Wall clock time and date at job start Sat Apr 11 2020 00:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86794 * 120.00577 * 2 1 4 4 H 1.48505 * 109.47379 * 269.44004 * 3 2 1 5 5 H 1.48501 * 109.46990 * 29.43888 * 3 2 1 6 6 H 1.48502 * 109.47181 * 149.43775 * 3 2 1 7 7 C 1.40277 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00030 * 354.16079 * 7 2 1 9 9 C 1.40884 * 120.00449 * 174.16108 * 7 2 1 10 10 C 1.40709 * 120.32867 * 321.63319 * 9 7 2 11 11 C 1.37592 * 119.88340 * 180.29498 * 10 9 7 12 12 C 1.38822 * 120.57317 * 359.68057 * 11 10 9 13 13 C 1.38227 * 120.67351 * 359.97438 * 12 11 10 14 14 C 1.39220 * 120.09010 * 0.02856 * 13 12 11 15 15 C 1.47431 * 120.28165 * 179.97438 * 14 13 12 16 16 O 1.21613 * 120.00257 * 175.25947 * 15 14 13 17 17 N 1.34778 * 120.00155 * 355.54153 * 15 14 13 18 18 C 1.46499 * 120.00190 * 179.72254 * 17 15 14 19 19 H 1.08998 * 109.38438 * 324.79028 * 18 17 15 20 20 C 1.52592 * 109.38394 * 84.47611 * 18 17 15 21 21 C 1.52588 * 110.63872 * 190.14405 * 20 18 17 22 22 C 1.53040 * 109.98536 * 290.00619 * 21 20 18 23 23 S 1.81675 * 108.99357 * 63.65417 * 22 21 20 24 24 O 1.42097 * 108.66027 * 191.36692 * 23 22 21 25 25 O 1.42095 * 108.74805 * 60.06240 * 23 22 21 26 26 C 1.53041 * 109.38515 * 204.99901 * 18 17 15 27 27 H 0.97000 * 119.99018 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.05607 * 359.97430 * 10 9 7 29 29 H 1.08009 * 119.71592 * 179.69538 * 11 10 9 30 30 H 1.08001 * 119.66812 * 180.02562 * 12 11 10 31 31 H 1.07998 * 119.95377 * 180.02562 * 13 12 11 32 32 H 0.96998 * 119.99531 * 359.72338 * 17 15 14 33 33 H 1.08999 * 109.23889 * 310.44145 * 20 18 17 34 34 H 1.09000 * 109.23993 * 69.84565 * 20 18 17 35 35 H 1.09000 * 109.38301 * 169.85743 * 21 20 18 36 36 H 1.08994 * 109.30407 * 50.11891 * 21 20 18 37 37 H 1.08993 * 109.55296 * 303.79681 * 22 21 20 38 38 H 1.09000 * 109.62675 * 183.55216 * 22 21 20 39 39 H 1.09004 * 109.54753 * 296.05352 * 26 18 17 40 40 H 1.08998 * 109.54651 * 56.24110 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 2.4999 2.0395 -1.4000 5 1 1.4321 2.6560 0.6881 6 1 3.5320 1.4434 0.7119 7 6 2.0076 -1.2149 -0.0005 8 1 1.4718 -2.1478 0.0942 9 6 3.4110 -1.2181 -0.1247 10 6 4.0503 -0.3068 -0.9852 11 6 5.4210 -0.3221 -1.1040 12 6 6.1828 -1.2260 -0.3762 13 6 5.5796 -2.1268 0.4813 14 6 4.1946 -2.1357 0.6229 15 6 3.5468 -3.0951 1.5359 16 8 2.3461 -3.0422 1.7215 17 7 4.2861 -4.0271 2.1693 18 6 3.6433 -4.9765 3.0812 19 1 2.8258 -4.4796 3.6035 20 6 3.0899 -6.1520 2.2810 21 6 2.2019 -7.0295 3.1584 22 6 3.0556 -7.7737 4.1877 23 16 3.8366 -6.5631 5.2944 24 8 4.8243 -7.2274 6.0705 25 8 2.8182 -5.8218 5.9520 26 6 4.6693 -5.4752 4.1014 27 1 -0.4849 0.8401 0.0004 28 1 3.4657 0.4000 -1.5554 29 1 5.9086 0.3754 -1.7691 30 1 7.2578 -1.2249 -0.4804 31 1 6.1835 -2.8247 1.0422 32 1 5.2438 -4.0693 2.0213 33 1 2.5046 -5.7725 1.4434 34 1 3.9185 -6.7481 1.8987 35 1 1.6769 -7.7520 2.5336 36 1 1.4752 -6.4032 3.6758 37 1 3.8260 -8.3493 3.6749 38 1 2.4246 -8.4457 4.7694 39 1 5.4544 -6.0302 3.5878 40 1 5.1065 -4.6247 4.6245 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601152650.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:56:24 Heat of formation + Delta-G solvation = -85.855929 kcal Electronic energy + Delta-G solvation = -25297.507072 eV Core-core repulsion = 21590.183511 eV Total energy + Delta-G solvation = -3707.323561 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.50985 -37.83356 -37.14250 -36.35140 -36.20124 -33.97409 -33.44955 -31.11276 -30.52752 -29.46495 -27.80509 -25.48161 -23.63259 -22.41162 -21.44902 -20.62953 -19.83403 -18.89915 -17.71277 -17.10055 -16.98409 -16.34092 -15.83789 -15.47016 -15.18297 -14.98152 -14.83211 -14.18400 -14.14396 -13.77252 -13.58905 -13.39676 -13.18200 -12.75195 -12.59327 -12.31984 -12.19213 -12.09834 -11.95126 -11.76904 -11.55841 -11.51426 -11.18160 -11.00237 -10.95130 -10.78563 -10.51279 -10.48462 -10.13528 -9.84248 -9.31394 -8.62663 -8.60614 -7.90051 -7.65769 -6.92819 -4.52446 -0.20825 2.01678 2.41738 2.53343 3.05807 3.15330 3.25440 3.42860 3.58584 3.82280 3.88849 3.93920 4.23824 4.38988 4.45841 4.53114 4.58467 4.82233 5.08621 5.15006 5.28250 5.31211 5.40380 5.61090 5.68919 5.74019 5.85156 5.94392 6.05338 6.13473 6.30815 6.42925 6.72479 6.90097 7.04123 7.15942 7.30785 7.50585 7.66961 7.93650 8.17820 8.42015 8.55703 8.77013 9.21329 10.05270 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.018969 B = 0.003615 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.703046 B = 7743.605224 C = 8469.782889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.078 3.922 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.243 1.243 7 C -0.395 4.395 8 H 0.115 0.885 9 C 0.118 3.882 10 C -0.225 4.225 11 C -0.065 4.065 12 C -0.252 4.252 13 C -0.043 4.043 14 C -0.249 4.249 15 C 0.561 3.439 16 O -0.519 6.519 17 N -0.740 5.740 18 C 0.165 3.835 19 H 0.105 0.895 20 C -0.153 4.153 21 C -0.108 4.108 22 C -0.601 4.601 23 S 2.423 3.577 24 O -0.946 6.946 25 O -0.930 6.930 26 C -0.619 4.619 27 H 0.287 0.713 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.394 0.606 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.132 0.868 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.161 -11.538 4.292 14.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.166 1.166 7 C -0.422 4.422 8 H 0.133 0.867 9 C 0.113 3.887 10 C -0.244 4.244 11 C -0.084 4.084 12 C -0.272 4.272 13 C -0.062 4.062 14 C -0.254 4.254 15 C 0.354 3.646 16 O -0.395 6.395 17 N -0.396 5.396 18 C 0.058 3.942 19 H 0.123 0.877 20 C -0.192 4.192 21 C -0.147 4.147 22 C -0.731 4.731 23 S 2.604 3.396 24 O -0.943 6.943 25 O -0.927 6.927 26 C -0.748 4.748 27 H 0.098 0.902 28 H 0.124 0.876 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.229 0.771 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.155 0.845 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.953 -11.342 5.383 14.351 hybrid contribution 1.031 0.637 -0.980 1.558 sum 7.983 -10.705 4.403 14.061 Atomic orbital electron populations 1.69541 1.08121 1.30345 1.33788 1.26309 0.94920 1.01514 0.91417 0.86385 0.81008 0.79768 0.79352 1.19434 1.21634 1.16635 1.19952 0.90064 0.96081 1.36151 0.86704 1.17549 0.93441 0.89395 0.88324 1.21202 0.94320 1.04916 1.03928 1.20751 0.93891 0.96674 0.97071 1.20300 0.97752 1.02974 1.06132 1.20780 0.93400 0.96167 0.95819 1.19404 0.92459 1.07184 1.06328 1.18419 0.86636 0.79819 0.79766 1.90789 1.14186 1.71257 1.63260 1.46040 1.11256 1.34348 1.47920 1.20374 0.93849 0.90609 0.89375 0.87667 1.22182 1.00403 0.96160 1.00428 1.21242 0.97905 0.98886 0.96624 1.30240 1.12463 1.15888 1.14518 1.07909 0.76436 0.77811 0.77409 1.93591 1.60302 1.74321 1.66039 1.93621 1.57500 1.70634 1.70987 1.30681 1.11952 1.16665 1.15454 0.90215 0.87646 0.88506 0.88494 0.88696 0.77135 0.88570 0.90870 0.89198 0.89243 0.84922 0.84779 0.84531 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.32 13.92 55.56 0.77 -20.54 16 2 C 0.08 2.06 5.50 -17.30 -0.10 1.97 16 3 Si 0.91 20.48 24.48 -169.99 -4.16 16.32 16 4 H -0.27 -5.73 6.70 56.52 0.38 -5.35 16 5 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.24 -5.62 6.68 56.52 0.38 -5.24 16 7 C -0.40 -10.76 8.08 -37.81 -0.31 -11.06 16 8 H 0.12 3.43 6.36 -52.49 -0.33 3.09 16 9 C 0.12 2.92 5.04 -106.54 -0.54 2.38 16 10 C -0.22 -5.13 6.94 -38.88 -0.27 -5.40 16 11 C -0.07 -1.30 10.01 -39.60 -0.40 -1.70 16 12 C -0.25 -4.72 10.03 -39.37 -0.39 -5.11 16 13 C -0.04 -0.80 9.52 -39.22 -0.37 -1.18 16 14 C -0.25 -5.53 5.92 -104.37 -0.62 -6.14 16 15 C 0.56 11.81 7.63 -12.52 -0.10 11.72 16 16 O -0.52 -12.93 13.33 5.27 0.07 -12.86 16 17 N -0.74 -11.27 5.02 -55.06 -0.28 -11.54 16 18 C 0.16 2.10 2.28 -68.12 -0.16 1.94 16 19 H 0.11 1.60 7.44 -51.93 -0.39 1.21 16 20 C -0.15 -1.66 5.19 -27.15 -0.14 -1.80 16 21 C -0.11 -0.95 5.73 -26.92 -0.15 -1.11 16 22 C -0.60 -4.14 6.35 37.18 0.24 -3.91 16 23 S 2.42 23.39 5.30 -107.50 -0.57 22.82 16 24 O -0.95 -11.70 18.10 -57.82 -1.05 -12.75 16 25 O -0.93 -12.89 17.95 -57.82 -1.04 -13.93 16 26 C -0.62 -5.52 5.81 37.18 0.22 -5.31 16 27 H 0.29 6.94 8.29 -40.82 -0.34 6.61 16 28 H 0.11 2.38 4.88 -52.48 -0.26 2.12 16 29 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 30 H 0.10 1.54 8.06 -52.49 -0.42 1.11 16 31 H 0.10 1.40 6.42 -52.49 -0.34 1.06 16 32 H 0.39 4.88 6.65 -40.82 -0.27 4.61 16 33 H 0.10 1.31 8.08 -51.93 -0.42 0.89 16 34 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.89 8.01 -51.93 -0.42 0.47 16 37 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.14 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.14 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 333.70 15.07 5.03 5.03 Total: -1.00 -34.91 333.70 -9.29 -44.20 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -4.98 Total: 7.96 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -3.08 Total: -24.71 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.50 Total: -32.09 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -2.01 Total: -39.53 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.16 Total: 16.32 kcal Atomic # 16 Polarization: 23.39 SS G_CDS: -0.57 Total: 22.82 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.91 -9.29 -44.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601152650.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.656 kcal (2) G-P(sol) polarization free energy of solvation -34.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds