Wall clock time and date at job start Sat Apr 11 2020 00:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86806 * 119.99897 * 2 1 4 4 H 1.48498 * 109.47293 * 240.00271 * 3 2 1 5 5 H 1.48500 * 109.47044 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47066 * 119.99886 * 3 2 1 7 7 C 1.39931 * 120.00556 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00255 * 196.79563 * 7 2 1 9 9 C 1.41416 * 119.99574 * 16.79224 * 7 2 1 10 10 C 1.40776 * 120.20864 * 25.17569 * 9 7 2 11 11 C 1.37646 * 119.88023 * 179.97438 * 10 9 7 12 12 C 1.38524 * 120.32585 * 0.02562 * 11 10 9 13 13 C 1.39251 * 120.42578 * 0.02562 * 12 11 10 14 14 N 1.39942 * 119.94635 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00462 * 145.79112 * 14 13 12 16 16 O 1.21291 * 119.99691 * 354.88191 * 15 14 13 17 17 C 1.50695 * 120.00325 * 174.88931 * 15 14 13 18 18 H 1.08999 * 109.30277 * 60.25980 * 17 15 14 19 19 C 1.52780 * 109.51911 * 300.48046 * 17 15 14 20 20 C 1.52591 * 110.69951 * 169.90831 * 19 17 15 21 21 C 1.53037 * 109.98877 * 69.99094 * 20 19 17 22 22 S 1.81671 * 108.99858 * 296.35510 * 21 20 19 23 23 O 1.42105 * 108.66251 * 299.96879 * 22 21 20 24 24 O 1.42098 * 108.66292 * 168.62478 * 22 21 20 25 25 C 1.53037 * 109.38367 * 179.97438 * 17 15 14 26 26 C 1.38277 * 120.11008 * 0.25712 * 13 12 11 27 27 H 0.97002 * 120.00336 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.06061 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.83527 * 180.02562 * 11 10 9 30 30 H 1.08006 * 119.78771 * 179.97438 * 12 11 10 31 31 H 0.97003 * 119.99843 * 325.79058 * 14 13 12 32 32 H 1.08998 * 109.21018 * 49.59281 * 19 17 15 33 33 H 1.09000 * 109.18939 * 290.20178 * 19 17 15 34 34 H 1.09001 * 109.38291 * 309.83089 * 20 19 17 35 35 H 1.08998 * 109.38651 * 190.15148 * 20 19 17 36 36 H 1.08994 * 109.54863 * 176.49976 * 21 20 19 37 37 H 1.08998 * 109.62736 * 56.25659 * 21 20 19 38 38 H 1.08997 * 109.55259 * 63.94498 * 25 17 15 39 39 H 1.09003 * 109.55015 * 303.74851 * 25 17 15 40 40 H 1.07996 * 120.16420 * 179.73043 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6966 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0534 -1.2318 0.2697 9 6 1.3462 -2.4102 -0.3549 10 6 0.2110 -2.3732 -1.1866 11 6 -0.4277 -3.5438 -1.5277 12 6 0.0407 -4.7592 -1.0561 13 6 1.1618 -4.8110 -0.2318 14 7 1.6261 -6.0443 0.2393 15 6 2.9476 -6.2461 0.4105 16 8 3.7405 -5.3939 0.0694 17 6 3.4403 -7.5307 1.0255 18 1 3.1252 -8.3706 0.4064 19 6 2.8504 -7.6850 2.4263 20 6 3.1255 -9.0815 2.9765 21 6 4.6160 -9.2374 3.2865 22 16 5.5594 -9.0987 1.7401 23 8 5.1351 -10.1261 0.8549 24 8 6.9390 -8.9785 2.0584 25 6 4.9684 -7.5030 1.1037 26 6 1.8137 -3.6454 0.1268 27 1 -0.4851 0.8400 0.0004 28 1 -0.1582 -1.4280 -1.5564 29 1 -1.2983 -3.5146 -2.1662 30 1 -0.4673 -5.6724 -1.3289 31 1 0.9968 -6.7538 0.4427 32 1 1.7736 -7.5220 2.3821 33 1 3.2991 -6.9437 3.0876 34 1 2.8298 -9.8261 2.2375 35 1 2.5486 -9.2309 3.8891 36 1 4.7947 -10.2139 3.7364 37 1 4.9302 -8.4547 3.9769 38 1 5.2850 -6.7036 1.7736 39 1 5.3815 -7.3310 0.1097 40 1 2.6806 -3.6842 0.7696 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593739195.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:56:14 Heat of formation + Delta-G solvation = -93.593859 kcal Electronic energy + Delta-G solvation = -24824.061082 eV Core-core repulsion = 21116.401980 eV Total energy + Delta-G solvation = -3707.659103 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.20600 -37.78070 -37.23138 -36.47534 -36.26046 -34.57797 -33.10720 -32.23948 -29.87744 -28.60896 -27.74278 -25.37898 -24.72362 -22.18377 -21.29346 -20.82983 -19.55053 -19.11956 -17.95635 -17.49524 -16.72892 -16.04673 -15.86933 -15.69265 -15.43560 -15.29257 -14.90653 -14.62001 -14.06760 -13.89258 -13.70888 -13.31770 -13.04298 -12.88450 -12.44376 -12.29101 -12.26337 -12.19609 -11.87505 -11.74301 -11.70246 -11.39823 -11.22511 -11.14529 -11.03472 -10.96534 -10.56154 -10.52783 -10.20333 -9.72787 -9.47462 -9.11882 -9.04173 -7.50628 -6.99093 -6.76037 -4.38734 -0.26245 2.35483 2.46498 2.79820 3.06117 3.09508 3.15561 3.25869 3.35821 3.44039 3.65229 3.93028 4.06820 4.19724 4.30401 4.37145 4.58599 4.60584 4.82478 4.84981 5.13089 5.15205 5.26330 5.42261 5.49048 5.66440 5.69011 5.74123 6.19394 6.33410 6.66508 6.95279 6.98231 7.01340 7.20369 7.48488 7.66003 7.91294 8.03312 8.09557 8.18898 8.53845 8.65054 8.88843 8.93226 10.17278 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.002957 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.898647 B = 9465.689196 C =10222.192672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.077 3.923 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.459 4.459 8 H 0.078 0.922 9 C 0.120 3.880 10 C -0.171 4.171 11 C -0.092 4.092 12 C -0.261 4.261 13 C 0.149 3.851 14 N -0.665 5.665 15 C 0.514 3.486 16 O -0.510 6.510 17 C -0.096 4.096 18 H 0.116 0.884 19 C -0.137 4.137 20 C -0.107 4.107 21 C -0.606 4.606 22 S 2.419 3.581 23 O -0.937 6.937 24 O -0.942 6.942 25 C -0.583 4.583 26 C -0.211 4.211 27 H 0.281 0.719 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.399 0.601 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.886 -15.489 6.843 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.489 4.489 8 H 0.096 0.904 9 C 0.117 3.883 10 C -0.190 4.190 11 C -0.111 4.111 12 C -0.282 4.282 13 C 0.058 3.942 14 N -0.309 5.309 15 C 0.298 3.702 16 O -0.384 6.384 17 C -0.119 4.119 18 H 0.134 0.866 19 C -0.174 4.174 20 C -0.145 4.145 21 C -0.736 4.736 22 S 2.601 3.399 23 O -0.935 6.935 24 O -0.939 6.939 25 C -0.713 4.713 26 C -0.233 4.233 27 H 0.092 0.908 28 H 0.137 0.863 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.160 0.840 39 H 0.163 0.837 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.927 -15.320 6.280 17.017 hybrid contribution -0.545 0.995 0.507 1.243 sum 3.383 -14.325 6.787 16.209 Atomic orbital electron populations 1.69808 1.07546 1.29301 1.35369 1.25896 0.94738 1.01285 0.92189 0.86358 0.80131 0.80110 0.80077 1.18764 1.20334 1.19002 1.19556 0.97771 0.90993 1.40573 0.90401 1.17481 0.90881 0.91612 0.88300 1.21364 0.99316 0.96901 1.01445 1.20470 0.98532 0.92703 0.99416 1.20042 1.02417 0.96933 1.08843 1.17424 0.96241 0.83240 0.97301 1.43423 1.06841 1.15240 1.65375 1.20133 0.82671 0.88099 0.79297 1.90771 1.54481 1.44813 1.48328 1.21078 0.92609 0.99358 0.98819 0.86578 1.21808 1.03623 0.97756 0.94261 1.21268 0.92022 0.97477 1.03729 1.30264 1.09646 1.11753 1.21889 1.08010 0.76036 0.77721 0.78113 1.93588 1.83561 1.53741 1.62572 1.93605 1.29324 1.86662 1.84296 1.30162 1.03623 1.22511 1.14966 1.20948 1.04379 0.90998 1.06958 0.90828 0.86294 0.89005 0.89244 0.76697 0.88836 0.89618 0.89403 0.88951 0.84759 0.84662 0.84003 0.83744 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.35 10.94 55.55 0.61 -19.75 16 2 C 0.08 1.92 5.16 -17.35 -0.09 1.84 16 3 Si 0.91 18.81 29.59 -169.99 -5.03 13.78 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 7 C -0.46 -12.39 9.05 -37.74 -0.34 -12.74 16 8 H 0.08 2.07 7.90 -52.49 -0.41 1.65 16 9 C 0.12 3.24 5.57 -106.84 -0.59 2.64 16 10 C -0.17 -4.39 8.69 -38.84 -0.34 -4.73 16 11 C -0.09 -2.10 10.02 -39.69 -0.40 -2.50 16 12 C -0.26 -5.54 9.97 -39.10 -0.39 -5.93 16 13 C 0.15 3.22 6.25 -83.76 -0.52 2.70 16 14 N -0.66 -10.70 5.09 -9.91 -0.05 -10.75 16 15 C 0.51 8.09 6.89 -10.99 -0.08 8.02 16 16 O -0.51 -10.48 13.69 5.55 0.08 -10.41 16 17 C -0.10 -0.96 2.36 -91.87 -0.22 -1.18 16 18 H 0.12 0.93 8.02 -51.93 -0.42 0.51 16 19 C -0.14 -0.98 4.92 -27.05 -0.13 -1.11 16 20 C -0.11 -0.55 5.73 -26.92 -0.15 -0.71 16 21 C -0.61 -3.20 6.35 37.18 0.24 -2.96 16 22 S 2.42 21.07 5.31 -107.50 -0.57 20.50 16 23 O -0.94 -10.89 17.95 -57.81 -1.04 -11.93 16 24 O -0.94 -11.71 18.10 -57.81 -1.05 -12.76 16 25 C -0.58 -5.65 4.94 37.18 0.18 -5.47 16 26 C -0.21 -5.29 8.39 -38.68 -0.32 -5.61 16 27 H 0.28 6.54 8.30 -40.82 -0.34 6.21 16 28 H 0.12 3.15 6.17 -52.49 -0.32 2.83 16 29 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 30 H 0.09 1.62 8.06 -52.48 -0.42 1.20 16 31 H 0.40 4.71 8.28 -40.82 -0.34 4.37 16 32 H 0.09 0.61 7.36 -51.93 -0.38 0.23 16 33 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.09 0.41 8.02 -51.93 -0.42 -0.01 16 35 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.14 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.14 1.51 7.99 -51.93 -0.42 1.10 16 40 H 0.10 2.67 6.48 -52.49 -0.34 2.33 16 LS Contribution 341.55 15.07 5.15 5.15 Total: -1.00 -35.94 341.55 -10.20 -46.14 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.14 Total: 7.76 kcal Atomic # 6 Polarization: -24.58 SS G_CDS: -3.16 Total: -27.74 kcal Atomic # 7 Polarization: -31.05 SS G_CDS: 0.56 Total: -30.50 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -2.01 Total: -35.09 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Atomic # 16 Polarization: 21.07 SS G_CDS: -0.57 Total: 20.50 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.94 -10.20 -46.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593739195.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.457 kcal (2) G-P(sol) polarization free energy of solvation -35.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds