Wall clock time and date at job start Sat Apr 11 2020 00:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86806 * 119.99897 * 2 1 4 4 H 1.48498 * 109.47293 * 240.00271 * 3 2 1 5 5 H 1.48500 * 109.47044 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47066 * 119.99886 * 3 2 1 7 7 C 1.39931 * 120.00556 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00255 * 196.79563 * 7 2 1 9 9 C 1.41416 * 119.99574 * 16.79224 * 7 2 1 10 10 C 1.40776 * 120.20864 * 25.17569 * 9 7 2 11 11 C 1.37646 * 119.88023 * 179.97438 * 10 9 7 12 12 C 1.38524 * 120.32585 * 0.02562 * 11 10 9 13 13 C 1.39251 * 120.42578 * 0.02562 * 12 11 10 14 14 N 1.39942 * 119.94635 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00462 * 145.79112 * 14 13 12 16 16 O 1.21291 * 119.99691 * 354.88191 * 15 14 13 17 17 C 1.50695 * 120.00325 * 174.88931 * 15 14 13 18 18 H 1.08999 * 109.30277 * 60.25980 * 17 15 14 19 19 C 1.52780 * 109.51911 * 300.48046 * 17 15 14 20 20 C 1.52591 * 110.69951 * 169.90831 * 19 17 15 21 21 C 1.53037 * 109.98877 * 69.99094 * 20 19 17 22 22 S 1.81671 * 108.99858 * 296.35510 * 21 20 19 23 23 O 1.42105 * 108.66251 * 299.96879 * 22 21 20 24 24 O 1.42098 * 108.66292 * 168.62478 * 22 21 20 25 25 C 1.53037 * 109.38367 * 179.97438 * 17 15 14 26 26 C 1.38277 * 120.11008 * 0.25712 * 13 12 11 27 27 H 0.97002 * 120.00336 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.06061 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.83527 * 180.02562 * 11 10 9 30 30 H 1.08006 * 119.78771 * 179.97438 * 12 11 10 31 31 H 0.97003 * 119.99843 * 325.79058 * 14 13 12 32 32 H 1.08998 * 109.21018 * 49.59281 * 19 17 15 33 33 H 1.09000 * 109.18939 * 290.20178 * 19 17 15 34 34 H 1.09001 * 109.38291 * 309.83089 * 20 19 17 35 35 H 1.08998 * 109.38651 * 190.15148 * 20 19 17 36 36 H 1.08994 * 109.54863 * 176.49976 * 21 20 19 37 37 H 1.08998 * 109.62736 * 56.25659 * 21 20 19 38 38 H 1.08997 * 109.55259 * 63.94498 * 25 17 15 39 39 H 1.09003 * 109.55015 * 303.74851 * 25 17 15 40 40 H 1.07996 * 120.16420 * 179.73043 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6966 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6965 1.2125 7 6 2.0080 -1.2118 -0.0005 8 1 3.0534 -1.2318 0.2697 9 6 1.3462 -2.4102 -0.3549 10 6 0.2110 -2.3732 -1.1866 11 6 -0.4277 -3.5438 -1.5277 12 6 0.0407 -4.7592 -1.0561 13 6 1.1618 -4.8110 -0.2318 14 7 1.6261 -6.0443 0.2393 15 6 2.9476 -6.2461 0.4105 16 8 3.7405 -5.3939 0.0694 17 6 3.4403 -7.5307 1.0255 18 1 3.1252 -8.3706 0.4064 19 6 2.8504 -7.6850 2.4263 20 6 3.1255 -9.0815 2.9765 21 6 4.6160 -9.2374 3.2865 22 16 5.5594 -9.0987 1.7401 23 8 5.1351 -10.1261 0.8549 24 8 6.9390 -8.9785 2.0584 25 6 4.9684 -7.5030 1.1037 26 6 1.8137 -3.6454 0.1268 27 1 -0.4851 0.8400 0.0004 28 1 -0.1582 -1.4280 -1.5564 29 1 -1.2983 -3.5146 -2.1662 30 1 -0.4673 -5.6724 -1.3289 31 1 0.9968 -6.7538 0.4427 32 1 1.7736 -7.5220 2.3821 33 1 3.2991 -6.9437 3.0876 34 1 2.8298 -9.8261 2.2375 35 1 2.5486 -9.2309 3.8891 36 1 4.7947 -10.2139 3.7364 37 1 4.9302 -8.4547 3.9769 38 1 5.2850 -6.7036 1.7736 39 1 5.3815 -7.3310 0.1097 40 1 2.6806 -3.6842 0.7696 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593739195.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:56:13 Heat of formation + Delta-G solvation = -120.124524 kcal Electronic energy + Delta-G solvation = -24825.211538 eV Core-core repulsion = 21116.401980 eV Total energy + Delta-G solvation = -3708.809558 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.51632 -39.24320 -38.22247 -37.35855 -37.08415 -36.24826 -34.83576 -32.95596 -31.76369 -30.12163 -28.54404 -27.27152 -25.70623 -23.22419 -22.77874 -22.30473 -20.88193 -19.84303 -19.57176 -18.63791 -17.59020 -17.38311 -16.93946 -16.83807 -16.63997 -16.51316 -16.32055 -15.78778 -15.25927 -15.18919 -14.67497 -14.57360 -14.29358 -13.97193 -13.85965 -13.53624 -13.26149 -13.11124 -13.08238 -12.98981 -12.92030 -12.77417 -12.43574 -12.40159 -12.19973 -12.00108 -11.88430 -11.80859 -11.53925 -11.23261 -11.11637 -10.86509 -10.58515 -9.40792 -8.76904 -8.61973 -6.38636 -0.95219 0.84426 0.99250 1.35119 1.45613 1.48918 1.68198 1.75650 2.18613 2.23054 2.70584 2.72459 2.93156 3.32514 3.55108 3.69141 3.73916 3.78611 3.92887 4.04366 4.32040 4.44682 4.47073 4.62619 4.64862 4.71624 4.86965 5.03441 5.06610 5.08436 5.10570 5.12279 5.23186 5.28290 5.32131 5.74382 5.84961 6.07184 6.09900 6.33257 6.62120 6.67336 6.92487 6.99833 7.30451 8.31527 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.020331 B = 0.002957 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.898647 B = 9465.689196 C =10222.192672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.040 3.960 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.089 3.911 10 C -0.199 4.199 11 C -0.092 4.092 12 C -0.250 4.250 13 C 0.158 3.842 14 N -0.654 5.654 15 C 0.509 3.491 16 O -0.565 6.565 17 C -0.086 4.086 18 H 0.142 0.858 19 C -0.139 4.139 20 C -0.105 4.105 21 C -0.581 4.581 22 S 2.433 3.567 23 O -0.968 6.968 24 O -0.985 6.985 25 C -0.594 4.594 26 C -0.237 4.237 27 H 0.290 0.710 28 H 0.103 0.897 29 H 0.122 0.878 30 H 0.133 0.867 31 H 0.424 0.576 32 H 0.106 0.894 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.122 0.878 36 H 0.162 0.838 37 H 0.157 0.843 38 H 0.142 0.858 39 H 0.126 0.874 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 -17.767 8.236 19.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.175 4.175 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.184 1.184 6 H -0.186 1.186 7 C -0.534 4.534 8 H 0.081 0.919 9 C 0.086 3.914 10 C -0.219 4.219 11 C -0.111 4.111 12 C -0.271 4.271 13 C 0.065 3.935 14 N -0.300 5.300 15 C 0.296 3.704 16 O -0.442 6.442 17 C -0.108 4.108 18 H 0.160 0.840 19 C -0.177 4.177 20 C -0.143 4.143 21 C -0.714 4.714 22 S 2.619 3.381 23 O -0.965 6.965 24 O -0.982 6.982 25 C -0.722 4.722 26 C -0.259 4.259 27 H 0.100 0.900 28 H 0.121 0.879 29 H 0.140 0.860 30 H 0.151 0.849 31 H 0.262 0.738 32 H 0.124 0.876 33 H 0.104 0.896 34 H 0.118 0.882 35 H 0.140 0.860 36 H 0.180 0.820 37 H 0.175 0.825 38 H 0.160 0.840 39 H 0.144 0.856 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.487 -17.646 7.644 19.391 hybrid contribution -0.158 1.536 0.096 1.547 sum 2.328 -16.109 7.740 18.023 Atomic orbital electron populations 1.69840 1.08685 1.30625 1.35556 1.26655 0.95565 1.04117 0.91184 0.85312 0.78925 0.75937 0.79876 1.18873 1.18413 1.18641 1.19723 0.97524 0.92780 1.43421 0.91914 1.17821 0.91895 0.92451 0.89192 1.21320 1.00123 0.97604 1.02849 1.20844 0.98898 0.92280 0.99076 1.20498 1.01661 0.98017 1.06952 1.17497 0.95520 0.84387 0.96142 1.43334 1.07802 1.13991 1.64877 1.21230 0.81854 0.89395 0.77901 1.90759 1.55788 1.47288 1.50371 1.21170 0.92514 0.96291 1.00873 0.84011 1.21917 1.04149 0.99565 0.92023 1.21365 0.91716 0.95944 1.05285 1.30097 1.08796 1.14272 1.18210 1.07510 0.75369 0.76126 0.79142 1.93539 1.83803 1.54227 1.64945 1.93546 1.32712 1.86822 1.85138 1.30256 1.03692 1.23895 1.14391 1.20938 1.04688 0.92198 1.08037 0.89974 0.87926 0.86030 0.84885 0.73752 0.87598 0.89604 0.88209 0.86003 0.81990 0.82509 0.84017 0.85572 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.38 10.94 21.82 0.24 -43.15 16 2 C 0.04 2.08 5.16 85.25 0.44 2.52 16 3 Si 0.98 39.69 29.59 68.60 2.03 41.72 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.50 -28.99 9.05 23.46 0.21 -28.77 16 8 H 0.06 3.61 7.90 -2.91 -0.02 3.59 16 9 C 0.09 5.05 5.57 -21.30 -0.12 4.93 16 10 C -0.20 -10.59 8.69 22.75 0.20 -10.39 16 11 C -0.09 -4.12 10.02 22.20 0.22 -3.90 16 12 C -0.25 -10.06 9.97 22.58 0.23 -9.84 16 13 C 0.16 6.72 6.25 38.10 0.24 6.96 16 14 N -0.65 -19.96 5.09 -303.65 -1.54 -21.50 16 15 C 0.51 15.83 6.89 87.66 0.60 16.44 16 16 O -0.56 -24.24 13.69 -3.06 -0.04 -24.28 16 17 C -0.09 -1.58 2.36 -11.60 -0.03 -1.60 16 18 H 0.14 1.86 8.02 -2.39 -0.02 1.84 16 19 C -0.14 -1.51 4.92 30.39 0.15 -1.36 16 20 C -0.11 -0.55 5.73 30.47 0.17 -0.37 16 21 C -0.58 -3.64 6.35 71.99 0.46 -3.18 16 22 S 2.43 39.26 5.31 -56.49 -0.30 38.96 16 23 O -0.97 -21.17 17.95 -127.40 -2.29 -23.45 16 24 O -0.99 -24.36 18.10 -127.40 -2.31 -26.67 16 25 C -0.59 -11.48 4.94 71.99 0.36 -11.12 16 26 C -0.24 -12.37 8.39 22.85 0.19 -12.18 16 27 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 28 H 0.10 5.69 6.17 -2.91 -0.02 5.67 16 29 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 30 H 0.13 4.19 8.06 -2.91 -0.02 4.17 16 31 H 0.42 8.53 8.28 -92.71 -0.77 7.76 16 32 H 0.11 0.93 7.36 -2.39 -0.02 0.91 16 33 H 0.09 0.97 8.09 -2.39 -0.02 0.95 16 34 H 0.10 0.39 8.02 -2.39 -0.02 0.37 16 35 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.16 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.16 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.13 2.86 7.99 -2.39 -0.02 2.84 16 40 H 0.09 4.71 6.48 -2.91 -0.02 4.69 16 Total: -1.00 -84.34 341.55 -0.58 -84.93 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.30 Total: 25.30 kcal Atomic # 6 Polarization: -55.19 SS G_CDS: 3.32 Total: -51.87 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: -1.31 Total: -64.65 kcal Atomic # 8 Polarization: -69.77 SS G_CDS: -4.63 Total: -74.41 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Atomic # 16 Polarization: 39.26 SS G_CDS: -0.30 Total: 38.96 kcal Total: -84.34 -0.58 -84.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593739195.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.196 kcal (2) G-P(sol) polarization free energy of solvation -84.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds