Wall clock time and date at job start Sat Apr 11 2020 00:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34776 * 120.00310 * 2 1 4 4 O 1.21534 * 120.00296 * 185.56597 * 3 2 1 5 5 C 1.48009 * 119.99489 * 5.56494 * 3 2 1 6 6 N 1.34184 * 126.70209 * 5.76026 * 5 3 2 7 7 N 1.28977 * 107.25612 * 179.83216 * 6 5 3 8 8 N 1.28722 * 108.98409 * 0.43355 * 7 6 5 9 9 C 1.46505 * 125.32087 * 179.76575 * 8 7 6 10 10 C 1.53005 * 109.46617 * 239.95460 * 9 8 7 11 11 C 1.53000 * 109.46783 * 359.94850 * 9 8 7 12 12 C 1.52995 * 109.47694 * 119.95434 * 9 8 7 13 13 N 1.28873 * 109.35961 * 359.72104 * 8 7 6 14 14 C 1.46502 * 119.99912 * 180.02562 * 2 1 3 15 15 H 1.09002 * 110.88470 * 176.11975 * 14 2 1 16 16 C 1.55159 * 111.00199 * 300.00035 * 14 2 1 17 17 C 1.54316 * 102.94347 * 82.57491 * 16 14 2 18 18 N 1.47022 * 107.27126 * 22.19311 * 17 16 14 19 19 C 1.36938 * 125.64567 * 181.02871 * 18 17 16 20 20 H 1.07999 * 119.99717 * 175.15771 * 19 18 17 21 21 C 1.38807 * 120.00165 * 355.14802 * 19 18 17 22 22 N 1.31624 * 120.00155 * 156.78400 * 21 19 18 23 23 Si 1.86804 * 120.00165 * 336.51797 * 21 19 18 24 24 H 1.48507 * 109.47105 * 185.88924 * 23 21 19 25 25 H 1.48494 * 109.46952 * 305.88971 * 23 21 19 26 26 H 1.48502 * 109.46924 * 65.89099 * 23 21 19 27 27 C 1.47414 * 108.70246 * 1.28760 * 18 17 16 28 28 H 1.09000 * 109.47353 * 275.69396 * 1 2 3 29 29 H 1.08998 * 109.47148 * 35.69623 * 1 2 3 30 30 H 1.09004 * 109.46999 * 155.69184 * 1 2 3 31 31 H 1.09002 * 109.47021 * 59.99822 * 10 9 8 32 32 H 1.09002 * 109.46802 * 179.97438 * 10 9 8 33 33 H 1.08995 * 109.47268 * 299.99578 * 10 9 8 34 34 H 1.08998 * 109.46917 * 60.00595 * 11 9 8 35 35 H 1.09008 * 109.46780 * 180.02562 * 11 9 8 36 36 H 1.08994 * 109.47547 * 300.00389 * 11 9 8 37 37 H 1.09003 * 109.46932 * 59.99615 * 12 9 8 38 38 H 1.08994 * 109.47260 * 179.97438 * 12 9 8 39 39 H 1.08998 * 109.46947 * 299.99981 * 12 9 8 40 40 H 1.09004 * 110.72177 * 324.20713 * 16 14 2 41 41 H 1.09002 * 110.71843 * 200.93922 * 16 14 2 42 42 H 1.09001 * 109.88130 * 262.77234 * 17 16 14 43 43 H 1.09002 * 110.01051 * 141.68147 * 17 16 14 44 44 H 0.97002 * 119.99429 * 354.72379 * 22 21 19 45 45 H 1.08996 * 110.37155 * 94.48547 * 27 18 17 46 46 H 1.09006 * 110.36497 * 216.80911 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3499 1.1696 -0.1021 5 6 1.4040 2.4459 0.1243 6 7 0.0902 2.5970 0.3510 7 7 -0.1476 3.8640 0.3931 8 7 0.9520 4.5032 0.1947 9 6 1.0904 5.9614 0.1640 10 6 1.6275 6.3939 -1.2018 11 6 -0.2754 6.6083 0.4031 12 6 2.0634 6.4046 1.2583 13 7 1.9122 3.6600 0.0282 14 6 2.1975 -1.2688 -0.0006 15 1 3.2717 -1.0972 -0.0694 16 6 1.8483 -2.1130 1.2535 17 6 0.5311 -2.8068 0.8473 18 7 0.4793 -2.8193 -0.6220 19 6 -0.5405 -3.3293 -1.3803 20 1 -0.5209 -3.2207 -2.4546 21 6 -1.5992 -3.9859 -0.7682 22 7 -2.7619 -4.0721 -1.3792 23 14 -1.3719 -4.7538 0.9195 24 1 -2.5953 -5.5107 1.2878 25 1 -0.2088 -5.6765 0.8908 26 1 -1.1310 -3.6845 1.9214 27 6 1.7099 -2.1974 -1.1436 28 1 -0.3634 0.1020 1.0226 29 1 -0.3633 0.8346 -0.5996 30 1 -0.3633 -0.9366 -0.4231 31 1 0.9342 6.0781 -1.9815 32 1 1.7300 7.4789 -1.2249 33 1 2.6004 5.9330 -1.3722 34 1 -0.6580 6.3002 1.3761 35 1 -0.1725 7.6933 0.3798 36 1 -0.9685 6.2926 -0.3765 37 1 3.0363 5.9436 1.0879 38 1 2.1666 7.4894 1.2351 39 1 1.6807 6.0964 2.2313 40 1 1.6943 -1.4704 2.1204 41 1 2.6270 -2.8496 1.4516 42 1 -0.3184 -2.2505 1.2435 43 1 0.5149 -3.8283 1.2274 44 1 -2.9022 -3.6122 -2.2216 45 1 2.4577 -2.9600 -1.3609 46 1 1.4905 -1.6142 -2.0380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033096867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:51:38 Heat of formation + Delta-G solvation = 151.774830 kcal Electronic energy + Delta-G solvation = -28435.104155 eV Core-core repulsion = 24593.469425 eV Total energy + Delta-G solvation = -3841.634730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.50833 -39.98203 -38.07075 -37.67328 -34.61743 -33.54855 -32.77960 -32.08207 -29.73244 -28.54272 -28.11548 -28.08779 -26.36727 -25.40824 -24.55149 -23.56962 -21.38214 -20.96515 -20.61872 -19.10219 -17.61845 -17.49654 -17.47395 -16.85122 -16.30014 -15.32615 -15.14684 -14.78078 -14.65843 -14.51697 -14.17147 -13.54526 -13.40267 -13.23596 -13.07801 -12.95115 -12.89452 -12.81578 -12.42177 -12.37619 -12.16771 -11.99592 -11.81715 -11.67539 -11.53639 -11.26998 -11.22066 -11.08349 -11.01461 -10.78620 -10.67391 -10.42350 -10.23098 -9.86308 -9.48950 -9.00169 -8.67514 -8.32326 -7.06235 -6.33640 -3.21064 0.94292 1.46590 1.51492 2.82075 3.14504 3.43808 3.53611 3.71233 3.73191 3.96980 3.99447 4.10078 4.45050 4.63833 4.87107 4.89840 4.92012 4.93773 5.07168 5.07787 5.11534 5.13420 5.16564 5.27375 5.40402 5.42970 5.49896 5.55210 5.56941 5.68805 5.77536 5.89492 5.97287 6.01561 6.13317 6.25668 6.30126 6.45067 6.51111 6.70209 6.82156 6.89098 7.49845 7.63767 8.01324 8.23358 8.32348 9.01824 9.54200 10.19649 11.15799 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.021767 B = 0.003248 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.020428 B = 8618.874229 C = 9182.660024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.566 5.566 3 C 0.610 3.390 4 O -0.524 6.524 5 C 0.133 3.867 6 N -0.245 5.245 7 N -0.062 5.062 8 N -0.128 5.128 9 C 0.177 3.823 10 C -0.160 4.160 11 C -0.153 4.153 12 C -0.160 4.160 13 N -0.249 5.249 14 C 0.124 3.876 15 H 0.110 0.890 16 C -0.140 4.140 17 C 0.112 3.888 18 N -0.608 5.608 19 C -0.330 4.330 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.918 5.918 23 Si 1.052 2.948 24 H -0.301 1.301 25 H -0.298 1.298 26 H -0.281 1.281 27 C 0.126 3.874 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.127 0.873 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.028 0.972 44 H 0.263 0.737 45 H 0.040 0.960 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.780 22.935 5.054 25.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.297 5.297 3 C 0.391 3.609 4 O -0.398 6.398 5 C -0.150 4.150 6 N -0.119 5.119 7 N -0.054 5.054 8 N -0.043 5.043 9 C 0.096 3.904 10 C -0.219 4.219 11 C -0.211 4.211 12 C -0.218 4.218 13 N -0.103 5.103 14 C 0.021 3.979 15 H 0.128 0.872 16 C -0.178 4.178 17 C -0.012 4.012 18 N -0.337 5.337 19 C -0.456 4.456 20 H 0.098 0.902 21 C -0.215 4.215 22 N -0.558 5.558 23 Si 0.886 3.114 24 H -0.229 1.229 25 H -0.226 1.226 26 H -0.208 1.208 27 C -0.001 4.001 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.145 0.855 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.045 0.955 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.087 22.367 6.155 24.567 hybrid contribution 1.085 0.539 -1.204 1.708 sum 9.172 22.906 4.951 25.166 Atomic orbital electron populations 1.22589 0.76806 1.06772 1.02486 1.47499 1.08664 1.04009 1.69512 1.16242 0.85602 0.80710 0.78301 1.90793 1.12536 1.86062 1.50441 1.25307 0.89635 0.94183 1.05906 1.76456 1.13149 1.06226 1.16110 1.78929 1.11611 0.99618 1.15250 1.50729 1.02186 1.10115 1.41239 1.21486 0.99855 0.69541 0.99508 1.22259 1.02994 1.03225 0.93390 1.22105 0.93177 1.01203 1.04627 1.22252 0.99335 1.03167 0.97069 1.74957 1.17869 0.99049 1.18385 1.22424 0.96651 0.81820 0.97041 0.87246 1.22984 0.98818 0.98792 0.97246 1.22038 0.95690 0.97467 0.86048 1.45053 1.18494 1.70023 1.00096 1.20083 0.97754 1.36254 0.91558 0.90186 1.25712 0.91781 0.99052 1.04940 1.70907 1.20957 1.45452 1.18510 0.84147 0.73957 0.76705 0.76638 1.22941 1.22641 1.20843 1.21959 0.89676 0.93632 0.94787 0.92648 0.91025 0.85544 0.91237 0.89024 0.90246 0.90463 0.89164 0.90420 0.90247 0.89031 0.91289 0.90882 0.90070 0.93218 0.95476 0.92685 0.94273 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.02 7.65 59.84 0.46 1.48 16 2 N -0.57 -10.06 2.91 -172.39 -0.50 -10.56 16 3 C 0.61 10.97 7.68 -12.26 -0.09 10.88 16 4 O -0.52 -10.29 16.49 5.34 0.09 -10.20 16 5 C 0.13 2.23 7.74 -156.25 -1.21 1.02 16 6 N -0.24 -4.00 9.35 32.10 0.30 -3.70 16 7 N -0.06 -0.87 12.21 60.35 0.74 -0.13 16 8 N -0.13 -1.57 3.72 0.53 0.00 -1.57 16 9 C 0.18 1.31 1.30 -131.82 -0.17 1.14 16 10 C -0.16 -0.97 8.66 37.16 0.32 -0.65 16 11 C -0.15 -0.84 7.90 37.16 0.29 -0.55 16 12 C -0.16 -0.94 8.66 37.15 0.32 -0.62 16 13 N -0.25 -3.73 11.85 32.11 0.38 -3.35 16 14 C 0.12 2.16 3.67 -65.66 -0.24 1.92 16 15 H 0.11 1.80 7.02 -51.93 -0.36 1.43 16 16 C -0.14 -2.34 6.48 -24.90 -0.16 -2.51 16 17 C 0.11 2.35 3.52 -3.07 -0.01 2.34 16 18 N -0.61 -14.13 1.81 -169.95 -0.31 -14.44 16 19 C -0.33 -9.03 10.02 -15.06 -0.15 -9.18 16 20 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 21 C -0.01 -0.41 5.47 -17.43 -0.10 -0.50 16 22 N -0.92 -28.12 13.70 55.49 0.76 -27.36 16 23 Si 1.05 25.99 24.70 -169.99 -4.20 21.79 16 24 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 25 H -0.30 -7.21 7.07 56.52 0.40 -6.81 16 26 H -0.28 -6.30 5.23 56.52 0.30 -6.01 16 27 C 0.13 2.48 6.47 -2.42 -0.02 2.47 16 28 H 0.05 0.98 8.11 -51.93 -0.42 0.56 16 29 H 0.07 1.29 5.97 -51.93 -0.31 0.98 16 30 H 0.13 2.72 4.38 -51.93 -0.23 2.49 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.23 8.14 -51.92 -0.42 -0.19 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.05 1.09 5.87 -51.93 -0.30 0.79 16 43 H 0.03 0.61 4.25 -51.93 -0.22 0.39 16 44 H 0.26 7.98 8.73 -40.82 -0.36 7.62 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 359.60 15.07 5.42 5.42 Total: -1.00 -33.23 359.60 -5.10 -38.34 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.03 Total: -1.47 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -0.75 Total: 7.25 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: 1.37 Total: -61.12 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -4.20 Total: 21.79 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.23 -5.10 -38.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033096867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.111 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds