Wall clock time and date at job start Sat Apr 11 2020 00:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 120.00048 * 2 1 4 4 O 1.21537 * 120.00051 * 175.85575 * 3 2 1 5 5 C 1.48005 * 119.99777 * 355.85675 * 3 2 1 6 6 N 1.34188 * 126.69944 * 6.39392 * 5 3 2 7 7 N 1.28987 * 107.25112 * 179.97438 * 6 5 3 8 8 N 1.28719 * 108.98825 * 0.02562 * 7 6 5 9 9 C 1.46494 * 125.32087 * 180.02562 * 8 7 6 10 10 C 1.53008 * 109.47052 * 359.97176 * 9 8 7 11 11 C 1.52998 * 109.47522 * 119.97050 * 9 8 7 12 12 C 1.52999 * 109.47067 * 239.97390 * 9 8 7 13 13 N 1.28872 * 109.36038 * 359.76016 * 8 7 6 14 14 C 1.46506 * 119.99909 * 179.97438 * 2 1 3 15 15 H 1.09007 * 110.63626 * 178.31500 * 14 2 1 16 16 C 1.55150 * 110.71963 * 54.97874 * 14 2 1 17 17 C 1.55126 * 101.48832 * 205.96431 * 16 14 2 18 18 N 1.47432 * 104.71715 * 37.29821 * 17 16 14 19 19 C 1.36932 * 125.64761 * 155.81640 * 18 17 16 20 20 H 1.07995 * 120.00214 * 192.52300 * 19 18 17 21 21 C 1.38822 * 119.99868 * 12.52599 * 19 18 17 22 22 N 1.31617 * 119.99839 * 204.99732 * 21 19 18 23 23 Si 1.86800 * 120.00162 * 24.99572 * 21 19 18 24 24 H 1.48501 * 109.46999 * 270.00114 * 23 21 19 25 25 H 1.48501 * 109.46850 * 30.00096 * 23 21 19 26 26 H 1.48495 * 109.46930 * 149.99974 * 23 21 19 27 27 C 1.47015 * 108.70324 * 335.54929 * 18 17 16 28 28 H 1.09000 * 109.47261 * 275.70295 * 1 2 3 29 29 H 1.09005 * 109.47175 * 35.70775 * 1 2 3 30 30 H 1.09010 * 109.47105 * 155.70744 * 1 2 3 31 31 H 1.08996 * 109.46910 * 60.00220 * 10 9 8 32 32 H 1.08996 * 109.46894 * 180.02562 * 10 9 8 33 33 H 1.09004 * 109.46609 * 300.00155 * 10 9 8 34 34 H 1.09004 * 109.47391 * 59.99897 * 11 9 8 35 35 H 1.09001 * 109.47588 * 179.97438 * 11 9 8 36 36 H 1.08996 * 109.47311 * 300.00313 * 11 9 8 37 37 H 1.08997 * 109.47273 * 59.99611 * 12 9 8 38 38 H 1.09001 * 109.47070 * 180.02562 * 12 9 8 39 39 H 1.09004 * 109.46654 * 299.99373 * 12 9 8 40 40 H 1.08996 * 111.00713 * 324.20835 * 16 14 2 41 41 H 1.09005 * 111.00281 * 88.01857 * 16 14 2 42 42 H 1.08990 * 110.50171 * 278.45983 * 17 16 14 43 43 H 1.08995 * 110.34254 * 156.05601 * 17 16 14 44 44 H 0.97004 * 120.00210 * 354.93351 * 22 21 19 45 45 H 1.09001 * 109.87952 * 120.70668 * 27 18 17 46 46 H 1.09004 * 109.88788 * 241.87113 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3519 1.1686 0.0761 5 6 1.4017 2.4473 -0.0926 6 7 0.0701 2.6098 -0.0619 7 7 -0.1636 3.8738 -0.1698 8 7 0.9568 4.5001 -0.2661 9 6 1.1071 5.9508 -0.4038 10 6 -0.2747 6.6077 -0.4163 11 6 1.9192 6.4936 0.7738 12 6 1.8336 6.2662 -1.7129 13 7 1.9259 3.6520 -0.2168 14 6 2.1975 -1.2688 0.0006 15 1 3.2727 -1.0917 -0.0295 16 6 1.7507 -2.1611 -1.1874 17 6 2.0692 -3.5793 -0.6455 18 7 1.7324 -3.5167 0.7884 19 6 1.4003 -4.5853 1.5776 20 1 0.9759 -4.4220 2.5572 21 6 1.6093 -5.8787 1.1185 22 7 0.8872 -6.8707 1.5946 23 14 2.9154 -6.2110 -0.1750 24 1 2.3137 -6.0938 -1.5275 25 1 4.0141 -5.2219 -0.0345 26 1 3.4567 -7.5815 0.0089 27 6 1.8182 -2.1177 1.2322 28 1 -0.3634 0.1021 1.0226 29 1 -0.3634 0.8345 -0.5998 30 1 -0.3634 -0.9368 -0.4228 31 1 -0.7922 6.3830 0.5163 32 1 -0.1629 7.6870 -0.5193 33 1 -0.8532 6.2210 -1.2553 34 1 2.9036 6.0256 0.7828 35 1 2.0314 7.5729 0.6711 36 1 1.4016 6.2689 1.7063 37 1 1.2551 5.8795 -2.5518 38 1 1.9458 7.3456 -1.8151 39 1 2.8180 5.7982 -1.7039 40 1 0.6851 -2.0446 -1.3844 41 1 2.3369 -1.9447 -2.0806 42 1 3.1263 -3.8097 -0.7771 43 1 1.4522 -4.3243 -1.1479 44 1 0.2608 -6.7111 2.3179 45 1 0.8540 -1.7932 1.6235 46 1 2.5848 -2.0190 2.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033096868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:51:42 Heat of formation + Delta-G solvation = 141.242456 kcal Electronic energy + Delta-G solvation = -27812.870278 eV Core-core repulsion = 23970.778830 eV Total energy + Delta-G solvation = -3842.091448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.186 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.67341 -40.02133 -38.12307 -37.60234 -35.12437 -33.72621 -32.86842 -32.13676 -29.57231 -28.37126 -28.17633 -28.14714 -26.88737 -25.51803 -24.69727 -23.62177 -21.33940 -21.07595 -20.55024 -19.17663 -17.77303 -17.65838 -17.41098 -16.98154 -16.53428 -15.39635 -15.06831 -14.85489 -14.75993 -14.61274 -14.21728 -13.54916 -13.51202 -13.40095 -13.21674 -13.11667 -13.03454 -12.98859 -12.60648 -12.46901 -12.36403 -12.20367 -12.09926 -11.72098 -11.63016 -11.33772 -11.24114 -11.11280 -11.00376 -10.95821 -10.66428 -10.57665 -10.24065 -9.96216 -9.56228 -9.23035 -8.58518 -8.44839 -7.06447 -6.29972 -3.18069 0.79962 1.28419 1.37126 2.62546 2.99621 3.44167 3.56439 3.58607 3.70333 3.76508 3.89281 4.00015 4.29508 4.62003 4.75558 4.81358 4.82288 4.91541 4.98140 5.02185 5.03657 5.03833 5.11711 5.25994 5.30058 5.36022 5.38804 5.44031 5.46665 5.55797 5.58952 5.77101 5.83287 5.85623 5.94997 6.08909 6.26819 6.38802 6.52064 6.57607 6.73922 6.76824 7.28181 7.72049 7.85098 8.06791 8.36454 9.05882 9.60439 10.27235 11.18097 Molecular weight = 322.19amu Principal moments of inertia in cm(-1) A = 0.036080 B = 0.002571 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.872042 B =10889.056629 C =11131.804188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.577 5.577 3 C 0.612 3.388 4 O -0.514 6.514 5 C 0.135 3.865 6 N -0.253 5.253 7 N -0.060 5.060 8 N -0.125 5.125 9 C 0.176 3.824 10 C -0.153 4.153 11 C -0.161 4.161 12 C -0.160 4.160 13 N -0.247 5.247 14 C 0.127 3.873 15 H 0.111 0.889 16 C -0.140 4.140 17 C 0.107 3.893 18 N -0.606 5.606 19 C -0.326 4.326 20 H 0.076 0.924 21 C -0.020 4.020 22 N -0.920 5.920 23 Si 1.063 2.937 24 H -0.293 1.293 25 H -0.286 1.286 26 H -0.299 1.299 27 C 0.129 3.871 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.035 0.965 43 H 0.065 0.935 44 H 0.262 0.738 45 H 0.036 0.964 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.501 30.768 -7.169 31.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.309 5.309 3 C 0.393 3.607 4 O -0.386 6.386 5 C -0.149 4.149 6 N -0.127 5.127 7 N -0.053 5.053 8 N -0.040 5.040 9 C 0.096 3.904 10 C -0.211 4.211 11 C -0.219 4.219 12 C -0.219 4.219 13 N -0.099 5.099 14 C 0.024 3.976 15 H 0.129 0.871 16 C -0.179 4.179 17 C -0.019 4.019 18 N -0.334 5.334 19 C -0.453 4.453 20 H 0.093 0.907 21 C -0.220 4.220 22 N -0.561 5.561 23 Si 0.895 3.105 24 H -0.221 1.221 25 H -0.213 1.213 26 H -0.227 1.227 27 C 0.002 3.998 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.054 0.946 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.707 29.908 -7.997 30.967 hybrid contribution -0.367 0.934 1.124 1.507 sum -1.074 30.842 -6.873 31.617 Atomic orbital electron populations 1.22267 0.77941 1.04307 1.03242 1.47593 1.08089 1.04661 1.70539 1.16183 0.85697 0.80556 0.78260 1.90836 1.12315 1.85874 1.49576 1.25315 0.89026 0.94419 1.06157 1.76300 1.13364 1.06140 1.16946 1.78901 1.11352 0.99975 1.15045 1.50735 1.00862 1.10458 1.41919 1.21524 0.99896 0.69667 0.99347 1.22110 0.92829 1.01240 1.04922 1.22266 1.00990 1.02667 0.96005 1.22262 1.01690 1.03899 0.94026 1.74993 1.17977 0.98866 1.18111 1.22377 0.97346 0.80741 0.97123 0.87148 1.23186 1.01878 0.96080 0.96734 1.22057 0.98605 0.94879 0.86353 1.44762 1.82048 1.02238 1.04355 1.20032 1.39244 0.84613 1.01448 0.90657 1.25880 1.01347 0.90944 1.03868 1.70913 1.23935 1.34310 1.26969 0.83866 0.76829 0.74636 0.75163 1.22083 1.21253 1.22657 1.21574 0.98829 0.85688 0.93724 0.91941 0.88768 0.89978 0.90453 0.89077 0.90461 0.90168 0.88937 0.91239 0.91254 0.88934 0.90195 0.90401 0.90990 0.94780 0.91710 0.92723 0.94562 0.94921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 8.41 59.85 0.50 1.40 16 2 N -0.58 -9.17 2.88 -172.88 -0.50 -9.67 16 3 C 0.61 10.17 7.69 -12.26 -0.09 10.08 16 4 O -0.51 -9.87 16.48 5.33 0.09 -9.78 16 5 C 0.13 1.99 7.81 -156.24 -1.22 0.77 16 6 N -0.25 -3.45 9.07 32.10 0.29 -3.16 16 7 N -0.06 -0.72 12.21 60.35 0.74 0.02 16 8 N -0.13 -1.32 3.72 0.52 0.00 -1.32 16 9 C 0.18 1.07 1.30 -131.82 -0.17 0.90 16 10 C -0.15 -0.62 7.90 37.16 0.29 -0.33 16 11 C -0.16 -0.80 8.66 37.16 0.32 -0.47 16 12 C -0.16 -0.76 8.66 37.16 0.32 -0.44 16 13 N -0.25 -3.32 11.85 32.11 0.38 -2.94 16 14 C 0.13 2.26 3.35 -66.10 -0.22 2.04 16 15 H 0.11 2.04 7.00 -51.92 -0.36 1.68 16 16 C -0.14 -2.39 6.60 -24.47 -0.16 -2.56 16 17 C 0.11 2.31 4.71 -2.41 -0.01 2.30 16 18 N -0.61 -15.00 3.27 -169.94 -0.56 -15.55 16 19 C -0.33 -9.40 10.44 -15.06 -0.16 -9.55 16 20 H 0.08 2.30 8.06 -52.49 -0.42 1.87 16 21 C -0.02 -0.59 5.42 -17.43 -0.09 -0.68 16 22 N -0.92 -28.91 13.70 55.49 0.76 -28.15 16 23 Si 1.06 26.78 24.69 -169.99 -4.20 22.58 16 24 H -0.29 -6.91 6.61 56.52 0.37 -6.54 16 25 H -0.29 -6.88 6.24 56.52 0.35 -6.52 16 26 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 27 C 0.13 2.70 6.88 -3.07 -0.02 2.67 16 28 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 29 H 0.09 1.21 5.27 -51.93 -0.27 0.93 16 30 H 0.08 1.12 6.13 -51.92 -0.32 0.80 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 1.25 6.14 -51.93 -0.32 0.93 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.03 0.75 5.61 -51.93 -0.29 0.46 16 43 H 0.06 1.47 6.23 -51.93 -0.32 1.15 16 44 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 45 H 0.04 0.75 7.07 -51.93 -0.37 0.39 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -34.92 363.55 -5.20 -40.12 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -6.98 Total: -3.75 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -0.71 Total: 6.12 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: 1.12 Total: -60.77 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 26.78 SS G_CDS: -4.20 Total: 22.58 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.92 -5.20 -40.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033096868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.363 kcal (2) G-P(sol) polarization free energy of solvation -34.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds