Wall clock time and date at job start Sat Apr 11 2020 00:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46961 * 2 1 4 4 C 1.53005 * 109.46633 * 240.00196 * 2 1 3 5 5 N 1.46498 * 109.47245 * 120.00450 * 2 1 3 6 6 N 1.28723 * 125.31735 * 359.97307 * 5 2 1 7 7 N 1.28979 * 108.98621 * 180.02562 * 6 5 2 8 8 C 1.34188 * 107.25352 * 0.02562 * 7 6 5 9 9 C 1.48011 * 126.70140 * 179.97438 * 8 7 6 10 10 O 1.21531 * 119.99815 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99868 * 0.02562 * 9 8 7 12 12 C 1.46497 * 119.99944 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47114 * 180.02562 * 12 11 9 14 14 H 1.08997 * 110.92180 * 57.44684 * 13 12 11 15 15 C 1.55155 * 111.00532 * 181.35298 * 13 12 11 16 16 C 1.54327 * 102.94571 * 153.57522 * 15 13 12 17 17 N 1.47024 * 107.26774 * 337.80617 * 16 15 13 18 18 C 1.36941 * 125.64618 * 179.20447 * 17 16 15 19 19 H 1.08005 * 119.99780 * 179.68989 * 18 17 16 20 20 C 1.38813 * 119.99913 * 359.69358 * 18 17 16 21 21 N 1.31616 * 119.99926 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99719 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47311 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47271 * 120.00121 * 22 20 18 25 25 H 1.48501 * 109.46665 * 239.99715 * 22 20 18 26 26 C 1.47426 * 108.70449 * 358.94057 * 17 16 15 27 27 N 1.28868 * 125.32177 * 180.28443 * 5 2 1 28 28 H 1.09005 * 109.46697 * 299.99856 * 1 2 3 29 29 H 1.09003 * 109.47299 * 59.99291 * 1 2 3 30 30 H 1.08996 * 109.47345 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46672 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47630 * 299.99925 * 3 2 1 33 33 H 1.08993 * 109.46901 * 60.00647 * 3 2 1 34 34 H 1.08996 * 109.47148 * 299.99990 * 4 2 1 35 35 H 1.09003 * 109.46859 * 60.00243 * 4 2 1 36 36 H 1.08998 * 109.47027 * 180.02562 * 4 2 1 37 37 H 0.97000 * 120.00160 * 0.02562 * 11 9 8 38 38 H 1.09002 * 109.46937 * 60.00106 * 12 11 9 39 39 H 1.09002 * 109.47231 * 300.00009 * 12 11 9 40 40 H 1.08999 * 110.71965 * 271.93488 * 15 13 12 41 41 H 1.09000 * 110.72417 * 35.03508 * 15 13 12 42 42 H 1.08995 * 109.88184 * 218.39040 * 16 15 13 43 43 H 1.09002 * 109.88385 * 97.22047 * 16 15 13 44 44 H 0.97001 * 119.99407 * 180.02562 * 21 20 18 45 45 H 1.09002 * 110.36518 * 142.96440 * 26 17 16 46 46 H 1.08995 * 110.36673 * 265.17549 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0184 -0.6907 1.1961 6 7 1.2762 -1.2162 2.1071 7 7 2.0307 -1.7390 3.0132 8 6 3.3029 -1.5252 2.6436 9 6 4.5191 -1.9462 3.3747 10 8 5.6182 -1.6864 2.9260 11 7 4.4075 -2.6177 4.5379 12 6 5.6112 -3.0349 5.2612 13 6 5.2080 -3.7734 6.5391 14 1 4.5774 -4.6323 6.3098 15 6 6.4583 -4.2025 7.3515 16 6 5.9244 -4.2700 8.7979 17 7 4.7238 -3.4237 8.8598 18 6 3.9426 -3.2265 9.9672 19 1 3.0801 -2.5788 9.9112 20 6 4.2594 -3.8590 11.1615 21 7 5.3102 -4.6486 11.2295 22 14 3.1934 -3.5905 12.6718 23 1 2.0811 -2.6661 12.3348 24 1 2.6371 -4.8915 13.1227 25 1 4.0150 -3.0001 13.7589 26 6 4.5037 -2.8175 7.5341 27 7 3.2581 -0.8622 1.5035 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6766 -1.7489 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7217 -1.2492 37 1 3.5301 -2.8254 4.8958 38 1 6.2023 -2.1564 5.5200 39 1 6.2028 -3.6980 4.6301 40 1 6.8131 -5.1802 7.0254 41 1 7.2494 -3.4578 7.2639 42 1 6.6787 -3.8945 9.4893 43 1 5.6663 -5.2985 9.0502 44 1 5.5313 -5.0908 12.0641 45 1 3.4374 -2.7606 7.3153 46 1 4.9524 -1.8251 7.4916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028553587.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:51:34 Heat of formation + Delta-G solvation = 113.416640 kcal Electronic energy + Delta-G solvation = -26911.646216 eV Core-core repulsion = 23068.348151 eV Total energy + Delta-G solvation = -3843.298066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -44.66160 -39.71582 -38.07816 -37.60730 -34.82097 -33.73766 -32.88193 -32.32600 -29.85561 -28.45620 -28.16965 -28.14806 -26.14375 -24.95134 -24.71515 -23.26098 -21.26145 -20.85077 -19.93164 -19.86178 -18.13728 -17.65163 -17.09591 -16.73562 -16.06222 -15.51396 -14.98873 -14.81001 -14.64332 -14.48732 -14.25910 -14.01047 -13.54580 -13.49487 -13.17806 -13.04088 -12.97263 -12.47879 -12.45799 -12.32308 -12.12736 -11.99023 -11.76593 -11.71922 -11.40204 -11.28501 -11.23946 -10.87270 -10.78980 -10.61195 -10.59489 -10.23818 -10.05032 -9.90955 -9.82868 -9.63228 -9.08994 -8.57529 -6.80056 -5.68532 -3.01727 0.79972 1.29019 1.37254 2.72815 3.01238 3.42165 3.47762 3.50208 3.60671 3.87422 3.90237 4.01520 4.35712 4.52195 4.80701 4.82151 4.83121 4.99157 5.00963 5.03654 5.05027 5.11332 5.23908 5.31421 5.40369 5.43520 5.47356 5.55787 5.60137 5.68906 5.83536 5.89372 6.01149 6.05614 6.30484 6.36340 6.53948 6.55008 6.69719 6.93476 7.32922 7.59610 7.65938 7.85850 7.90598 8.05271 8.29010 9.25331 9.85604 10.51469 11.43400 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.021091 B = 0.002322 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.262276 B =12053.547907 C =13050.743105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.176 3.824 3 C -0.161 4.161 4 C -0.160 4.160 5 N -0.126 5.126 6 N -0.055 5.055 7 N -0.253 5.253 8 C 0.128 3.872 9 C 0.614 3.386 10 O -0.514 6.514 11 N -0.698 5.698 12 C 0.133 3.867 13 C -0.119 4.119 14 H 0.083 0.917 15 C -0.134 4.134 16 C 0.177 3.823 17 N -0.606 5.606 18 C -0.226 4.226 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.922 5.922 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.140 3.860 27 N -0.246 5.246 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.413 0.587 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.043 0.957 43 H 0.047 0.953 44 H 0.251 0.749 45 H 0.038 0.962 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.327 8.579 -26.750 29.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.096 3.904 3 C -0.219 4.219 4 C -0.219 4.219 5 N -0.041 5.041 6 N -0.047 5.047 7 N -0.128 5.128 8 C -0.156 4.156 9 C 0.394 3.606 10 O -0.386 6.386 11 N -0.350 5.350 12 C 0.011 3.989 13 C -0.139 4.139 14 H 0.101 0.899 15 C -0.173 4.173 16 C 0.052 3.948 17 N -0.333 5.333 18 C -0.355 4.355 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.570 5.570 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.014 3.986 27 N -0.100 5.100 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.249 0.751 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -7.130 8.771 -26.957 29.231 hybrid contribution -0.517 -0.038 1.138 1.250 sum -7.647 8.733 -25.819 28.308 Atomic orbital electron populations 1.22117 0.89735 1.04804 1.04515 1.21529 0.96667 0.92882 0.79338 1.22266 1.03559 0.91837 1.04263 1.22263 1.03535 1.01140 0.94931 1.50763 1.00951 1.34293 1.18097 1.78900 1.21579 1.08820 0.95434 1.76181 1.00084 1.17395 1.19148 1.25374 0.94636 1.02154 0.93454 1.16100 0.84558 0.79025 0.80961 1.90843 1.25278 1.55201 1.67296 1.45812 1.12023 1.55795 1.21391 1.21564 0.85666 0.99422 0.92293 1.22634 0.99354 0.99062 0.92802 0.89896 1.22863 0.95823 1.00191 0.98402 1.21154 0.88516 0.95802 0.89298 1.44488 1.29414 1.53587 1.05762 1.19114 1.05682 1.23490 0.87174 0.90395 1.24806 0.98280 0.99616 0.97898 1.69975 1.27502 1.34032 1.25505 0.86044 0.79414 0.77299 0.83021 1.20509 1.21776 1.21806 1.21590 0.97130 0.94006 0.85900 1.74973 1.02697 1.17033 1.15249 0.90404 0.89058 0.90440 0.90183 0.88928 0.91199 0.91253 0.88923 0.90202 0.75081 0.90682 0.90974 0.91886 0.92117 0.93884 0.93487 0.93841 0.94386 0.96240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 7.90 37.16 0.29 -0.36 16 2 C 0.18 1.08 1.30 -131.82 -0.17 0.91 16 3 C -0.16 -0.79 8.66 37.16 0.32 -0.47 16 4 C -0.16 -0.75 8.66 37.16 0.32 -0.43 16 5 N -0.13 -1.34 3.72 0.53 0.00 -1.34 16 6 N -0.05 -0.67 12.21 60.35 0.74 0.06 16 7 N -0.25 -3.55 12.26 32.10 0.39 -3.15 16 8 C 0.13 1.84 8.14 -156.24 -1.27 0.57 16 9 C 0.61 9.36 7.84 -12.25 -0.10 9.27 16 10 O -0.51 -9.11 17.10 5.34 0.09 -9.02 16 11 N -0.70 -9.75 5.40 -61.20 -0.33 -10.08 16 12 C 0.13 1.91 5.12 -4.05 -0.02 1.89 16 13 C -0.12 -1.97 3.10 -88.47 -0.27 -2.24 16 14 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 15 C -0.13 -2.41 6.42 -24.90 -0.16 -2.57 16 16 C 0.18 4.27 5.37 -3.06 -0.02 4.26 16 17 N -0.61 -15.50 3.39 -170.07 -0.58 -16.07 16 18 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16 19 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 21 N -0.92 -27.29 10.31 55.49 0.57 -26.72 16 22 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 26 C 0.14 2.84 6.41 -2.53 -0.02 2.82 16 27 N -0.25 -3.25 11.85 32.11 0.38 -2.87 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.41 5.44 8.09 -40.82 -0.33 5.11 16 38 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 42 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 43 H 0.05 1.25 7.38 -51.93 -0.38 0.87 16 44 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 LS Contribution 380.91 15.07 5.74 5.74 Total: -1.00 -34.22 380.91 -6.75 -40.98 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -7.40 Total: -1.59 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -1.34 Total: 6.76 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 1.18 Total: -60.17 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.22 -6.75 -40.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028553587.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.392 kcal (2) G-P(sol) polarization free energy of solvation -34.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds