Wall clock time and date at job start Sat Apr 11 2020 00:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34776 * 120.00310 * 2 1 4 4 O 1.21534 * 120.00296 * 185.56597 * 3 2 1 5 5 C 1.48009 * 119.99489 * 5.56494 * 3 2 1 6 6 N 1.34184 * 126.70209 * 5.76026 * 5 3 2 7 7 N 1.28977 * 107.25612 * 179.83216 * 6 5 3 8 8 N 1.28722 * 108.98409 * 0.43355 * 7 6 5 9 9 C 1.46505 * 125.32087 * 179.76575 * 8 7 6 10 10 C 1.53005 * 109.46617 * 239.95460 * 9 8 7 11 11 C 1.53000 * 109.46783 * 359.94850 * 9 8 7 12 12 C 1.52995 * 109.47694 * 119.95434 * 9 8 7 13 13 N 1.28873 * 109.35961 * 359.72104 * 8 7 6 14 14 C 1.46502 * 119.99912 * 180.02562 * 2 1 3 15 15 H 1.09002 * 110.88470 * 176.11975 * 14 2 1 16 16 C 1.55159 * 111.00199 * 300.00035 * 14 2 1 17 17 C 1.54316 * 102.94347 * 82.57491 * 16 14 2 18 18 N 1.47022 * 107.27126 * 22.19311 * 17 16 14 19 19 C 1.36938 * 125.64567 * 181.02871 * 18 17 16 20 20 H 1.07999 * 119.99717 * 175.15771 * 19 18 17 21 21 C 1.38807 * 120.00165 * 355.14802 * 19 18 17 22 22 N 1.31624 * 120.00155 * 156.78400 * 21 19 18 23 23 Si 1.86804 * 120.00165 * 336.51797 * 21 19 18 24 24 H 1.48507 * 109.47105 * 185.88924 * 23 21 19 25 25 H 1.48494 * 109.46952 * 305.88971 * 23 21 19 26 26 H 1.48502 * 109.46924 * 65.89099 * 23 21 19 27 27 C 1.47414 * 108.70246 * 1.28760 * 18 17 16 28 28 H 1.09000 * 109.47353 * 275.69396 * 1 2 3 29 29 H 1.08998 * 109.47148 * 35.69623 * 1 2 3 30 30 H 1.09004 * 109.46999 * 155.69184 * 1 2 3 31 31 H 1.09002 * 109.47021 * 59.99822 * 10 9 8 32 32 H 1.09002 * 109.46802 * 179.97438 * 10 9 8 33 33 H 1.08995 * 109.47268 * 299.99578 * 10 9 8 34 34 H 1.08998 * 109.46917 * 60.00595 * 11 9 8 35 35 H 1.09008 * 109.46780 * 180.02562 * 11 9 8 36 36 H 1.08994 * 109.47547 * 300.00389 * 11 9 8 37 37 H 1.09003 * 109.46932 * 59.99615 * 12 9 8 38 38 H 1.08994 * 109.47260 * 179.97438 * 12 9 8 39 39 H 1.08998 * 109.46947 * 299.99981 * 12 9 8 40 40 H 1.09004 * 110.72177 * 324.20713 * 16 14 2 41 41 H 1.09002 * 110.71843 * 200.93922 * 16 14 2 42 42 H 1.09001 * 109.88130 * 262.77234 * 17 16 14 43 43 H 1.09002 * 110.01051 * 141.68147 * 17 16 14 44 44 H 0.97002 * 119.99429 * 354.72379 * 22 21 19 45 45 H 1.08996 * 110.37155 * 94.48547 * 27 18 17 46 46 H 1.09006 * 110.36497 * 216.80911 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3499 1.1696 -0.1021 5 6 1.4040 2.4459 0.1243 6 7 0.0902 2.5970 0.3510 7 7 -0.1476 3.8640 0.3931 8 7 0.9520 4.5032 0.1947 9 6 1.0904 5.9614 0.1640 10 6 1.6275 6.3939 -1.2018 11 6 -0.2754 6.6083 0.4031 12 6 2.0634 6.4046 1.2583 13 7 1.9122 3.6600 0.0282 14 6 2.1975 -1.2688 -0.0006 15 1 3.2717 -1.0972 -0.0694 16 6 1.8483 -2.1130 1.2535 17 6 0.5311 -2.8068 0.8473 18 7 0.4793 -2.8193 -0.6220 19 6 -0.5405 -3.3293 -1.3803 20 1 -0.5209 -3.2207 -2.4546 21 6 -1.5992 -3.9859 -0.7682 22 7 -2.7619 -4.0721 -1.3792 23 14 -1.3719 -4.7538 0.9195 24 1 -2.5953 -5.5107 1.2878 25 1 -0.2088 -5.6765 0.8908 26 1 -1.1310 -3.6845 1.9214 27 6 1.7099 -2.1974 -1.1436 28 1 -0.3634 0.1020 1.0226 29 1 -0.3633 0.8346 -0.5996 30 1 -0.3633 -0.9366 -0.4231 31 1 0.9342 6.0781 -1.9815 32 1 1.7300 7.4789 -1.2249 33 1 2.6004 5.9330 -1.3722 34 1 -0.6580 6.3002 1.3761 35 1 -0.1725 7.6933 0.3798 36 1 -0.9685 6.2926 -0.3765 37 1 3.0363 5.9436 1.0879 38 1 2.1666 7.4894 1.2351 39 1 1.6807 6.0964 2.2313 40 1 1.6943 -1.4704 2.1204 41 1 2.6270 -2.8496 1.4516 42 1 -0.3184 -2.2505 1.2435 43 1 0.5149 -3.8283 1.2274 44 1 -2.9022 -3.6122 -2.2216 45 1 2.4577 -2.9600 -1.3609 46 1 1.4905 -1.6142 -2.0380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033096867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:51:37 Heat of formation + Delta-G solvation = 128.879167 kcal Electronic energy + Delta-G solvation = -28436.096986 eV Core-core repulsion = 24593.469425 eV Total energy + Delta-G solvation = -3842.627560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.62396 -41.43399 -39.39520 -38.62211 -36.18037 -34.71223 -34.44626 -33.45875 -31.47293 -30.10330 -28.66139 -28.54959 -27.83268 -26.75256 -25.68299 -25.27168 -22.78914 -22.39258 -21.86134 -20.48887 -19.52735 -18.76662 -18.56797 -17.94293 -17.66348 -16.99580 -16.57810 -16.21013 -15.55129 -15.29655 -15.23288 -15.20974 -14.96245 -14.61827 -14.47377 -14.07911 -13.65311 -13.47901 -13.43696 -13.35717 -13.25623 -13.16487 -13.03132 -12.86550 -12.75814 -12.67816 -12.58543 -12.30590 -12.20602 -12.12124 -12.08130 -11.89619 -11.58253 -11.48778 -11.31749 -10.92845 -10.60882 -9.90952 -9.02193 -8.59962 -5.38015 -0.20380 0.23426 0.63376 1.47240 1.53768 1.56212 1.76754 1.78693 2.60977 2.64757 2.90183 3.10343 3.32546 3.47261 3.50269 3.61005 3.67335 3.73901 3.91258 4.14658 4.23755 4.30926 4.39793 4.39973 4.51224 4.52044 4.58267 4.59099 4.66998 4.70988 4.71387 4.75736 4.84463 4.89411 4.96086 5.00433 5.09583 5.12695 5.17041 5.20058 5.27339 5.40926 5.59062 6.06275 6.13766 6.65275 6.85736 7.03299 7.47696 8.12397 8.91655 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.021767 B = 0.003248 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.020428 B = 8618.874229 C = 9182.660024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.567 5.567 3 C 0.614 3.386 4 O -0.542 6.542 5 C 0.114 3.886 6 N -0.265 5.265 7 N -0.064 5.064 8 N -0.108 5.108 9 C 0.158 3.842 10 C -0.157 4.157 11 C -0.150 4.150 12 C -0.156 4.156 13 N -0.253 5.253 14 C 0.131 3.869 15 H 0.127 0.873 16 C -0.125 4.125 17 C 0.104 3.896 18 N -0.622 5.622 19 C -0.310 4.310 20 H 0.047 0.953 21 C -0.070 4.070 22 N -0.957 5.957 23 Si 1.091 2.909 24 H -0.317 1.317 25 H -0.286 1.286 26 H -0.244 1.244 27 C 0.125 3.875 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.131 0.869 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.129 0.871 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.130 0.870 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.039 0.961 43 H 0.027 0.973 44 H 0.249 0.751 45 H 0.056 0.944 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.679 25.349 7.029 28.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.298 5.298 3 C 0.397 3.603 4 O -0.417 6.417 5 C -0.170 4.170 6 N -0.139 5.139 7 N -0.056 5.056 8 N -0.025 5.025 9 C 0.080 3.920 10 C -0.216 4.216 11 C -0.208 4.208 12 C -0.214 4.214 13 N -0.108 5.108 14 C 0.028 3.972 15 H 0.145 0.855 16 C -0.164 4.164 17 C -0.020 4.020 18 N -0.350 5.350 19 C -0.438 4.438 20 H 0.065 0.935 21 C -0.264 4.264 22 N -0.601 5.601 23 Si 0.919 3.081 24 H -0.246 1.246 25 H -0.214 1.214 26 H -0.169 1.169 27 C -0.001 4.001 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.149 0.851 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.147 0.853 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.149 0.851 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.129 0.871 42 H 0.057 0.943 43 H 0.044 0.956 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.026 24.815 8.138 27.974 hybrid contribution 0.547 0.013 -1.944 2.020 sum 10.573 24.828 6.193 27.687 Atomic orbital electron populations 1.22300 0.77266 1.04868 1.02568 1.47511 1.08309 1.04388 1.69560 1.16290 0.85389 0.81019 0.77585 1.90773 1.13208 1.86432 1.51332 1.25090 0.89929 0.94305 1.07627 1.76397 1.13141 1.07399 1.16977 1.78856 1.12183 0.99078 1.15476 1.51367 1.01073 1.11458 1.38619 1.22251 1.01758 0.66943 1.01091 1.22313 1.01652 1.05602 0.91985 1.22179 0.91538 1.03345 1.03740 1.22301 0.97774 1.05501 0.95839 1.74918 1.18641 0.98860 1.18362 1.22417 0.97285 0.81200 0.96295 0.85500 1.22979 0.97150 0.99078 0.97157 1.22153 0.97867 0.97684 0.84264 1.44991 1.18863 1.69787 1.01357 1.19893 0.98729 1.34618 0.90587 0.93457 1.26857 0.91390 1.00066 1.08051 1.71009 1.22637 1.47671 1.18767 0.83690 0.73514 0.76862 0.74023 1.24627 1.21389 1.16858 1.22075 0.88641 0.94132 0.95242 0.91928 0.91132 0.88643 0.92250 0.85083 0.91697 0.91203 0.85297 0.91454 0.91683 0.85130 0.91976 0.89048 0.87118 0.94276 0.95554 0.94238 0.92655 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.66 7.65 127.77 0.98 3.64 16 2 N -0.57 -19.56 2.91 -817.61 -2.38 -21.94 16 3 C 0.61 21.55 7.68 86.83 0.67 22.22 16 4 O -0.54 -20.59 16.49 -3.82 -0.06 -20.65 16 5 C 0.11 3.75 7.74 137.15 1.06 4.81 16 6 N -0.27 -8.59 9.35 -52.37 -0.49 -9.08 16 7 N -0.06 -1.77 12.21 37.02 0.45 -1.32 16 8 N -0.11 -2.54 3.72 -152.25 -0.57 -3.11 16 9 C 0.16 1.99 1.30 3.60 0.00 2.00 16 10 C -0.16 -1.53 8.66 71.98 0.62 -0.90 16 11 C -0.15 -1.25 7.90 71.98 0.57 -0.68 16 12 C -0.16 -1.41 8.66 71.98 0.62 -0.78 16 13 N -0.25 -7.40 11.85 -52.32 -0.62 -8.02 16 14 C 0.13 4.28 3.67 46.46 0.17 4.45 16 15 H 0.13 3.79 7.02 -2.39 -0.02 3.78 16 16 C -0.13 -3.76 6.48 31.78 0.21 -3.56 16 17 C 0.10 4.14 3.52 86.73 0.30 4.45 16 18 N -0.62 -28.61 1.81 -691.59 -1.25 -29.86 16 19 C -0.31 -17.41 10.02 84.03 0.84 -16.56 16 20 H 0.05 2.90 8.06 -2.91 -0.02 2.88 16 21 C -0.07 -4.06 5.47 84.86 0.46 -3.60 16 22 N -0.96 -60.91 13.70 21.65 0.30 -60.61 16 23 Si 1.09 52.35 24.70 68.60 1.69 54.04 16 24 H -0.32 -15.96 7.11 99.48 0.71 -15.25 16 25 H -0.29 -13.08 7.07 99.48 0.70 -12.38 16 26 H -0.24 -10.17 5.23 99.48 0.52 -9.65 16 27 C 0.12 4.80 6.47 86.93 0.56 5.36 16 28 H 0.06 2.17 8.11 -2.39 -0.02 2.16 16 29 H 0.07 2.58 5.97 -2.39 -0.01 2.57 16 30 H 0.10 4.15 4.38 -2.38 -0.01 4.14 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.13 0.23 8.14 -2.39 -0.02 0.22 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.13 0.09 8.14 -2.38 -0.02 0.07 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 39 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 41 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 42 H 0.04 1.64 5.87 -2.39 -0.01 1.63 16 43 H 0.03 1.09 4.25 -2.39 -0.01 1.08 16 44 H 0.25 15.93 8.73 -92.71 -0.81 15.12 16 45 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -75.08 359.60 4.90 -70.18 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 0.76 Total: 9.53 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 7.08 Total: 20.84 kcal Atomic # 7 Polarization: -129.37 SS G_CDS: -4.56 Total: -133.93 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.06 Total: -20.65 kcal Atomic # 14 Polarization: 52.35 SS G_CDS: 1.69 Total: 54.04 kcal Total: -75.08 4.90 -70.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033096867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.055 kcal (2) G-P(sol) polarization free energy of solvation -75.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds