Wall clock time and date at job start Sat Apr 11 2020 00:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86794 * 120.00577 * 2 1 4 4 H 1.48505 * 109.47379 * 269.44004 * 3 2 1 5 5 H 1.48501 * 109.46990 * 29.43888 * 3 2 1 6 6 H 1.48502 * 109.47181 * 149.43775 * 3 2 1 7 7 C 1.40277 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00030 * 354.16079 * 7 2 1 9 9 C 1.40884 * 120.00449 * 174.16108 * 7 2 1 10 10 C 1.40709 * 120.32867 * 321.63319 * 9 7 2 11 11 C 1.37592 * 119.88340 * 180.29498 * 10 9 7 12 12 C 1.38822 * 120.57317 * 359.68057 * 11 10 9 13 13 C 1.38227 * 120.67351 * 359.97438 * 12 11 10 14 14 C 1.39220 * 120.09010 * 0.02856 * 13 12 11 15 15 C 1.47431 * 120.28165 * 179.97438 * 14 13 12 16 16 O 1.21613 * 120.00257 * 175.25947 * 15 14 13 17 17 N 1.34778 * 120.00155 * 355.54153 * 15 14 13 18 18 C 1.46499 * 120.00190 * 179.72254 * 17 15 14 19 19 H 1.08998 * 109.38438 * 324.79028 * 18 17 15 20 20 C 1.52592 * 109.38394 * 84.47611 * 18 17 15 21 21 C 1.52588 * 110.63872 * 190.14405 * 20 18 17 22 22 C 1.53040 * 109.98536 * 290.00619 * 21 20 18 23 23 S 1.81675 * 108.99357 * 63.65417 * 22 21 20 24 24 O 1.42097 * 108.66027 * 191.36692 * 23 22 21 25 25 O 1.42095 * 108.74805 * 60.06240 * 23 22 21 26 26 C 1.53041 * 109.38515 * 204.99901 * 18 17 15 27 27 H 0.97000 * 119.99018 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.05607 * 359.97430 * 10 9 7 29 29 H 1.08009 * 119.71592 * 179.69538 * 11 10 9 30 30 H 1.08001 * 119.66812 * 180.02562 * 12 11 10 31 31 H 1.07998 * 119.95377 * 180.02562 * 13 12 11 32 32 H 0.96998 * 119.99531 * 359.72338 * 17 15 14 33 33 H 1.08999 * 109.23889 * 310.44145 * 20 18 17 34 34 H 1.09000 * 109.23993 * 69.84565 * 20 18 17 35 35 H 1.09000 * 109.38301 * 169.85743 * 21 20 18 36 36 H 1.08994 * 109.30407 * 50.11891 * 21 20 18 37 37 H 1.08993 * 109.55296 * 303.79681 * 22 21 20 38 38 H 1.09000 * 109.62675 * 183.55216 * 22 21 20 39 39 H 1.09004 * 109.54753 * 296.05352 * 26 18 17 40 40 H 1.08998 * 109.54651 * 56.24110 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 2.4999 2.0395 -1.4000 5 1 1.4321 2.6560 0.6881 6 1 3.5320 1.4434 0.7119 7 6 2.0076 -1.2149 -0.0005 8 1 1.4718 -2.1478 0.0942 9 6 3.4110 -1.2181 -0.1247 10 6 4.0503 -0.3068 -0.9852 11 6 5.4210 -0.3221 -1.1040 12 6 6.1828 -1.2260 -0.3762 13 6 5.5796 -2.1268 0.4813 14 6 4.1946 -2.1357 0.6229 15 6 3.5468 -3.0951 1.5359 16 8 2.3461 -3.0422 1.7215 17 7 4.2861 -4.0271 2.1693 18 6 3.6433 -4.9765 3.0812 19 1 2.8258 -4.4796 3.6035 20 6 3.0899 -6.1520 2.2810 21 6 2.2019 -7.0295 3.1584 22 6 3.0556 -7.7737 4.1877 23 16 3.8366 -6.5631 5.2944 24 8 4.8243 -7.2274 6.0705 25 8 2.8182 -5.8218 5.9520 26 6 4.6693 -5.4752 4.1014 27 1 -0.4849 0.8401 0.0004 28 1 3.4657 0.4000 -1.5554 29 1 5.9086 0.3754 -1.7691 30 1 7.2578 -1.2249 -0.4804 31 1 6.1835 -2.8247 1.0422 32 1 5.2438 -4.0693 2.0213 33 1 2.5046 -5.7725 1.4434 34 1 3.9185 -6.7481 1.8987 35 1 1.6769 -7.7520 2.5336 36 1 1.4752 -6.4032 3.6758 37 1 3.8260 -8.3493 3.6749 38 1 2.4246 -8.4457 4.7694 39 1 5.4544 -6.0302 3.5878 40 1 5.1065 -4.6247 4.6245 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601152650.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:56:23 Heat of formation + Delta-G solvation = -114.239512 kcal Electronic energy + Delta-G solvation = -25298.737876 eV Core-core repulsion = 21590.183511 eV Total energy + Delta-G solvation = -3708.554365 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.01962 -39.20832 -38.20732 -37.61801 -37.10854 -35.60947 -34.82447 -32.44624 -32.27181 -30.79366 -28.58728 -27.23458 -24.83033 -23.78753 -22.88619 -21.82567 -21.32229 -19.78457 -19.45637 -18.51363 -18.00777 -17.31347 -17.05928 -16.77242 -16.42294 -16.07331 -15.92850 -15.77767 -15.58162 -15.33128 -14.90093 -14.50248 -14.38101 -14.12643 -13.89145 -13.79251 -13.30471 -13.26176 -13.10782 -12.89229 -12.67548 -12.61212 -12.53720 -12.39589 -12.21283 -12.06964 -11.96553 -11.80925 -11.60322 -11.22118 -11.08232 -10.33549 -10.03626 -9.52418 -9.40252 -8.80015 -6.46761 -0.97399 0.34072 0.83657 1.23332 1.36463 1.45210 1.66372 2.09909 2.25364 2.40096 2.68498 2.72736 2.94880 3.43845 3.50509 3.64155 3.76439 3.83242 4.03470 4.22639 4.24379 4.32248 4.37629 4.45676 4.58717 4.69041 4.72983 4.79664 4.86863 4.99701 5.01658 5.19135 5.22430 5.31167 5.46103 5.59630 5.67926 5.86409 5.95405 6.26328 6.46698 6.66344 6.79385 6.90154 7.63505 8.25509 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.018969 B = 0.003615 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.703046 B = 7743.605224 C = 8469.782889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.034 3.966 3 Si 0.967 3.033 4 H -0.247 1.247 5 H -0.284 1.284 6 H -0.250 1.250 7 C -0.443 4.443 8 H 0.064 0.936 9 C 0.100 3.900 10 C -0.247 4.247 11 C -0.063 4.063 12 C -0.227 4.227 13 C -0.040 4.040 14 C -0.263 4.263 15 C 0.554 3.446 16 O -0.570 6.570 17 N -0.716 5.716 18 C 0.155 3.845 19 H 0.067 0.933 20 C -0.151 4.151 21 C -0.110 4.110 22 C -0.576 4.576 23 S 2.428 3.572 24 O -0.971 6.971 25 O -0.985 6.985 26 C -0.608 4.608 27 H 0.291 0.709 28 H 0.101 0.899 29 H 0.135 0.865 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.412 0.588 33 H 0.058 0.942 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.066 0.934 37 H 0.174 0.826 38 H 0.156 0.844 39 H 0.183 0.817 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.571 -13.087 3.767 19.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.179 4.179 3 Si 0.790 3.210 4 H -0.172 1.172 5 H -0.211 1.211 6 H -0.174 1.174 7 C -0.472 4.472 8 H 0.082 0.918 9 C 0.096 3.904 10 C -0.266 4.266 11 C -0.081 4.081 12 C -0.246 4.246 13 C -0.059 4.059 14 C -0.268 4.268 15 C 0.346 3.654 16 O -0.450 6.450 17 N -0.372 5.372 18 C 0.049 3.951 19 H 0.085 0.915 20 C -0.189 4.189 21 C -0.149 4.149 22 C -0.709 4.709 23 S 2.614 3.386 24 O -0.968 6.968 25 O -0.982 6.982 26 C -0.737 4.737 27 H 0.101 0.899 28 H 0.119 0.881 29 H 0.153 0.847 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.251 0.749 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.085 0.915 37 H 0.192 0.808 38 H 0.174 0.826 39 H 0.201 0.799 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 12.432 -12.909 4.889 18.577 hybrid contribution -0.308 0.884 -0.827 1.249 sum 12.124 -12.025 4.063 17.552 Atomic orbital electron populations 1.69612 1.09419 1.31114 1.38082 1.27027 0.95579 1.04291 0.91008 0.85507 0.79155 0.76091 0.80231 1.17211 1.21122 1.17355 1.19709 0.91638 0.94817 1.41029 0.91785 1.17820 0.92768 0.90915 0.88872 1.21296 0.96024 1.05065 1.04232 1.21262 0.92634 0.97185 0.97052 1.20977 1.00121 1.00357 1.03133 1.21274 0.91835 0.96921 0.95843 1.19856 0.94430 1.06543 1.05950 1.18538 0.86222 0.80627 0.79993 1.90793 1.16637 1.72810 1.64737 1.45728 1.11787 1.33040 1.46650 1.20522 0.94143 0.90615 0.89844 0.91493 1.22155 1.01544 0.95962 0.99276 1.21239 0.97719 0.98950 0.97026 1.30061 1.13149 1.14585 1.13072 1.07519 0.75482 0.77837 0.77765 1.93559 1.61020 1.74579 1.67642 1.93560 1.59017 1.72365 1.73302 1.30587 1.11779 1.17249 1.14100 0.89852 0.88093 0.84679 0.83691 0.83704 0.74924 0.92337 0.86752 0.87071 0.91546 0.80790 0.82646 0.79939 0.83555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.29 13.92 21.88 0.30 -49.99 16 2 C 0.03 1.92 5.50 85.37 0.47 2.39 16 3 Si 0.97 43.98 24.48 68.60 1.68 45.66 16 4 H -0.25 -10.21 6.70 99.48 0.67 -9.55 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.25 -11.38 6.68 99.48 0.66 -10.71 16 7 C -0.44 -26.22 8.08 23.41 0.19 -26.03 16 8 H 0.06 4.31 6.36 -2.91 -0.02 4.29 16 9 C 0.10 5.11 5.04 -21.11 -0.11 5.00 16 10 C -0.25 -11.04 6.94 22.72 0.16 -10.88 16 11 C -0.06 -2.24 10.01 22.26 0.22 -2.02 16 12 C -0.23 -7.06 10.03 22.41 0.22 -6.83 16 13 C -0.04 -1.32 9.52 22.50 0.21 -1.11 16 14 C -0.26 -11.54 5.92 -19.70 -0.12 -11.66 16 15 C 0.55 23.99 7.63 86.66 0.66 24.65 16 16 O -0.57 -30.99 13.33 -4.07 -0.05 -31.04 16 17 N -0.72 -20.78 5.02 -446.37 -2.24 -23.02 16 18 C 0.15 3.84 2.28 44.87 0.10 3.94 16 19 H 0.07 2.20 7.44 -2.39 -0.02 2.18 16 20 C -0.15 -3.06 5.19 30.32 0.16 -2.91 16 21 C -0.11 -1.79 5.73 30.47 0.17 -1.62 16 22 C -0.58 -5.88 6.35 72.00 0.46 -5.43 16 23 S 2.43 43.04 5.30 -56.49 -0.30 42.74 16 24 O -0.97 -21.94 18.10 -127.38 -2.31 -24.25 16 25 O -0.99 -28.27 17.95 -127.38 -2.29 -30.55 16 26 C -0.61 -9.11 5.81 72.00 0.42 -8.69 16 27 H 0.29 15.39 8.29 -92.71 -0.77 14.62 16 28 H 0.10 4.53 4.88 -2.91 -0.01 4.51 16 29 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 30 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 31 H 0.15 3.27 6.42 -2.91 -0.02 3.25 16 32 H 0.41 8.50 6.65 -92.71 -0.62 7.88 16 33 H 0.06 1.66 8.08 -2.39 -0.02 1.64 16 34 H 0.11 1.36 8.09 -2.39 -0.02 1.34 16 35 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.40 8.01 -2.39 -0.02 1.38 16 37 H 0.17 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.18 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -87.82 333.70 -1.60 -89.41 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.38 Total: 22.22 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 3.23 Total: -41.18 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -1.94 Total: -73.01 kcal Atomic # 8 Polarization: -81.19 SS G_CDS: -4.65 Total: -85.84 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.68 Total: 45.66 kcal Atomic # 16 Polarization: 43.04 SS G_CDS: -0.30 Total: 42.74 kcal Total: -87.82 -1.60 -89.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601152650.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.826 kcal (2) G-P(sol) polarization free energy of solvation -87.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds