Wall clock time and date at job start Sat Apr 11 2020 00:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.40849 * 2 1 4 4 C 1.54904 * 110.36792 * 122.29296 * 2 1 3 5 5 C 1.55160 * 101.58219 * 155.84687 * 4 2 1 6 6 H 1.09008 * 110.71474 * 83.04057 * 5 4 2 7 7 N 1.46499 * 110.72231 * 206.13707 * 5 4 2 8 8 C 1.36939 * 119.99933 * 205.27701 * 7 5 4 9 9 H 1.08001 * 119.99700 * 359.72658 * 8 7 5 10 10 C 1.38810 * 120.00095 * 179.71972 * 8 7 5 11 11 N 1.31624 * 119.99740 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00044 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47173 * 60.00435 * 12 10 8 14 14 H 1.48497 * 109.47172 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47132 * 300.00314 * 12 10 8 16 16 C 1.54322 * 102.94285 * 324.50166 * 5 4 2 17 17 N 1.47026 * 107.27058 * 22.19125 * 16 5 4 18 18 C 1.34778 * 125.64928 * 181.02541 * 17 16 5 19 19 O 1.21531 * 120.00002 * 180.02562 * 18 17 16 20 20 C 1.48008 * 119.99926 * 0.03913 * 18 17 16 21 21 N 1.34191 * 126.69426 * 0.02624 * 20 18 17 22 22 N 1.28983 * 107.24573 * 180.02562 * 21 20 18 23 23 N 1.28720 * 108.99119 * 359.97438 * 22 21 20 24 24 C 1.46496 * 125.31932 * 179.97438 * 23 22 21 25 25 C 1.53005 * 109.47222 * 359.97438 * 24 23 22 26 26 C 1.52993 * 109.47253 * 119.97628 * 24 23 22 27 27 C 1.53001 * 109.47072 * 239.97897 * 24 23 22 28 28 N 1.28871 * 109.35689 * 359.73094 * 23 22 21 29 29 H 1.09008 * 109.47298 * 297.70495 * 1 2 3 30 30 H 1.08998 * 109.47694 * 57.70472 * 1 2 3 31 31 H 1.09004 * 109.47437 * 177.70580 * 1 2 3 32 32 H 1.09007 * 111.00597 * 37.77780 * 4 2 1 33 33 H 1.09003 * 111.00873 * 273.92219 * 4 2 1 34 34 H 0.97001 * 119.99790 * 24.99674 * 7 5 4 35 35 H 0.96998 * 119.99409 * 179.97438 * 11 10 8 36 36 H 1.09002 * 109.88400 * 141.60596 * 16 5 4 37 37 H 1.08995 * 109.88111 * 262.77868 * 16 5 4 38 38 H 1.09001 * 109.46872 * 60.00147 * 25 24 23 39 39 H 1.09003 * 109.47118 * 179.97438 * 25 24 23 40 40 H 1.08995 * 109.47371 * 300.00132 * 25 24 23 41 41 H 1.09007 * 109.47428 * 60.00068 * 26 24 23 42 42 H 1.09003 * 109.47558 * 180.02562 * 26 24 23 43 43 H 1.09001 * 109.47277 * 300.00120 * 26 24 23 44 44 H 1.08995 * 109.47159 * 60.00090 * 27 24 23 45 45 H 1.09003 * 109.46871 * 180.02562 * 27 24 23 46 46 H 1.08997 * 109.47109 * 299.99908 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9101 1.0216 0.0000 4 6 2.0691 -0.7758 1.2276 5 6 3.4778 -1.1997 0.7341 6 1 4.1952 -0.3911 0.8750 7 7 3.9250 -2.4128 1.4229 8 6 5.2632 -2.6734 1.5513 9 1 5.9888 -1.9868 1.1409 10 6 5.6871 -3.8199 2.2091 11 7 4.8027 -4.6569 2.7089 12 14 7.5125 -4.1757 2.3836 13 1 8.1627 -3.0710 3.1334 14 1 7.7000 -5.4516 3.1199 15 1 8.1261 -4.2877 1.0359 16 6 3.2494 -1.4768 -0.7668 17 7 2.0431 -0.7383 -1.1683 18 6 1.4971 -0.7362 -2.4006 19 8 0.4944 -0.0856 -2.6198 20 6 2.1187 -1.5266 -3.4867 21 7 3.2193 -2.2888 -3.3949 22 7 3.4255 -2.8044 -4.5590 23 7 2.5073 -2.3995 -5.3652 24 6 2.3990 -2.7675 -6.7790 25 6 3.5472 -3.7080 -7.1507 26 6 1.0632 -3.4728 -7.0216 27 6 2.4737 -1.5059 -7.6415 28 7 1.6954 -1.6239 -4.7328 29 1 -0.3634 0.4778 0.9099 30 1 -0.3634 0.5490 -0.8686 31 1 -0.3634 -1.0269 -0.0411 32 1 1.4511 -1.6481 1.4408 33 1 2.1399 -0.1263 2.1001 34 1 3.2732 -3.0294 1.7916 35 1 5.0989 -5.4582 3.1682 36 1 4.1065 -1.1279 -1.3428 37 1 3.1013 -2.5445 -0.9282 38 1 3.4941 -4.6067 -6.5362 39 1 3.4664 -3.9821 -8.2026 40 1 4.4989 -3.2055 -6.9779 41 1 0.2452 -2.8028 -6.7568 42 1 0.9828 -3.7470 -8.0735 43 1 1.0100 -4.3715 -6.4071 44 1 3.4254 -1.0035 -7.4687 45 1 2.3927 -1.7797 -8.6934 46 1 1.6558 -0.8359 -7.3768 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988874171.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:50:59 Heat of formation + Delta-G solvation = 92.367767 kcal Electronic energy + Delta-G solvation = -27995.072619 eV Core-core repulsion = 24150.861806 eV Total energy + Delta-G solvation = -3844.210813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.60082 -41.33455 -38.91162 -38.59018 -36.00030 -34.70483 -34.00852 -33.24007 -32.46917 -30.12351 -28.64983 -28.55553 -26.93822 -26.47491 -25.73505 -25.50104 -23.13703 -21.92980 -21.72816 -20.56863 -19.23063 -18.59633 -18.37677 -17.74751 -17.61584 -16.90398 -16.32072 -15.66975 -15.40435 -15.28343 -15.26449 -15.13715 -14.90890 -14.54751 -14.28905 -14.03476 -13.55727 -13.49561 -13.34988 -13.25711 -13.22853 -13.10394 -12.90740 -12.87713 -12.78261 -12.66031 -12.45320 -12.28317 -12.17874 -12.11153 -12.10942 -12.06185 -11.70580 -11.58400 -11.46786 -11.17521 -10.90499 -9.79388 -9.04597 -7.91806 -5.21474 -0.18740 0.26509 0.64634 1.50667 1.53568 1.56655 1.59393 1.85409 2.56981 2.68922 2.91376 3.38516 3.46717 3.47882 3.59564 3.70479 3.83091 3.88770 4.00073 4.21089 4.26741 4.31748 4.39750 4.49050 4.50372 4.52113 4.57870 4.58906 4.69668 4.70248 4.75406 4.84493 4.94026 4.99208 5.08667 5.12486 5.16580 5.17209 5.19585 5.23344 5.34136 5.50275 5.57125 6.19506 6.29523 6.71414 7.06015 7.36593 8.07790 8.31791 9.31066 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.011343 B = 0.003774 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.816070 B = 7418.145853 C = 9422.390670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 H 0.102 0.898 4 C -0.124 4.124 5 C 0.165 3.835 6 H 0.078 0.922 7 N -0.722 5.722 8 C -0.242 4.242 9 H 0.080 0.920 10 C -0.070 4.070 11 N -0.968 5.968 12 Si 0.969 3.031 13 H -0.275 1.275 14 H -0.298 1.298 15 H -0.281 1.281 16 C 0.096 3.904 17 N -0.586 5.586 18 C 0.626 3.374 19 O -0.536 6.536 20 C 0.111 3.889 21 N -0.268 5.268 22 N -0.067 5.067 23 N -0.109 5.109 24 C 0.157 3.843 25 C -0.151 4.151 26 C -0.156 4.156 27 C -0.155 4.155 28 N -0.253 5.253 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.376 0.624 35 H 0.250 0.750 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.130 0.870 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.132 0.868 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.132 0.868 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.284 6.859 -21.454 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.037 3.963 3 H 0.120 0.880 4 C -0.163 4.163 5 C 0.054 3.946 6 H 0.096 0.904 7 N -0.360 5.360 8 C -0.374 4.374 9 H 0.098 0.902 10 C -0.262 4.262 11 N -0.618 5.618 12 Si 0.798 3.202 13 H -0.201 1.201 14 H -0.224 1.224 15 H -0.207 1.207 16 C -0.030 4.030 17 N -0.318 5.318 18 C 0.409 3.591 19 O -0.412 6.412 20 C -0.173 4.173 21 N -0.142 5.142 22 N -0.059 5.059 23 N -0.026 5.026 24 C 0.079 3.921 25 C -0.209 4.209 26 C -0.215 4.215 27 C -0.213 4.213 28 N -0.108 5.108 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.208 0.792 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.149 0.851 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.150 0.850 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.150 0.850 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.229 6.820 -21.909 24.058 hybrid contribution 0.538 -0.672 0.685 1.100 sum -6.691 6.148 -21.224 23.088 Atomic orbital electron populations 1.22083 0.93044 1.02124 1.03930 1.22203 0.95729 0.95972 0.82390 0.88045 1.23122 0.95415 1.00533 0.97213 1.21424 0.95249 0.89521 0.88361 0.90370 1.42482 1.04241 1.23646 1.65658 1.19617 0.84720 1.04369 1.28703 0.90231 1.25506 1.01464 0.97685 1.01579 1.69809 1.33988 1.14035 1.43980 0.85282 0.80534 0.76815 0.77561 1.20064 1.22416 1.20732 1.23064 0.85179 0.95698 0.99036 1.48380 1.28246 1.47175 1.08040 1.15780 0.82785 0.80394 0.80128 1.90739 1.24808 1.43904 1.81709 1.25292 0.95343 1.03209 0.93440 1.76391 1.14658 1.09613 1.13521 1.78881 1.13573 1.18327 0.95127 1.51398 1.12478 1.25090 1.13606 1.22258 1.01480 0.99331 0.69061 1.22181 0.95335 0.98029 1.05325 1.22309 0.92787 1.00136 1.06238 1.22297 1.03233 0.94214 1.01552 1.74882 1.18195 1.12147 1.05549 0.88963 0.91189 0.93965 0.91348 0.87414 0.79189 0.94076 0.91901 0.92789 0.91694 0.85122 0.91358 0.91557 0.84961 0.92424 0.92081 0.85012 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 8.59 71.98 0.62 -3.45 16 2 C 0.14 3.92 3.77 45.47 0.17 4.09 16 3 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 4 C -0.12 -3.76 6.13 31.99 0.20 -3.56 16 5 C 0.17 6.25 3.62 46.18 0.17 6.42 16 6 H 0.08 2.85 8.09 -2.38 -0.02 2.83 16 7 N -0.72 -35.27 5.15 -317.32 -1.63 -36.90 16 8 C -0.24 -13.12 9.96 84.03 0.84 -12.28 16 9 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 10 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 11 N -0.97 -58.68 13.06 21.65 0.28 -58.40 16 12 Si 0.97 45.81 29.55 68.60 2.03 47.83 16 13 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 14 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 C 0.10 3.64 5.29 86.73 0.46 4.10 16 17 N -0.59 -19.96 3.24 -791.36 -2.57 -22.53 16 18 C 0.63 22.74 7.65 86.83 0.66 23.40 16 19 O -0.54 -20.38 14.82 -3.81 -0.06 -20.44 16 20 C 0.11 3.97 7.97 137.15 1.09 5.06 16 21 N -0.27 -9.95 10.09 -52.36 -0.53 -10.48 16 22 N -0.07 -2.14 12.21 37.02 0.45 -1.69 16 23 N -0.11 -2.88 3.72 -152.27 -0.57 -3.45 16 24 C 0.16 2.37 1.30 3.60 0.00 2.37 16 25 C -0.15 -1.70 7.90 71.98 0.57 -1.13 16 26 C -0.16 -1.83 8.66 71.98 0.62 -1.20 16 27 C -0.15 -1.68 8.66 71.98 0.62 -1.05 16 28 N -0.25 -8.00 11.85 -52.32 -0.62 -8.62 16 29 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.07 2.04 6.09 -2.39 -0.01 2.02 16 31 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.07 2.23 7.93 -2.38 -0.02 2.22 16 33 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.38 19.86 7.76 -92.71 -0.72 19.14 16 35 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.06 2.42 7.77 -2.39 -0.02 2.40 16 37 H 0.05 2.37 7.54 -2.39 -0.02 2.35 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 39 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 42 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -72.70 377.16 3.55 -69.15 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.27 Total: 26.25 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: 6.49 Total: 19.28 kcal Atomic # 7 Polarization: -136.89 SS G_CDS: -5.18 Total: -142.07 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.06 Total: -20.44 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -72.70 3.55 -69.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988874171.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.521 kcal (2) G-P(sol) polarization free energy of solvation -72.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds