Wall clock time and date at job start Sat Apr 11 2020 00:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46961 * 2 1 4 4 C 1.53005 * 109.46633 * 240.00196 * 2 1 3 5 5 N 1.46498 * 109.47245 * 120.00450 * 2 1 3 6 6 N 1.28723 * 125.31735 * 359.97307 * 5 2 1 7 7 N 1.28979 * 108.98621 * 180.02562 * 6 5 2 8 8 C 1.34188 * 107.25352 * 0.02562 * 7 6 5 9 9 C 1.48011 * 126.70140 * 179.97438 * 8 7 6 10 10 O 1.21531 * 119.99815 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99868 * 0.02562 * 9 8 7 12 12 C 1.46497 * 119.99944 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47114 * 180.02562 * 12 11 9 14 14 H 1.08997 * 110.92180 * 57.44684 * 13 12 11 15 15 C 1.55155 * 111.00532 * 181.35298 * 13 12 11 16 16 C 1.54327 * 102.94571 * 153.57522 * 15 13 12 17 17 N 1.47024 * 107.26774 * 337.80617 * 16 15 13 18 18 C 1.36941 * 125.64618 * 179.20447 * 17 16 15 19 19 H 1.08005 * 119.99780 * 179.68989 * 18 17 16 20 20 C 1.38813 * 119.99913 * 359.69358 * 18 17 16 21 21 N 1.31616 * 119.99926 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99719 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47311 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47271 * 120.00121 * 22 20 18 25 25 H 1.48501 * 109.46665 * 239.99715 * 22 20 18 26 26 C 1.47426 * 108.70449 * 358.94057 * 17 16 15 27 27 N 1.28868 * 125.32177 * 180.28443 * 5 2 1 28 28 H 1.09005 * 109.46697 * 299.99856 * 1 2 3 29 29 H 1.09003 * 109.47299 * 59.99291 * 1 2 3 30 30 H 1.08996 * 109.47345 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46672 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47630 * 299.99925 * 3 2 1 33 33 H 1.08993 * 109.46901 * 60.00647 * 3 2 1 34 34 H 1.08996 * 109.47148 * 299.99990 * 4 2 1 35 35 H 1.09003 * 109.46859 * 60.00243 * 4 2 1 36 36 H 1.08998 * 109.47027 * 180.02562 * 4 2 1 37 37 H 0.97000 * 120.00160 * 0.02562 * 11 9 8 38 38 H 1.09002 * 109.46937 * 60.00106 * 12 11 9 39 39 H 1.09002 * 109.47231 * 300.00009 * 12 11 9 40 40 H 1.08999 * 110.71965 * 271.93488 * 15 13 12 41 41 H 1.09000 * 110.72417 * 35.03508 * 15 13 12 42 42 H 1.08995 * 109.88184 * 218.39040 * 16 15 13 43 43 H 1.09002 * 109.88385 * 97.22047 * 16 15 13 44 44 H 0.97001 * 119.99407 * 180.02562 * 21 20 18 45 45 H 1.09002 * 110.36518 * 142.96440 * 26 17 16 46 46 H 1.08995 * 110.36673 * 265.17549 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 2.0184 -0.6907 1.1961 6 7 1.2762 -1.2162 2.1071 7 7 2.0307 -1.7390 3.0132 8 6 3.3029 -1.5252 2.6436 9 6 4.5191 -1.9462 3.3747 10 8 5.6182 -1.6864 2.9260 11 7 4.4075 -2.6177 4.5379 12 6 5.6112 -3.0349 5.2612 13 6 5.2080 -3.7734 6.5391 14 1 4.5774 -4.6323 6.3098 15 6 6.4583 -4.2025 7.3515 16 6 5.9244 -4.2700 8.7979 17 7 4.7238 -3.4237 8.8598 18 6 3.9426 -3.2265 9.9672 19 1 3.0801 -2.5788 9.9112 20 6 4.2594 -3.8590 11.1615 21 7 5.3102 -4.6486 11.2295 22 14 3.1934 -3.5905 12.6718 23 1 2.0811 -2.6661 12.3348 24 1 2.6371 -4.8915 13.1227 25 1 4.0150 -3.0001 13.7589 26 6 4.5037 -2.8175 7.5341 27 7 3.2581 -0.8622 1.5035 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6766 -1.7489 -1.2494 35 1 1.6766 -0.2073 -2.1393 36 1 3.1299 -0.7217 -1.2492 37 1 3.5301 -2.8254 4.8958 38 1 6.2023 -2.1564 5.5200 39 1 6.2028 -3.6980 4.6301 40 1 6.8131 -5.1802 7.0254 41 1 7.2494 -3.4578 7.2639 42 1 6.6787 -3.8945 9.4893 43 1 5.6663 -5.2985 9.0502 44 1 5.5313 -5.0908 12.0641 45 1 3.4374 -2.7606 7.3153 46 1 4.9524 -1.8251 7.4916 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028553587.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:51:33 Heat of formation + Delta-G solvation = 89.115948 kcal Electronic energy + Delta-G solvation = -26912.699974 eV Core-core repulsion = 23068.348151 eV Total energy + Delta-G solvation = -3844.351823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.61019 -40.92973 -39.27262 -38.61171 -36.22717 -34.72455 -34.38541 -33.56074 -31.64417 -30.00819 -28.62972 -28.53339 -27.60531 -26.45213 -25.63333 -24.72561 -22.39643 -21.91465 -21.52389 -21.25997 -19.27500 -18.68066 -18.56959 -17.75701 -17.35362 -16.84616 -16.60348 -16.11002 -15.67168 -15.28072 -15.25608 -15.19335 -14.97163 -14.64082 -14.05166 -13.96480 -13.81302 -13.49838 -13.42156 -13.28116 -13.22708 -13.04763 -12.84601 -12.75913 -12.66182 -12.63916 -12.36265 -12.11723 -12.11492 -12.01916 -11.96409 -11.84917 -11.56027 -11.48990 -11.48273 -11.42115 -10.69885 -10.27286 -8.87664 -7.83930 -5.18958 -0.17525 0.24248 0.63788 1.46418 1.47201 1.57671 1.66673 1.86389 2.50366 2.78563 2.94253 3.34280 3.48732 3.56002 3.60038 3.64150 3.83115 3.98753 4.03651 4.04783 4.29293 4.41536 4.45212 4.52953 4.58881 4.60787 4.64497 4.70169 4.72856 4.73227 4.80086 4.93366 5.02411 5.03485 5.11202 5.11422 5.17553 5.19303 5.22194 5.44004 5.47663 5.71252 5.80761 6.17878 6.22386 6.78811 7.03124 7.12542 7.79969 8.43924 9.26729 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.021091 B = 0.002322 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.262276 B =12053.547907 C =13050.743105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.159 3.841 3 C -0.158 4.158 4 C -0.157 4.157 5 N -0.109 5.109 6 N -0.059 5.059 7 N -0.269 5.269 8 C 0.113 3.887 9 C 0.619 3.381 10 O -0.542 6.542 11 N -0.691 5.691 12 C 0.144 3.856 13 C -0.097 4.097 14 H 0.091 0.909 15 C -0.120 4.120 16 C 0.182 3.818 17 N -0.629 5.629 18 C -0.240 4.240 19 H 0.081 0.919 20 C -0.069 4.069 21 N -0.951 5.951 22 Si 0.978 3.022 23 H -0.266 1.266 24 H -0.291 1.291 25 H -0.293 1.293 26 C 0.135 3.865 27 N -0.256 5.256 28 H 0.068 0.932 29 H 0.128 0.872 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.130 0.870 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.129 0.871 36 H 0.064 0.936 37 H 0.418 0.582 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.075 0.925 42 H 0.005 0.995 43 H 0.013 0.987 44 H 0.246 0.754 45 H 0.045 0.955 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.636 9.579 -29.222 31.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.080 3.920 3 C -0.216 4.216 4 C -0.215 4.215 5 N -0.026 5.026 6 N -0.051 5.051 7 N -0.144 5.144 8 C -0.171 4.171 9 C 0.399 3.601 10 O -0.417 6.417 11 N -0.342 5.342 12 C 0.021 3.979 13 C -0.117 4.117 14 H 0.109 0.891 15 C -0.159 4.159 16 C 0.057 3.943 17 N -0.355 5.355 18 C -0.369 4.369 19 H 0.099 0.901 20 C -0.262 4.262 21 N -0.601 5.601 22 Si 0.806 3.194 23 H -0.190 1.190 24 H -0.218 1.218 25 H -0.220 1.220 26 C 0.010 3.990 27 N -0.110 5.110 28 H 0.087 0.913 29 H 0.146 0.854 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.148 0.852 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.148 0.852 36 H 0.083 0.917 37 H 0.255 0.745 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.023 0.977 43 H 0.031 0.969 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -8.476 9.783 -29.454 32.172 hybrid contribution -0.177 -0.262 1.796 1.824 sum -8.653 9.521 -27.658 30.503 Atomic orbital electron populations 1.22185 0.88016 1.04783 1.05866 1.22235 0.98046 0.93405 0.78282 1.22314 1.02592 0.91054 1.05657 1.22309 1.02585 1.01145 0.95465 1.51349 1.00061 1.32811 1.18350 1.78829 1.21526 1.09061 0.95678 1.76141 0.99985 1.18197 1.20028 1.25201 0.94519 1.03280 0.94099 1.16131 0.84458 0.78582 0.80923 1.90822 1.26324 1.56456 1.68071 1.45722 1.12188 1.55302 1.21005 1.21428 0.85752 0.99420 0.91331 1.22436 0.98125 0.98477 0.92636 0.89068 1.22720 0.96527 1.02348 0.94263 1.20942 0.87417 0.93412 0.92559 1.44816 1.29565 1.54048 1.07116 1.19499 1.05963 1.23056 0.88375 0.90074 1.25654 0.99765 0.99911 1.00832 1.70196 1.29083 1.35062 1.25739 0.85016 0.78012 0.77162 0.79193 1.19034 1.21825 1.22038 1.21779 0.98100 0.94567 0.84591 1.74938 1.04009 1.17063 1.14995 0.91314 0.85415 0.91137 0.91701 0.85211 0.92110 0.91915 0.85233 0.91692 0.74526 0.90868 0.89139 0.89279 0.90618 0.97694 0.96876 0.94455 0.93700 0.96144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 7.90 71.98 0.57 -0.34 16 2 C 0.16 1.63 1.30 3.61 0.00 1.64 16 3 C -0.16 -1.21 8.66 71.98 0.62 -0.58 16 4 C -0.16 -1.11 8.66 71.98 0.62 -0.49 16 5 N -0.11 -2.22 3.72 -152.25 -0.57 -2.78 16 6 N -0.06 -1.40 12.21 37.02 0.45 -0.95 16 7 N -0.27 -7.42 12.26 -52.36 -0.64 -8.06 16 8 C 0.11 3.19 8.14 137.15 1.12 4.31 16 9 C 0.62 18.39 7.84 86.84 0.68 19.07 16 10 O -0.54 -18.83 17.10 -3.81 -0.07 -18.90 16 11 N -0.69 -18.31 5.40 -465.83 -2.52 -20.83 16 12 C 0.14 3.80 5.12 86.38 0.44 4.24 16 13 C -0.10 -3.04 3.10 -9.40 -0.03 -3.07 16 14 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 15 C -0.12 -4.15 6.42 31.78 0.20 -3.95 16 16 C 0.18 8.97 5.37 86.73 0.47 9.44 16 17 N -0.63 -32.55 3.39 -691.97 -2.35 -34.90 16 18 C -0.24 -13.66 10.28 84.03 0.86 -12.79 16 19 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 20 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 21 N -0.95 -58.12 10.31 21.65 0.22 -57.90 16 22 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 26 C 0.13 5.36 6.41 86.86 0.56 5.92 16 27 N -0.26 -6.62 11.85 -52.31 -0.62 -7.24 16 28 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.13 -0.16 8.14 -2.39 -0.02 -0.17 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.13 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.42 10.45 8.09 -92.71 -0.75 9.70 16 38 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16 39 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.08 2.42 8.04 -2.39 -0.02 2.40 16 42 H 0.00 0.27 7.51 -2.39 -0.02 0.25 16 43 H 0.01 0.72 7.38 -2.39 -0.02 0.70 16 44 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 45 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.02 0.83 8.01 -2.39 -0.02 0.81 16 Total: -1.00 -76.80 380.91 2.76 -74.04 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.23 Total: 9.05 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 6.59 Total: 19.87 kcal Atomic # 7 Polarization: -126.65 SS G_CDS: -6.02 Total: -132.67 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.07 Total: -18.90 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -76.80 2.76 -74.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028553587.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.155 kcal (2) G-P(sol) polarization free energy of solvation -76.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds