4.147 21 N -0.127 5.127 22 N -0.053 5.053 23 N -0.042 5.042 24 C 0.096 3.904 25 C -0.211 4.211 26 C -0.219 4.219 27 C -0.219 4.219 28 N -0.101 5.101 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.229 0.771 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.424 -3.677 -26.552 28.413 hybrid contribution -0.249 0.042 1.091 1.119 sum 9.175 -3.635 -25.461 27.307 Atomic orbital electron populations 1.22036 0.94208 1.02718 1.02955 1.21995 0.95607 0.95823 0.83663 0.90436 1.21193 0.93266 0.92242 0.87089 0.91666 1.42662 1.05133 1.85364 1.02911 1.19193 0.93002 1.41289 0.83947 0.91055 1.24753 0.95301 1.02529 0.98121 1.69647 0.99329 1.56321 1.32654 0.86248 0.76991 0.78070 0.84728 1.21226 1.21737 1.21226 1.23571 1.01804 1.01042 0.93020 1.22650 0.94230 0.88792 0.97161 1.48349 1.49054 1.30814 1.03731 1.15662 0.80834 0.83020 0.79838 1.90827 1.37836 1.27533 1.82523 1.25341 1.01001 0.96791 0.91592 1.76258 1.13473 1.09831 1.13091 1.78887 1.16109 1.16984 0.93313 1.50726 1.27833 1.15061 1.10551 1.21498 0.99665 0.99615 0.69613 1.22105 1.00062 0.95635 1.03279 1.22264 0.93176 1.04194 1.02274 1.22258 1.01855 0.95649 1.02098 1.74985 1.15702 1.13329 1.06099 0.89784 0.92033 0.92300 0.77097 0.93343 0.90656 0.90351 0.91304 0.89361 0.90457 0.89124 0.90486 0.90181 0.88988 0.91244 0.91283 0.88986 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 7.96 37.16 0.30 -2.76 16 2 C 0.13 2.38 3.48 -66.81 -0.23 2.15 16 3 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 4 C 0.17 3.37 3.45 -66.09 -0.23 3.15 16 5 H 0.07 1.25 8.12 -51.93 -0.42 0.83 16 6 N -0.72 -17.33 5.02 -51.65 -0.26 -17.59 16 7 C -0.24 -6.52 9.98 -15.06 -0.15 -6.67 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 10 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 11 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 15 C -0.15 -2.62 6.77 -24.58 -0.17 -2.79 16 16 C 0.09 1.43 6.15 -2.53 -0.02 1.41 16 17 N -0.59 -9.87 3.09 -163.86 -0.51 -10.38 16 18 C 0.62 11.00 7.65 -12.26 -0.09 10.91 16 19 O -0.51 -10.25 16.03 5.33 0.09 -10.17 16 20 C 0.14 2.16 7.95 -156.24 -1.24 0.92 16 21 N -0.25 -3.71 9.68 32.10 0.31 -3.40 16 22 N -0.06 -0.77 12.21 60.35 0.74 -0.04 16 23 N -0.13 -1.44 3.72 0.52 0.00 -1.44 16 24 C 0.18 1.18 1.30 -131.82 -0.17 1.01 16 25 C -0.15 -0.70 7.90 37.16 0.29 -0.41 16 26 C -0.16 -0.88 8.66 37.16 0.32 -0.56 16 27 C -0.16 -0.85 8.66 37.15 0.32 -0.53 16 28 N -0.25 -3.55 11.85 32.11 0.38 -3.16 16 29 H 0.08 1.70 6.68 -51.93 -0.35 1.36 16 30 H 0.06 1.16 6.79 -51.93 -0.35 0.80 16 31 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 32 H 0.39 9.97 4.95 -40.82 -0.20 9.77 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.07 1.41 8.14 -51.92 -0.42 0.98 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.31 6.18 -51.93 -0.32 0.98 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -32.58 373.75 -6.19 -38.77 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.10 Total: 6.25 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -1.16 Total: 5.44 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: 1.39 Total: -62.90 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.58 -6.19 -38.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986298133.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.572 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds