Wall clock time and date at job start Sat Apr 11 2020 00:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.87482 * 2 1 4 4 C 1.54325 * 109.88065 * 121.01765 * 2 1 3 5 5 H 1.08997 * 110.72163 * 215.74373 * 4 2 1 6 6 N 1.46503 * 110.87087 * 338.94229 * 4 2 1 7 7 C 1.36939 * 119.99620 * 200.06164 * 6 4 2 8 8 H 1.08002 * 120.00422 * 0.02562 * 7 6 4 9 9 C 1.38815 * 119.99685 * 180.02562 * 7 6 4 10 10 N 1.31619 * 120.00122 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99767 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47407 * 59.99575 * 11 9 7 13 13 H 1.48500 * 109.46659 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46778 * 299.99443 * 11 9 7 15 15 C 1.55154 * 102.94303 * 97.37930 * 4 2 1 16 16 C 1.54908 * 101.58289 * 35.49976 * 15 4 2 17 17 N 1.47290 * 109.98499 * 238.92900 * 2 1 3 18 18 C 1.34774 * 125.79121 * 59.43218 * 17 2 1 19 19 O 1.21538 * 120.00413 * 0.02562 * 18 17 2 20 20 C 1.48004 * 119.99929 * 180.02562 * 18 17 2 21 21 N 1.34194 * 126.69592 * 0.02562 * 20 18 17 22 22 N 1.28983 * 107.25026 * 179.97438 * 21 20 18 23 23 N 1.28724 * 108.99155 * 0.02562 * 22 21 20 24 24 C 1.46491 * 125.32453 * 179.97438 * 23 22 21 25 25 C 1.53006 * 109.47085 * 359.97028 * 24 23 22 26 26 C 1.53005 * 109.47342 * 119.96694 * 24 23 22 27 27 C 1.52994 * 109.47321 * 239.97000 * 24 23 22 28 28 N 1.28874 * 109.35504 * 359.72076 * 23 22 21 29 29 H 1.09005 * 109.47358 * 298.98523 * 1 2 3 30 30 H 1.09002 * 109.47151 * 58.98048 * 1 2 3 31 31 H 1.08998 * 109.47688 * 178.98565 * 1 2 3 32 32 H 0.96998 * 120.00254 * 20.06980 * 6 4 2 33 33 H 0.96995 * 119.99947 * 179.97438 * 10 9 7 34 34 H 1.09008 * 111.00345 * 277.42446 * 15 4 2 35 35 H 1.08999 * 111.00564 * 153.57779 * 15 4 2 36 36 H 1.09002 * 110.36632 * 81.83114 * 16 15 4 37 37 H 1.08995 * 110.36781 * 204.04351 * 16 15 4 38 38 H 1.09000 * 109.46997 * 59.99918 * 25 24 23 39 39 H 1.09002 * 109.46944 * 180.02562 * 25 24 23 40 40 H 1.08996 * 109.46848 * 300.00397 * 25 24 23 41 41 H 1.08998 * 109.46506 * 60.00281 * 26 24 23 42 42 H 1.09002 * 109.47322 * 179.97438 * 26 24 23 43 43 H 1.09000 * 109.47281 * 300.00413 * 26 24 23 44 44 H 1.09004 * 109.46855 * 60.00128 * 27 24 23 45 45 H 1.09002 * 109.47483 * 180.02562 * 27 24 23 46 46 H 1.08998 * 109.47310 * 300.00199 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2438 5 1 2.9640 -0.2794 1.6203 6 7 1.0309 -0.8031 2.2902 7 6 1.3922 -1.0397 3.5897 8 1 2.4319 -1.1851 3.8433 9 6 0.4220 -1.0926 4.5811 10 7 -0.8450 -0.9148 4.2722 11 14 0.9149 -1.4146 6.3540 12 1 1.8389 -0.3464 6.8127 13 1 -0.2976 -1.4215 7.2113 14 1 1.5952 -2.7313 6.4472 15 6 2.3556 -2.1674 0.6945 16 6 2.8617 -1.8473 -0.7342 17 7 2.0334 -0.7144 -1.1856 18 6 1.7803 -0.3885 -2.4686 19 8 1.0805 0.5716 -2.7252 20 6 2.3545 -1.1998 -3.5653 21 7 3.1395 -2.2806 -3.4370 22 7 3.4217 -2.6917 -4.6265 23 7 2.8510 -1.9189 -5.4833 24 6 2.9349 -2.0599 -6.9390 25 6 3.8071 -3.2684 -7.2849 26 6 1.5314 -2.2629 -7.5135 27 6 3.5537 -0.7959 -7.5390 28 7 2.1899 -1.0049 -4.8601 29 1 -0.3634 0.4980 0.8990 30 1 -0.3633 0.5296 -0.8807 31 1 -0.3634 -1.0274 -0.0182 32 1 0.0972 -0.6723 2.0625 33 1 -1.5229 -0.9522 4.9649 34 1 1.4502 -2.7736 0.6616 35 1 3.1310 -2.6578 1.2830 36 1 3.9134 -1.5619 -0.7090 37 1 2.7182 -2.7068 -1.3889 38 1 3.3663 -4.1690 -6.8574 39 1 3.8699 -3.3731 -8.3680 40 1 4.8069 -3.1239 -6.8756 41 1 0.9100 -1.4019 -7.2670 42 1 1.5937 -2.3673 -8.5967 43 1 1.0905 -3.1634 -7.0860 44 1 4.5536 -0.6514 -7.1298 45 1 3.6156 -0.9006 -8.6222 46 1 2.9323 0.0651 -7.2926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986298133.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:43 Heat of formation + Delta-G solvation = 100.155240 kcal Electronic energy + Delta-G solvation = -27797.066786 eV Core-core repulsion = 23953.193662 eV Total energy + Delta-G solvation = -3843.873123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.60567 -41.38101 -39.06709 -38.58551 -36.01073 -34.69685 -33.97398 -33.11505 -32.14123 -30.72544 -28.60583 -28.53649 -26.82037 -26.73240 -25.62462 -25.14880 -23.78732 -21.89635 -21.46270 -20.27008 -19.42794 -18.66315 -18.56223 -17.74888 -17.17928 -17.03356 -16.41047 -15.92995 -15.52017 -15.30184 -15.24568 -15.12992 -14.83656 -14.56301 -14.10294 -13.95005 -13.67237 -13.48860 -13.32627 -13.26141 -13.22194 -13.04900 -12.92351 -12.84802 -12.83352 -12.65073 -12.60688 -12.21176 -12.12346 -12.10012 -12.09755 -12.03094 -11.61806 -11.55440 -11.45858 -11.38552 -10.87402 -9.86517 -8.98966 -7.90484 -5.19526 -0.18127 0.25093 0.62123 1.48759 1.52852 1.54606 1.60364 1.84070 2.58919 2.66895 2.90826 3.40254 3.48755 3.51382 3.62311 3.69340 3.74171 3.92997 3.95749 4.16661 4.27023 4.35997 4.40329 4.41654 4.52636 4.53689 4.58749 4.60624 4.63948 4.73279 4.73480 4.85108 4.89452 5.02372 5.05214 5.11135 5.18143 5.19600 5.22486 5.23272 5.26803 5.47525 5.58333 6.20809 6.30890 6.67113 7.04449 7.38519 8.10906 8.35276 9.32974 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.033799 B = 0.002522 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.228162 B =11100.944228 C =11497.689599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.138 3.862 3 H 0.082 0.918 4 C 0.169 3.831 5 H 0.075 0.925 6 N -0.731 5.731 7 C -0.237 4.237 8 H 0.083 0.917 9 C -0.075 4.075 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.278 1.278 13 H -0.301 1.301 14 H -0.277 1.277 15 C -0.143 4.143 16 C 0.105 3.895 17 N -0.585 5.585 18 C 0.626 3.374 19 O -0.545 6.545 20 C 0.119 3.881 21 N -0.262 5.262 22 N -0.058 5.058 23 N -0.108 5.108 24 C 0.159 3.841 25 C -0.149 4.149 26 C -0.158 4.158 27 C -0.157 4.157 28 N -0.257 5.257 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.381 0.619 33 H 0.250 0.750 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.128 0.872 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.130 0.870 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.130 0.870 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.658 -4.772 -28.331 31.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.034 3.966 3 H 0.100 0.900 4 C 0.059 3.941 5 H 0.093 0.907 6 N -0.373 5.373 7 C -0.369 4.369 8 H 0.100 0.900 9 C -0.267 4.267 10 N -0.621 5.621 11 Si 0.802 3.198 12 H -0.204 1.204 13 H -0.227 1.227 14 H -0.203 1.203 15 C -0.184 4.184 16 C -0.017 4.017 17 N -0.317 5.317 18 C 0.409 3.591 19 O -0.420 6.420 20 C -0.164 4.164 21 N -0.136 5.136 22 N -0.050 5.050 23 N -0.025 5.025 24 C 0.080 3.920 25 C -0.207 4.207 26 C -0.216 4.216 27 C -0.215 4.215 28 N -0.111 5.111 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.217 0.783 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.146 0.854 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.148 0.852 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.148 0.852 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.694 -4.721 -28.666 31.317 hybrid contribution -0.875 0.339 1.511 1.779 sum 10.819 -4.382 -27.154 29.557 Atomic orbital electron populations 1.21865 0.95090 1.01710 1.01937 1.21813 0.94779 0.96083 0.83891 0.90048 1.21371 0.92368 0.93899 0.86500 0.90735 1.42826 1.05679 1.85517 1.03307 1.19615 0.93356 1.38964 0.84974 0.89954 1.25544 0.95386 1.03781 1.02033 1.69813 1.00300 1.58673 1.33351 0.85221 0.76246 0.78268 0.80055 1.20414 1.22745 1.20308 1.23396 1.01544 0.99042 0.94370 1.22676 0.94870 0.88490 0.95650 1.48315 1.49062 1.31009 1.03329 1.15828 0.80308 0.82776 0.80221 1.90801 1.39206 1.28925 1.83067 1.24930 1.02348 0.97534 0.91622 1.76197 1.13614 1.09577 1.14168 1.78814 1.16128 1.17001 0.93072 1.51331 1.25820 1.13449 1.11918 1.22236 1.01166 1.01452 0.67105 1.22180 0.98941 0.93973 1.05622 1.22316 0.91845 1.02919 1.04561 1.22307 1.00820 0.94068 1.04331 1.74949 1.16199 1.14249 1.05730 0.91479 0.92125 0.93309 0.78258 0.94131 0.92474 0.88913 0.89090 0.88627 0.91222 0.85411 0.91035 0.91941 0.85158 0.92071 0.91846 0.85192 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.78 7.96 71.98 0.57 -5.20 16 2 C 0.14 4.97 3.48 45.29 0.16 5.13 16 3 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 4 C 0.17 6.44 3.45 46.18 0.16 6.60 16 5 H 0.07 2.74 8.12 -2.39 -0.02 2.72 16 6 N -0.73 -35.58 5.02 -317.32 -1.59 -37.18 16 7 C -0.24 -12.67 9.98 84.03 0.84 -11.83 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 9 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 10 N -0.97 -58.87 13.06 21.65 0.28 -58.59 16 11 Si 0.97 45.44 29.55 68.60 2.03 47.46 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 14 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 15 C -0.14 -4.72 6.77 31.98 0.22 -4.50 16 16 C 0.11 3.01 6.15 86.85 0.53 3.55 16 17 N -0.58 -19.39 3.09 -790.62 -2.44 -21.83 16 18 C 0.63 22.02 7.65 86.83 0.66 22.68 16 19 O -0.54 -22.03 16.03 -3.84 -0.06 -22.09 16 20 C 0.12 3.71 7.95 137.15 1.09 4.80 16 21 N -0.26 -7.43 9.68 -52.36 -0.51 -7.93 16 22 N -0.06 -1.41 12.21 37.02 0.45 -0.96 16 23 N -0.11 -2.32 3.72 -152.26 -0.57 -2.89 16 24 C 0.16 1.76 1.30 3.61 0.00 1.77 16 25 C -0.15 -0.92 7.90 71.98 0.57 -0.36 16 26 C -0.16 -1.38 8.66 71.98 0.62 -0.75 16 27 C -0.16 -1.27 8.66 71.98 0.62 -0.65 16 28 N -0.26 -7.22 11.85 -52.31 -0.62 -7.84 16 29 H 0.07 2.84 6.68 -2.38 -0.02 2.83 16 30 H 0.06 2.35 6.79 -2.39 -0.02 2.34 16 31 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 32 H 0.38 20.00 4.95 -92.71 -0.46 19.54 16 33 H 0.25 14.84 8.31 -92.71 -0.77 14.06 16 34 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 35 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 36 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.10 2.68 6.18 -2.39 -0.01 2.67 16 38 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.13 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 45 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -71.56 373.75 4.02 -67.53 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.53 Total: 26.85 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: 6.52 Total: 17.47 kcal Atomic # 7 Polarization: -132.23 SS G_CDS: -5.00 Total: -137.23 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.06 Total: -22.09 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -71.56 4.02 -67.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986298133.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.688 kcal (2) G-P(sol) polarization free energy of solvation -71.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds