Wall clock time and date at job start Sat Apr 11 2020 00:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47067 * 2 1 4 4 C 1.53000 * 109.47420 * 240.00295 * 2 1 3 5 5 N 1.46499 * 109.47199 * 120.00029 * 2 1 3 6 6 N 1.28719 * 125.32089 * 359.97438 * 5 2 1 7 7 N 1.28979 * 108.99389 * 180.02562 * 6 5 2 8 8 C 1.34191 * 107.24995 * 0.02562 * 7 6 5 9 9 C 1.47997 * 126.70090 * 179.97438 * 8 7 6 10 10 O 1.21539 * 120.00245 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00014 * 0.02596 * 9 8 7 12 12 C 1.46504 * 120.00266 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.52032 * 325.08346 * 12 11 9 14 14 C 1.53037 * 109.50165 * 204.99932 * 12 11 9 15 15 C 1.53036 * 109.52971 * 178.68899 * 14 12 11 16 16 C 1.53173 * 109.32579 * 61.37355 * 15 14 12 17 17 N 1.46921 * 108.76821 * 305.35560 * 16 15 14 18 18 C 1.36932 * 120.63360 * 233.63500 * 17 16 15 19 19 H 1.08001 * 120.00859 * 151.80725 * 18 17 16 20 20 C 1.38814 * 119.99659 * 331.80042 * 18 17 16 21 21 N 1.31627 * 119.99987 * 343.09709 * 20 18 17 22 22 Si 1.86799 * 119.99883 * 163.09101 * 20 18 17 23 23 H 1.48505 * 109.47234 * 60.00768 * 22 20 18 24 24 H 1.48508 * 109.47069 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47489 * 299.99968 * 22 20 18 26 26 C 1.46931 * 118.73776 * 53.60610 * 17 16 15 27 27 N 1.28868 * 125.31982 * 180.28928 * 5 2 1 28 28 H 1.09000 * 109.47209 * 299.99923 * 1 2 3 29 29 H 1.08997 * 109.46835 * 60.00304 * 1 2 3 30 30 H 1.08999 * 109.46739 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47257 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47247 * 300.00078 * 3 2 1 33 33 H 1.09000 * 109.47043 * 59.99975 * 3 2 1 34 34 H 1.09009 * 109.46489 * 299.99876 * 4 2 1 35 35 H 1.08998 * 109.47138 * 59.99263 * 4 2 1 36 36 H 1.08996 * 109.47110 * 180.02562 * 4 2 1 37 37 H 0.97005 * 119.99976 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.46187 * 298.70815 * 14 12 11 39 39 H 1.08997 * 109.45692 * 58.67477 * 14 12 11 40 40 H 1.08999 * 109.50251 * 181.30918 * 15 14 12 41 41 H 1.08998 * 109.50168 * 301.41203 * 15 14 12 42 42 H 1.08994 * 109.59028 * 185.57037 * 16 15 14 43 43 H 1.08997 * 109.58644 * 65.14279 * 16 15 14 44 44 H 0.96996 * 119.99377 * 179.97438 * 21 20 18 45 45 H 1.09003 * 109.58260 * 186.60290 * 26 17 16 46 46 H 1.08999 * 109.58201 * 66.18355 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1962 6 7 1.2762 -1.2161 2.1072 7 7 2.0307 -1.7388 3.0134 8 6 3.3029 -1.5251 2.6438 9 6 4.5189 -1.9460 3.3749 10 8 5.6182 -1.6862 2.9263 11 7 4.4073 -2.6174 4.5382 12 6 5.6110 -3.0346 5.2616 13 1 6.3906 -3.3015 4.5481 14 6 5.2857 -4.2452 6.1394 15 6 6.5502 -4.7017 6.8705 16 6 7.0499 -3.5701 7.7738 17 7 7.2271 -2.3593 6.9607 18 6 8.4201 -1.6871 6.9610 19 1 8.7206 -1.1197 6.0925 20 6 9.2433 -1.7348 8.0777 21 7 8.7587 -2.1291 9.2362 22 14 11.0389 -1.2395 7.9361 23 1 11.1288 0.1723 7.4843 24 1 11.6966 -1.3787 9.2603 25 1 11.7188 -2.1188 6.9514 26 6 6.1001 -1.8838 6.1467 27 7 3.2580 -0.8620 1.5036 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6767 -0.2074 -2.1392 36 1 3.1300 -0.7215 -1.2490 37 1 3.5299 -2.8244 4.8964 38 1 4.5236 -3.9706 6.8688 39 1 4.9142 -5.0574 5.5146 40 1 6.3233 -5.5780 7.4776 41 1 7.3211 -4.9529 6.1419 42 1 8.0030 -3.8530 8.2206 43 1 6.3184 -3.3792 8.5590 44 1 9.3341 -2.1627 10.0163 45 1 6.4267 -1.0540 5.5199 46 1 5.2912 -1.5553 6.7992 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007383786.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:51:23 Heat of formation + Delta-G solvation = 86.202840 kcal Electronic energy + Delta-G solvation = -27493.186596 eV Core-core repulsion = 23648.708451 eV Total energy + Delta-G solvation = -3844.478145 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.61793 -41.09619 -39.06194 -38.58977 -36.10503 -34.72567 -34.29729 -33.49552 -32.34222 -30.50710 -28.59952 -28.54424 -27.26600 -26.51936 -25.61976 -23.90645 -23.62043 -22.13359 -21.57417 -21.11425 -19.09277 -18.72331 -18.56111 -17.73814 -17.33355 -16.79213 -16.30325 -15.88809 -15.49595 -15.33981 -15.27475 -15.13618 -15.07712 -14.79870 -14.22991 -14.11930 -14.00592 -13.48956 -13.42778 -13.29841 -13.22863 -13.03244 -12.85079 -12.73077 -12.65549 -12.60701 -12.37518 -12.17261 -12.12534 -12.11607 -11.98240 -11.85212 -11.64153 -11.48772 -11.37629 -11.33766 -10.63073 -10.28608 -8.69683 -7.90137 -5.36142 -0.18090 0.23539 0.62481 1.45215 1.47583 1.54725 1.63758 1.86461 2.49437 2.76401 2.93483 3.24278 3.47959 3.55397 3.63130 3.73515 3.83282 3.98338 4.08448 4.23429 4.29067 4.40832 4.47345 4.52086 4.52958 4.59214 4.60043 4.72828 4.73011 4.80256 4.90282 4.99843 5.02007 5.06328 5.10610 5.14029 5.17075 5.22412 5.26355 5.34702 5.54002 5.64116 5.77757 6.22781 6.37313 6.85764 7.02298 7.13399 7.81940 8.32395 9.15630 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.022283 B = 0.002618 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.265184 B =10693.235892 C =11450.307726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.159 3.841 3 C -0.159 4.159 4 C -0.157 4.157 5 N -0.109 5.109 6 N -0.055 5.055 7 N -0.264 5.264 8 C 0.116 3.884 9 C 0.614 3.386 10 O -0.546 6.546 11 N -0.681 5.681 12 C 0.142 3.858 13 H 0.070 0.930 14 C -0.106 4.106 15 C -0.128 4.128 16 C 0.170 3.830 17 N -0.606 5.606 18 C -0.269 4.269 19 H 0.055 0.945 20 C -0.043 4.043 21 N -0.929 5.929 22 Si 0.966 3.034 23 H -0.279 1.279 24 H -0.287 1.287 25 H -0.278 1.278 26 C 0.143 3.857 27 N -0.259 5.259 28 H 0.069 0.931 29 H 0.128 0.872 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.130 0.870 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.130 0.870 36 H 0.061 0.939 37 H 0.421 0.579 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.006 0.994 44 H 0.253 0.747 45 H 0.033 0.967 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.883 1.121 -20.660 29.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.080 3.920 3 C -0.217 4.217 4 C -0.216 4.216 5 N -0.026 5.026 6 N -0.048 5.048 7 N -0.138 5.138 8 C -0.167 4.167 9 C 0.395 3.605 10 O -0.420 6.420 11 N -0.333 5.333 12 C 0.037 3.963 13 H 0.088 0.912 14 C -0.144 4.144 15 C -0.167 4.167 16 C 0.045 3.955 17 N -0.329 5.329 18 C -0.400 4.400 19 H 0.072 0.928 20 C -0.239 4.239 21 N -0.574 5.574 22 Si 0.794 3.206 23 H -0.205 1.205 24 H -0.213 1.213 25 H -0.204 1.204 26 C 0.016 3.984 27 N -0.113 5.113 28 H 0.088 0.912 29 H 0.146 0.854 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.149 0.851 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.148 0.852 36 H 0.080 0.920 37 H 0.258 0.742 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.024 0.976 44 H 0.062 0.938 45 H 0.051 0.949 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -20.621 1.378 -20.941 29.422 hybrid contribution 1.368 0.348 0.721 1.585 sum -19.253 1.726 -20.220 27.973 Atomic orbital electron populations 1.22180 0.87666 1.04903 1.05933 1.22240 0.98227 0.93253 0.78243 1.22320 1.02438 0.91266 1.05705 1.22311 1.02443 1.01249 0.95555 1.51334 0.99952 1.32906 1.18406 1.78777 1.21420 1.08955 0.95600 1.76091 0.99575 1.18177 1.19947 1.25062 0.94358 1.03282 0.94027 1.16315 0.84573 0.78547 0.81100 1.90861 1.26883 1.55879 1.68348 1.45643 1.11476 1.55436 1.20723 1.21502 0.85599 0.95954 0.93294 0.91154 1.21640 0.98522 0.95829 0.98363 1.22010 0.96794 0.98763 0.99179 1.20752 0.99004 0.84695 0.91081 1.44207 1.09501 1.27468 1.51759 1.19378 0.95722 1.27530 0.97331 0.92756 1.25742 1.02888 1.01066 0.94245 1.70164 1.35512 1.52660 0.99096 0.85370 0.80378 0.78267 0.76603 1.20505 1.21265 1.20440 1.21219 0.90105 0.94645 0.92457 1.74978 1.04150 1.17042 1.15136 0.91172 0.85407 0.90929 0.92075 0.85135 0.92029 0.91732 0.85181 0.92029 0.74160 0.90412 0.89170 0.89449 0.93053 0.92549 0.97587 0.93826 0.94855 0.95939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 7.90 71.98 0.57 -0.37 16 2 C 0.16 1.84 1.30 3.60 0.00 1.85 16 3 C -0.16 -1.53 8.66 71.98 0.62 -0.90 16 4 C -0.16 -1.37 8.66 71.98 0.62 -0.74 16 5 N -0.11 -2.38 3.72 -152.26 -0.57 -2.95 16 6 N -0.06 -1.34 12.21 37.02 0.45 -0.88 16 7 N -0.26 -7.35 12.26 -52.36 -0.64 -7.99 16 8 C 0.12 3.61 8.14 137.14 1.12 4.73 16 9 C 0.61 21.61 7.80 86.83 0.68 22.29 16 10 O -0.55 -23.55 16.76 -3.84 -0.06 -23.62 16 11 N -0.68 -21.14 5.08 -444.89 -2.26 -23.40 16 12 C 0.14 5.16 2.60 45.07 0.12 5.28 16 13 H 0.07 2.90 7.58 -2.39 -0.02 2.88 16 14 C -0.11 -3.19 5.35 30.62 0.16 -3.03 16 15 C -0.13 -4.58 6.08 30.66 0.19 -4.40 16 16 C 0.17 8.16 5.30 86.36 0.46 8.62 16 17 N -0.61 -31.94 2.99 -699.15 -2.09 -34.03 16 18 C -0.27 -15.78 9.58 84.03 0.81 -14.98 16 19 H 0.05 3.23 7.88 -2.91 -0.02 3.21 16 20 C -0.04 -2.51 4.92 84.86 0.42 -2.09 16 21 N -0.93 -55.64 11.20 21.65 0.24 -55.39 16 22 Si 0.97 46.60 29.59 68.60 2.03 48.63 16 23 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 26 C 0.14 6.49 6.09 86.36 0.53 7.02 16 27 N -0.26 -7.45 11.85 -52.31 -0.62 -8.07 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 29 H 0.13 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.42 10.61 8.35 -92.70 -0.77 9.84 16 38 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.06 3.07 6.06 -2.39 -0.01 3.06 16 43 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 45 H 0.03 1.65 7.93 -2.39 -0.02 1.63 16 46 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -76.50 377.61 2.98 -73.52 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.21 Total: 10.91 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: 6.29 Total: 23.27 kcal Atomic # 7 Polarization: -127.22 SS G_CDS: -5.49 Total: -132.71 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.06 Total: -23.62 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -76.50 2.98 -73.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007383786.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.726 kcal (2) G-P(sol) polarization free energy of solvation -76.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds