Wall clock time and date at job start Sat Apr 11 2020 00:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.40849 * 2 1 4 4 C 1.54904 * 110.36792 * 122.29296 * 2 1 3 5 5 C 1.55160 * 101.58219 * 155.84687 * 4 2 1 6 6 H 1.09008 * 110.71474 * 83.04057 * 5 4 2 7 7 N 1.46499 * 110.72231 * 206.13707 * 5 4 2 8 8 C 1.36939 * 119.99933 * 205.27701 * 7 5 4 9 9 H 1.08001 * 119.99700 * 359.72658 * 8 7 5 10 10 C 1.38810 * 120.00095 * 179.71972 * 8 7 5 11 11 N 1.31624 * 119.99740 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00044 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47173 * 60.00435 * 12 10 8 14 14 H 1.48497 * 109.47172 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47132 * 300.00314 * 12 10 8 16 16 C 1.54322 * 102.94285 * 324.50166 * 5 4 2 17 17 N 1.47026 * 107.27058 * 22.19125 * 16 5 4 18 18 C 1.34778 * 125.64928 * 181.02541 * 17 16 5 19 19 O 1.21531 * 120.00002 * 180.02562 * 18 17 16 20 20 C 1.48008 * 119.99926 * 0.03913 * 18 17 16 21 21 N 1.34191 * 126.69426 * 0.02624 * 20 18 17 22 22 N 1.28983 * 107.24573 * 180.02562 * 21 20 18 23 23 N 1.28720 * 108.99119 * 359.97438 * 22 21 20 24 24 C 1.46496 * 125.31932 * 179.97438 * 23 22 21 25 25 C 1.53005 * 109.47222 * 359.97438 * 24 23 22 26 26 C 1.52993 * 109.47253 * 119.97628 * 24 23 22 27 27 C 1.53001 * 109.47072 * 239.97897 * 24 23 22 28 28 N 1.28871 * 109.35689 * 359.73094 * 23 22 21 29 29 H 1.09008 * 109.47298 * 297.70495 * 1 2 3 30 30 H 1.08998 * 109.47694 * 57.70472 * 1 2 3 31 31 H 1.09004 * 109.47437 * 177.70580 * 1 2 3 32 32 H 1.09007 * 111.00597 * 37.77780 * 4 2 1 33 33 H 1.09003 * 111.00873 * 273.92219 * 4 2 1 34 34 H 0.97001 * 119.99790 * 24.99674 * 7 5 4 35 35 H 0.96998 * 119.99409 * 179.97438 * 11 10 8 36 36 H 1.09002 * 109.88400 * 141.60596 * 16 5 4 37 37 H 1.08995 * 109.88111 * 262.77868 * 16 5 4 38 38 H 1.09001 * 109.46872 * 60.00147 * 25 24 23 39 39 H 1.09003 * 109.47118 * 179.97438 * 25 24 23 40 40 H 1.08995 * 109.47371 * 300.00132 * 25 24 23 41 41 H 1.09007 * 109.47428 * 60.00068 * 26 24 23 42 42 H 1.09003 * 109.47558 * 180.02562 * 26 24 23 43 43 H 1.09001 * 109.47277 * 300.00120 * 26 24 23 44 44 H 1.08995 * 109.47159 * 60.00090 * 27 24 23 45 45 H 1.09003 * 109.46871 * 180.02562 * 27 24 23 46 46 H 1.08997 * 109.47109 * 299.99908 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0691 -0.7758 1.2276 5 6 3.4778 -1.1997 0.7341 6 1 4.1952 -0.3911 0.8750 7 7 3.9250 -2.4128 1.4229 8 6 5.2632 -2.6734 1.5513 9 1 5.9888 -1.9868 1.1409 10 6 5.6871 -3.8199 2.2091 11 7 4.8027 -4.6569 2.7089 12 14 7.5125 -4.1757 2.3836 13 1 8.1627 -3.0710 3.1334 14 1 7.7000 -5.4516 3.1199 15 1 8.1261 -4.2877 1.0359 16 6 3.2494 -1.4768 -0.7668 17 7 2.0431 -0.7383 -1.1683 18 6 1.4971 -0.7362 -2.4006 19 8 0.4944 -0.0856 -2.6198 20 6 2.1187 -1.5266 -3.4867 21 7 3.2193 -2.2888 -3.3949 22 7 3.4255 -2.8044 -4.5590 23 7 2.5073 -2.3995 -5.3652 24 6 2.3990 -2.7675 -6.7790 25 6 3.5472 -3.7080 -7.1507 26 6 1.0632 -3.4728 -7.0216 27 6 2.4737 -1.5059 -7.6415 28 7 1.6954 -1.6239 -4.7328 29 1 -0.3634 0.4778 0.9099 30 1 -0.3634 0.5490 -0.8686 31 1 -0.3634 -1.0269 -0.0411 32 1 1.4511 -1.6481 1.4408 33 1 2.1399 -0.1263 2.1001 34 1 3.2732 -3.0294 1.7916 35 1 5.0989 -5.4582 3.1682 36 1 4.1065 -1.1279 -1.3428 37 1 3.1013 -2.5445 -0.9282 38 1 3.4941 -4.6067 -6.5362 39 1 3.4664 -3.9821 -8.2026 40 1 4.4989 -3.2055 -6.9779 41 1 0.2452 -2.8028 -6.7568 42 1 0.9828 -3.7470 -8.0735 43 1 1.0100 -4.3715 -6.4071 44 1 3.4254 -1.0035 -7.4687 45 1 2.3927 -1.7797 -8.6934 46 1 1.6558 -0.8359 -7.3768 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988874171.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:51:00 Heat of formation + Delta-G solvation = 114.627241 kcal Electronic energy + Delta-G solvation = -27994.107376 eV Core-core repulsion = 24150.861806 eV Total energy + Delta-G solvation = -3843.245570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.39413 -39.93648 -37.91999 -37.32213 -34.18136 -33.51069 -32.79499 -31.41453 -31.20161 -28.41023 -28.03872 -28.02144 -25.61885 -25.18590 -24.44438 -23.71542 -21.77428 -20.88791 -20.20620 -19.31040 -17.44852 -17.35977 -17.19163 -16.55407 -16.27516 -15.34530 -14.74943 -14.65317 -14.44217 -14.12001 -13.87747 -13.63908 -13.38539 -13.31295 -13.16271 -12.95794 -12.79671 -12.63908 -12.30470 -12.22420 -12.11065 -11.95265 -11.89785 -11.76332 -11.53252 -11.22191 -11.10465 -10.97920 -10.89373 -10.66088 -10.65276 -10.35926 -10.26713 -10.03805 -9.80146 -9.69149 -8.94262 -8.37009 -7.03687 -5.78838 -3.09223 1.03572 1.58617 1.60302 2.84386 3.24582 3.45249 3.49794 3.50494 3.78983 4.03829 4.07088 4.17543 4.51949 4.59550 4.93098 4.96105 4.99218 5.03408 5.13103 5.13982 5.18606 5.21560 5.24029 5.32959 5.48954 5.50570 5.58345 5.61704 5.63002 5.75364 5.80288 5.85522 5.94041 6.07254 6.15323 6.19169 6.34987 6.42059 6.49538 6.65882 6.67942 6.95000 7.63110 7.70518 8.07701 8.33649 8.38657 9.50574 10.03992 10.38951 11.43229 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.011343 B = 0.003774 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.816070 B = 7418.145853 C = 9422.390670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.079 0.921 4 C -0.138 4.138 5 C 0.171 3.829 6 H 0.069 0.931 7 N -0.710 5.710 8 C -0.246 4.246 9 H 0.073 0.927 10 C -0.008 4.008 11 N -0.931 5.931 12 Si 0.908 3.092 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.284 1.284 16 C 0.077 3.923 17 N -0.587 5.587 18 C 0.627 3.373 19 O -0.523 6.523 20 C 0.130 3.870 21 N -0.239 5.239 22 N -0.058 5.058 23 N -0.130 5.130 24 C 0.177 3.823 25 C -0.154 4.154 26 C -0.160 4.160 27 C -0.159 4.159 28 N -0.251 5.251 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.387 0.613 35 H 0.256 0.744 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.090 0.910 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.328 5.814 -19.667 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.097 0.903 4 C -0.177 4.177 5 C 0.059 3.941 6 H 0.087 0.913 7 N -0.350 5.350 8 C -0.377 4.377 9 H 0.091 0.909 10 C -0.205 4.205 11 N -0.578 5.578 12 Si 0.738 3.262 13 H -0.212 1.212 14 H -0.217 1.217 15 H -0.211 1.211 16 C -0.049 4.049 17 N -0.320 5.320 18 C 0.409 3.591 19 O -0.398 6.398 20 C -0.153 4.153 21 N -0.113 5.113 22 N -0.051 5.051 23 N -0.044 5.044 24 C 0.096 3.904 25 C -0.212 4.212 26 C -0.219 4.219 27 C -0.218 4.218 28 N -0.105 5.105 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.221 0.779 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.109 0.891 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.109 0.891 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.277 5.728 -20.099 22.130 hybrid contribution 0.617 -0.369 0.325 0.789 sum -6.660 5.359 -19.775 21.543 Atomic orbital electron populations 1.22159 0.94067 1.02858 1.02952 1.21981 0.94927 0.95419 0.83940 0.90291 1.23213 0.98111 1.00379 0.95983 1.21219 0.93094 0.91195 0.88617 0.91266 1.42353 1.05271 1.22273 1.65104 1.19222 0.83310 1.04770 1.30391 0.90945 1.24748 0.97634 0.97336 1.00746 1.69655 1.32312 1.13548 1.42320 0.86266 0.84990 0.77224 0.77690 1.21194 1.21724 1.21102 1.23523 0.84613 0.97221 0.99517 1.48371 1.28780 1.47297 1.07561 1.15704 0.82960 0.80536 0.79879 1.90754 1.24348 1.43239 1.81413 1.25299 0.94844 1.02398 0.92789 1.76441 1.13902 1.08710 1.12227 1.78971 1.12818 1.18061 0.95235 1.50741 1.14122 1.27128 1.12437 1.21462 0.99761 0.97700 0.71434 1.22108 0.96643 0.99318 1.03100 1.22255 0.94436 1.01296 1.03863 1.22248 1.04219 0.95557 0.99749 1.74922 1.17785 1.11712 1.06059 0.91900 0.90101 0.92590 0.90371 0.89843 0.77869 0.93374 0.91457 0.89944 0.90371 0.89213 0.90428 0.90286 0.89082 0.91228 0.91290 0.89082 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 8.59 37.16 0.32 -1.95 16 2 C 0.14 2.09 3.77 -66.42 -0.25 1.84 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 4 C -0.14 -2.18 6.13 -24.58 -0.15 -2.33 16 5 C 0.17 3.28 3.62 -66.10 -0.24 3.04 16 6 H 0.07 1.31 8.09 -51.92 -0.42 0.89 16 7 N -0.71 -17.20 5.15 -51.65 -0.27 -17.46 16 8 C -0.25 -6.64 9.96 -15.06 -0.15 -6.79 16 9 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 10 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 11 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 12 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 C 0.08 1.43 5.29 -3.06 -0.02 1.42 16 17 N -0.59 -10.04 3.24 -164.09 -0.53 -10.57 16 18 C 0.63 11.28 7.65 -12.25 -0.09 11.19 16 19 O -0.52 -9.96 14.82 5.34 0.08 -9.88 16 20 C 0.13 2.29 7.97 -156.25 -1.24 1.05 16 21 N -0.24 -4.29 10.09 32.10 0.32 -3.97 16 22 N -0.06 -0.91 12.21 60.35 0.74 -0.18 16 23 N -0.13 -1.73 3.72 0.52 0.00 -1.73 16 24 C 0.18 1.48 1.30 -131.82 -0.17 1.31 16 25 C -0.15 -1.02 7.90 37.16 0.29 -0.73 16 26 C -0.16 -1.09 8.66 37.15 0.32 -0.77 16 27 C -0.16 -1.04 8.66 37.16 0.32 -0.72 16 28 N -0.25 -3.94 11.85 32.11 0.38 -3.56 16 29 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.08 1.23 6.09 -51.93 -0.32 0.91 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.30 7.93 -51.92 -0.41 0.89 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.39 10.00 7.76 -40.82 -0.32 9.68 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.07 1.27 7.77 -51.93 -0.40 0.87 16 37 H 0.08 1.74 7.54 -51.93 -0.39 1.35 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 377.16 15.07 5.68 5.68 Total: -1.00 -32.71 377.16 -6.35 -39.06 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.30 Total: 6.21 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -1.16 Total: 6.21 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: 1.37 Total: -64.39 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.08 Total: -9.88 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.71 -6.35 -39.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988874171.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.682 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds