Wall clock time and date at job start Sat Apr 11 2020 00:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99455 * 2 1 4 4 H 1.48502 * 109.47105 * 269.99636 * 3 2 1 5 5 H 1.48498 * 109.47057 * 30.00033 * 3 2 1 6 6 H 1.48503 * 109.46745 * 150.00015 * 3 2 1 7 7 C 1.37877 * 120.00499 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47141 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.46751 * 55.00458 * 10 9 7 12 12 N 1.46499 * 109.47481 * 295.00678 * 10 9 7 13 13 C 1.34777 * 120.00199 * 154.99940 * 12 10 9 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 10 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 10 16 16 S 1.81396 * 109.46989 * 179.72353 * 15 13 12 17 17 C 1.81397 * 102.99966 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.47440 * 179.97438 * 17 16 15 19 19 O 1.20833 * 119.99463 * 359.97438 * 18 17 16 20 20 O 1.34221 * 120.00280 * 179.97438 * 18 17 16 21 21 C 1.50700 * 109.47071 * 175.00009 * 10 9 7 22 22 C 1.38235 * 119.99909 * 79.73572 * 21 10 9 23 23 C 1.38235 * 120.00203 * 179.78500 * 22 21 10 24 24 C 1.38243 * 119.99736 * 0.43880 * 23 22 21 25 25 C 1.38244 * 119.99802 * 359.81374 * 24 23 22 26 26 C 1.38234 * 120.00041 * 359.97438 * 25 24 23 27 27 H 0.96993 * 120.00753 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46966 * 59.99935 * 9 7 2 29 29 H 1.08995 * 109.47763 * 300.00102 * 9 7 2 30 30 H 0.97000 * 119.99484 * 334.99037 * 12 10 9 31 31 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 32 32 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 33 33 H 1.09007 * 109.47210 * 299.99795 * 17 16 15 34 34 H 1.08994 * 109.47231 * 59.99692 * 17 16 15 35 35 H 0.96696 * 117.00249 * 179.97438 * 20 18 17 36 36 H 1.08003 * 119.99755 * 359.97438 * 22 21 10 37 37 H 1.07999 * 120.00430 * 180.26737 * 23 22 21 38 38 H 1.07994 * 120.00105 * 179.82908 * 24 23 22 39 39 H 1.07997 * 119.99648 * 180.02562 * 25 24 23 40 40 H 1.07994 * 119.99956 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 1 2.9295 -3.5551 0.8424 12 7 3.0066 -3.6538 -1.2512 13 6 4.2313 -4.2144 -1.2988 14 8 4.7035 -4.7252 -0.3053 15 6 5.0169 -4.2004 -2.5849 16 16 6.6152 -5.0182 -2.3260 17 6 7.4010 -4.9038 -3.9569 18 6 8.7617 -5.5496 -3.9054 19 8 9.1606 -6.0366 -2.8740 20 8 9.5304 -5.5838 -5.0051 21 6 1.4961 -4.9636 0.1244 22 6 0.8899 -5.5204 -0.9862 23 6 0.2062 -6.7166 -0.8736 24 6 0.1212 -7.3514 0.3515 25 6 0.7230 -6.7919 1.4632 26 6 1.4104 -5.5979 1.3496 27 1 -0.4851 0.8399 -0.0004 28 1 0.6249 -2.5570 -0.8897 29 1 0.6242 -2.5568 0.8902 30 1 2.6291 -3.2450 -2.0457 31 1 4.4588 -4.7298 -3.3572 32 1 5.1825 -3.1697 -2.8982 33 1 6.7831 -5.4158 -4.6946 34 1 7.5071 -3.8556 -4.2364 35 1 10.3954 -6.0082 -4.9232 36 1 0.9529 -5.0224 -1.9425 37 1 -0.2637 -7.1539 -1.7421 38 1 -0.4152 -8.2845 0.4401 39 1 0.6569 -7.2880 2.4202 40 1 1.8809 -5.1610 2.2180 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601993358.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:56:58 Heat of formation + Delta-G solvation = -104.519587 kcal Electronic energy + Delta-G solvation = -23926.568481 eV Core-core repulsion = 20218.435603 eV Total energy + Delta-G solvation = -3708.132878 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.45853 -39.67274 -38.40943 -36.47689 -35.25888 -32.81647 -31.61098 -30.78586 -30.49749 -29.52979 -28.53138 -24.87671 -22.48192 -22.32413 -21.98496 -20.68007 -19.78812 -18.47985 -17.41698 -16.85635 -16.60811 -16.48024 -16.21657 -16.09935 -15.42002 -15.18517 -14.72265 -14.57656 -14.02067 -13.66464 -13.53703 -13.42245 -13.11299 -12.98301 -12.83016 -12.56725 -12.27636 -12.13310 -11.87198 -11.57434 -11.17658 -10.98625 -10.95262 -10.76307 -10.63765 -10.50098 -10.08135 -9.82689 -9.59825 -9.33518 -8.59525 -8.50643 -8.49197 -8.20866 -7.74848 -6.13237 -4.17153 1.02080 1.76258 1.78959 1.83517 2.26211 2.73398 2.94420 3.23362 3.31780 3.35907 3.61829 4.21462 4.36277 4.56248 4.75983 4.90047 4.96241 4.98808 5.20933 5.23960 5.25502 5.26472 5.36596 5.52151 5.88515 5.92166 6.10354 6.13077 6.32998 6.40875 6.53990 6.80803 6.82678 6.84583 7.07315 7.38721 7.44424 7.49934 7.56373 7.83189 7.97834 8.21032 8.60991 8.88922 9.48305 10.97194 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.008517 B = 0.003822 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3286.655581 B = 7324.543391 C =10014.644239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.186 3.814 11 H 0.089 0.911 12 N -0.694 5.694 13 C 0.529 3.471 14 O -0.528 6.528 15 C -0.145 4.145 16 S -0.100 6.100 17 C -0.130 4.130 18 C 0.498 3.502 19 O -0.490 6.490 20 O -0.514 6.514 21 C -0.072 4.072 22 C -0.108 4.108 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.122 4.122 26 C -0.107 4.107 27 H 0.262 0.738 28 H 0.025 0.975 29 H 0.035 0.965 30 H 0.402 0.598 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.415 0.585 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.503 -11.421 -10.523 17.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.013 4.013 10 C 0.082 3.918 11 H 0.107 0.893 12 N -0.344 5.344 13 C 0.312 3.688 14 O -0.405 6.405 15 C -0.296 4.296 16 S 0.124 5.876 17 C -0.279 4.279 18 C 0.338 3.662 19 O -0.376 6.376 20 O -0.327 6.327 21 C -0.074 4.074 22 C -0.127 4.127 23 C -0.143 4.143 24 C -0.152 4.152 25 C -0.140 4.140 26 C -0.126 4.126 27 H 0.072 0.928 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.237 0.763 31 H 0.128 0.872 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.274 0.726 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.810 -12.052 -8.623 17.240 hybrid contribution 0.158 1.555 -1.638 2.264 sum 8.968 -10.498 -10.261 17.202 Atomic orbital electron populations 1.69951 1.06034 1.26881 1.50147 1.24988 0.94790 0.99245 0.95073 0.86600 0.79987 0.83397 0.78097 1.20695 1.21181 1.19780 1.21136 0.93102 0.90372 1.51426 0.92341 1.19394 0.93175 0.90068 0.98670 1.20287 0.93368 0.92066 0.86112 0.89348 1.45867 1.16365 1.57582 1.14611 1.19414 0.82014 0.78998 0.88397 1.90731 1.68958 1.45000 1.35777 1.23689 0.98320 1.05834 1.01781 1.88299 1.14515 1.76597 1.08171 1.23172 0.94507 1.05898 1.04305 1.22239 0.86267 0.76759 0.80932 1.90809 1.72715 1.42503 1.31614 1.84475 1.33325 1.75291 1.39624 1.20525 0.96918 0.96500 0.93415 1.20890 0.97710 0.95617 0.98450 1.21039 0.99949 0.95967 0.97366 1.21007 1.00980 1.00026 0.93218 1.21053 0.98473 0.96154 0.98336 1.21027 0.99022 0.95077 0.97443 0.92817 0.95703 0.94636 0.76332 0.87207 0.86827 0.85973 0.85881 0.72556 0.86608 0.86733 0.86814 0.86559 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -13.45 8.84 -34.44 -0.30 -13.76 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.56 4.49 -27.88 -0.13 0.44 16 10 C 0.19 3.66 2.11 -69.08 -0.15 3.52 16 11 H 0.09 1.93 7.44 -51.93 -0.39 1.55 16 12 N -0.69 -11.73 4.04 -54.93 -0.22 -11.95 16 13 C 0.53 8.88 7.81 -10.98 -0.09 8.79 16 14 O -0.53 -11.01 15.53 5.55 0.09 -10.93 16 15 C -0.14 -1.73 6.42 36.01 0.23 -1.49 16 16 S -0.10 -1.35 20.01 -107.50 -2.15 -3.51 16 17 C -0.13 -1.12 6.54 36.01 0.24 -0.88 16 18 C 0.50 4.94 8.35 36.01 0.30 5.24 16 19 O -0.49 -6.84 16.62 -18.76 -0.31 -7.16 16 20 O -0.51 -3.45 13.42 -39.23 -0.53 -3.98 16 21 C -0.07 -1.31 4.91 -104.62 -0.51 -1.83 16 22 C -0.11 -1.76 9.32 -39.58 -0.37 -2.13 16 23 C -0.13 -1.81 10.05 -39.58 -0.40 -2.21 16 24 C -0.13 -1.89 10.05 -39.58 -0.40 -2.29 16 25 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 26 C -0.11 -1.85 9.67 -39.58 -0.38 -2.24 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.40 5.99 8.60 -40.82 -0.35 5.64 16 31 H 0.11 0.98 8.14 -51.92 -0.42 0.55 16 32 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.12 0.75 8.14 -51.92 -0.42 0.32 16 34 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.41 1.09 9.10 45.56 0.41 1.50 16 36 H 0.12 1.72 7.73 -52.48 -0.41 1.31 16 37 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 38 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 39 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 40 H 0.12 2.01 8.04 -52.49 -0.42 1.59 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -34.76 367.82 -8.81 -43.58 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -4.50 Total: 6.72 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -2.45 Total: -9.54 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.51 Total: -36.32 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.75 Total: -22.06 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -2.15 Total: -3.51 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.76 -8.81 -43.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601993358.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.942 kcal (2) G-P(sol) polarization free energy of solvation -34.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds