Wall clock time and date at job start Sat Apr 11 2020 00:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47427 * 2 1 4 4 C 1.34777 * 119.99732 * 272.63549 * 3 2 1 5 5 O 1.21530 * 119.99642 * 185.24880 * 4 3 2 6 6 C 1.48002 * 120.00241 * 5.24794 * 4 3 2 7 7 N 1.34190 * 126.69791 * 5.38199 * 6 4 3 8 8 N 1.28981 * 107.25406 * 179.83492 * 7 6 4 9 9 N 1.28729 * 108.98676 * 0.43625 * 8 7 6 10 10 C 1.46488 * 125.31949 * 179.75558 * 9 8 7 11 11 N 1.28869 * 109.35602 * 359.72331 * 9 8 7 12 12 C 1.46503 * 119.99885 * 92.63053 * 3 2 1 13 13 H 1.08994 * 109.50955 * 0.05609 * 12 3 2 14 14 C 1.52565 * 109.48609 * 240.00014 * 12 3 2 15 15 C 1.47099 * 114.32361 * 155.02453 * 14 12 3 16 16 C 1.54869 * 110.31833 * 62.79992 * 15 14 12 17 17 N 1.44576 * 109.60276 * 288.73137 * 16 15 14 18 18 C 1.36933 * 118.64306 * 270.73238 * 17 16 15 19 19 H 1.08000 * 120.00301 * 27.05338 * 18 17 16 20 20 C 1.38820 * 119.99701 * 207.05604 * 18 17 16 21 21 N 1.31613 * 120.00033 * 17.25389 * 20 18 17 22 22 Si 1.86801 * 119.99639 * 197.25603 * 20 18 17 23 23 H 1.48507 * 109.47219 * 94.98139 * 22 20 18 24 24 H 1.48505 * 109.46898 * 214.97521 * 22 20 18 25 25 H 1.48498 * 109.47365 * 334.97793 * 22 20 18 26 26 C 1.47600 * 122.71155 * 90.72949 * 17 16 15 27 27 C 1.50880 * 109.48766 * 120.11498 * 12 3 2 28 28 H 1.08994 * 109.47119 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46614 * 300.00184 * 1 2 3 30 30 H 1.08995 * 109.47150 * 59.99944 * 1 2 3 31 31 H 1.08994 * 109.47056 * 239.99451 * 2 1 3 32 32 H 1.09001 * 109.46821 * 119.99739 * 2 1 3 33 33 H 1.09004 * 109.47569 * 269.96054 * 10 9 8 34 34 H 1.08997 * 109.47595 * 29.96497 * 10 9 8 35 35 H 1.09007 * 109.47193 * 149.95993 * 10 9 8 36 36 H 1.08997 * 108.51905 * 33.77498 * 14 12 3 37 37 H 1.09003 * 108.39329 * 276.18523 * 14 12 3 38 38 H 1.08997 * 109.33061 * 302.53985 * 15 14 12 39 39 H 1.09002 * 109.19123 * 182.97067 * 15 14 12 40 40 H 1.08994 * 109.44868 * 48.77749 * 16 15 14 41 41 H 1.09008 * 109.44498 * 168.69168 * 16 15 14 42 42 H 0.96997 * 119.99928 * 180.02562 * 21 20 18 43 43 H 1.09007 * 108.94909 * 197.18486 * 26 17 16 44 44 H 1.09002 * 108.88091 * 78.50569 * 26 17 16 45 45 H 1.09000 * 109.36695 * 332.04440 * 27 12 3 46 46 H 1.09002 * 109.36490 * 91.65590 * 27 12 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1925 2.0344 -1.1660 5 8 2.6870 3.1445 -1.1726 6 6 1.7815 1.3997 -2.4383 7 7 1.1355 0.2321 -2.5800 8 7 0.9635 0.0410 -3.8440 9 7 1.4790 1.0275 -4.4907 10 6 1.4894 1.1716 -5.9484 11 7 1.9838 1.8688 -3.6551 12 6 2.3176 2.0524 1.2674 13 1 2.1184 1.3721 2.0954 14 6 1.4404 3.2930 1.4057 15 6 1.2050 3.7168 2.7945 16 6 2.5410 4.1147 3.4692 17 7 3.3348 2.9304 3.7091 18 6 3.1745 2.2616 4.8932 19 1 2.2329 2.3135 5.4196 20 6 4.2224 1.5168 5.4170 21 7 5.4497 1.7125 4.9840 22 14 3.8903 0.2368 6.7364 23 1 3.7268 -1.0964 6.1028 24 1 5.0316 0.1969 7.6857 25 1 2.6487 0.5920 7.4695 26 6 4.3107 2.4124 2.7304 27 6 3.7697 2.4614 1.2900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.3905 0.7106 -6.3528 34 1 0.6109 0.6817 -6.3683 35 1 1.4744 2.2299 -6.2090 36 1 0.4771 3.0898 0.9380 37 1 1.9180 4.1133 0.8698 38 1 0.7506 2.8965 3.3500 39 1 0.5300 4.5727 2.7984 40 1 3.0896 4.7931 2.8158 41 1 2.3350 4.6118 4.4172 42 1 6.1818 1.1918 5.3497 43 1 4.5514 1.3797 2.9831 44 1 5.2195 3.0115 2.7876 45 1 4.3466 1.7808 0.6638 46 1 3.8656 3.4755 0.9021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998089440.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:51:06 Heat of formation + Delta-G solvation = 118.845839 kcal Electronic energy + Delta-G solvation = -28932.646532 eV Core-core repulsion = 25089.583894 eV Total energy + Delta-G solvation = -3843.062638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.53868 -41.52927 -39.05595 -37.21764 -36.24976 -35.06876 -34.30603 -33.21326 -32.56530 -30.87167 -29.79549 -27.89215 -26.70419 -25.33490 -25.03426 -24.39676 -23.89735 -21.98236 -21.22323 -20.75030 -18.80634 -18.60402 -18.43314 -17.88946 -17.33988 -16.87357 -16.24956 -16.01377 -15.81916 -15.46735 -15.44613 -14.91575 -14.55718 -14.49024 -14.34166 -14.09129 -13.95722 -13.80758 -13.49280 -13.18410 -13.11234 -13.01228 -12.76941 -12.69880 -12.48989 -12.39945 -12.19149 -12.04526 -11.98715 -11.96822 -11.75517 -11.58561 -11.40389 -11.31412 -11.20944 -11.08205 -10.39491 -9.77988 -8.61956 -7.80634 -5.27226 -0.15534 0.28272 0.83295 1.50630 1.52284 1.61120 1.66614 1.89619 2.56560 2.69434 3.02815 3.32439 3.65956 3.73923 3.94351 4.03960 4.06674 4.09390 4.23607 4.37343 4.39751 4.48208 4.49283 4.50431 4.59082 4.62914 4.72252 4.78060 4.91826 4.96286 5.00127 5.06657 5.09706 5.14788 5.22042 5.23675 5.33575 5.41785 5.47992 5.57804 5.63713 5.72014 5.77486 6.23091 6.45913 6.80161 7.06506 7.22615 7.97854 8.40252 9.25145 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.021301 B = 0.003447 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.184032 B = 8120.994210 C = 8453.177788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.098 3.902 3 N -0.582 5.582 4 C 0.607 3.393 5 O -0.536 6.536 6 C 0.118 3.882 7 N -0.253 5.253 8 N -0.064 5.064 9 N -0.117 5.117 10 C 0.073 3.927 11 N -0.265 5.265 12 C 0.175 3.825 13 H 0.095 0.905 14 C -0.104 4.104 15 C -0.126 4.126 16 C 0.151 3.849 17 N -0.603 5.603 18 C -0.260 4.260 19 H 0.070 0.930 20 C -0.048 4.048 21 N -0.936 5.936 22 Si 0.962 3.038 23 H -0.285 1.285 24 H -0.300 1.300 25 H -0.267 1.267 26 C 0.199 3.801 27 C -0.127 4.127 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.144 0.856 35 H 0.129 0.871 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.032 0.968 41 H 0.042 0.958 42 H 0.248 0.752 43 H 0.044 0.956 44 H -0.007 1.007 45 H 0.053 0.947 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.746 -4.115 -21.834 25.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.024 4.024 3 N -0.314 5.314 4 C 0.389 3.611 5 O -0.410 6.410 6 C -0.165 4.165 7 N -0.127 5.127 8 N -0.057 5.057 9 N -0.032 5.032 10 C -0.063 4.063 11 N -0.121 5.121 12 C 0.073 3.927 13 H 0.113 0.887 14 C -0.142 4.142 15 C -0.166 4.166 16 C 0.024 3.976 17 N -0.325 5.325 18 C -0.390 4.390 19 H 0.088 0.912 20 C -0.243 4.243 21 N -0.582 5.582 22 Si 0.790 3.210 23 H -0.212 1.212 24 H -0.228 1.228 25 H -0.192 1.192 26 C 0.073 3.927 27 C -0.167 4.167 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.147 0.853 34 H 0.162 0.838 35 H 0.147 0.853 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.011 0.989 45 H 0.072 0.928 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.589 -4.000 -22.229 25.385 hybrid contribution 0.707 -0.211 1.005 1.247 sum -10.882 -4.211 -21.224 24.220 Atomic orbital electron populations 1.21984 0.94122 1.03285 1.01135 1.22031 0.96201 0.80053 1.04118 1.48231 1.63415 1.15242 1.04504 1.16424 0.79005 0.84411 0.81228 1.90810 1.44035 1.20056 1.86125 1.25087 1.03783 0.93580 0.94069 1.76308 1.15294 1.13717 1.07398 1.78864 1.15385 1.12257 0.99241 1.50784 1.30593 1.09466 1.12347 1.23236 1.09004 1.08640 0.65467 1.75060 1.18243 1.19086 0.99698 1.20462 0.94296 0.95066 0.82843 0.88747 1.20573 0.98680 0.96964 0.97986 1.21254 0.98936 1.01229 0.95221 1.20871 0.91194 0.88032 0.97500 1.43875 1.45607 1.27505 1.15555 1.19516 0.95942 1.24403 0.99138 0.91231 1.25760 0.94604 1.03304 1.00626 1.70247 0.98837 1.42102 1.47054 0.85336 0.77018 0.79726 0.78890 1.21192 1.22759 1.19166 1.20621 0.89311 0.97498 0.85279 1.22166 0.95750 1.00955 0.97800 0.89595 0.93117 0.93229 0.88715 0.89518 0.85338 0.83793 0.85269 0.92457 0.92870 0.92554 0.90426 0.95006 0.93941 0.94336 0.93728 0.98914 0.92811 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.69 71.98 0.70 -2.64 16 2 C 0.10 2.55 5.65 86.38 0.49 3.04 16 3 N -0.58 -18.61 2.26 -805.71 -1.82 -20.43 16 4 C 0.61 20.65 7.07 86.83 0.61 21.26 16 5 O -0.54 -21.35 14.32 -3.81 -0.05 -21.40 16 6 C 0.12 3.46 7.62 137.15 1.05 4.51 16 7 N -0.25 -6.47 7.54 -52.37 -0.39 -6.87 16 8 N -0.06 -1.37 13.23 37.02 0.49 -0.88 16 9 N -0.12 -2.08 4.39 -206.60 -0.91 -2.99 16 10 C 0.07 0.26 11.62 127.77 1.49 1.75 16 11 N -0.27 -6.92 12.17 -52.32 -0.64 -7.55 16 12 C 0.18 6.39 2.17 44.16 0.10 6.48 16 13 H 0.09 3.71 7.10 -2.39 -0.02 3.69 16 14 C -0.10 -3.60 4.01 28.62 0.11 -3.49 16 15 C -0.13 -4.38 5.74 29.40 0.17 -4.22 16 16 C 0.15 6.36 5.65 87.38 0.49 6.85 16 17 N -0.60 -29.96 2.27 -698.36 -1.58 -31.55 16 18 C -0.26 -13.92 9.42 84.04 0.79 -13.12 16 19 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 20 C -0.05 -2.63 4.82 84.86 0.41 -2.22 16 21 N -0.94 -55.50 11.16 21.65 0.24 -55.26 16 22 Si 0.96 44.41 29.59 68.60 2.03 46.44 16 23 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 C 0.20 9.90 4.67 86.49 0.40 10.30 16 27 C -0.13 -5.29 4.22 30.22 0.13 -5.16 16 28 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.05 1.20 6.62 -2.39 -0.02 1.18 16 31 H 0.09 2.41 5.69 -2.39 -0.01 2.39 16 32 H 0.09 2.22 7.86 -2.39 -0.02 2.20 16 33 H 0.13 -0.04 8.14 -2.38 -0.02 -0.06 16 34 H 0.14 -0.27 8.14 -2.39 -0.02 -0.28 16 35 H 0.13 0.13 8.14 -2.38 -0.02 0.11 16 36 H 0.06 1.83 8.04 -2.39 -0.02 1.82 16 37 H 0.05 2.00 6.40 -2.39 -0.02 1.99 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.03 1.34 8.06 -2.39 -0.02 1.32 16 41 H 0.04 1.80 7.99 -2.38 -0.02 1.78 16 42 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 43 H 0.04 2.44 6.42 -2.38 -0.02 2.42 16 44 H -0.01 -0.40 8.03 -2.39 -0.02 -0.42 16 45 H 0.05 2.21 7.97 -2.39 -0.02 2.19 16 46 H 0.05 2.37 6.60 -2.39 -0.02 2.36 16 Total: -1.00 -72.26 360.59 5.28 -66.98 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.98 Total: 10.16 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: 6.94 Total: 23.35 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -4.61 Total: -125.53 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.05 Total: -21.40 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -72.26 5.28 -66.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998089440.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.821 kcal (2) G-P(sol) polarization free energy of solvation -72.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds