Wall clock time and date at job start Sat Apr 11 2020 00:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99455 * 2 1 4 4 H 1.48502 * 109.47105 * 269.99636 * 3 2 1 5 5 H 1.48498 * 109.47057 * 30.00033 * 3 2 1 6 6 H 1.48503 * 109.46745 * 150.00015 * 3 2 1 7 7 C 1.37877 * 120.00499 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47141 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.46751 * 55.00458 * 10 9 7 12 12 N 1.46499 * 109.47481 * 295.00678 * 10 9 7 13 13 C 1.34777 * 120.00199 * 154.99940 * 12 10 9 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 10 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 10 16 16 S 1.81396 * 109.46989 * 179.72353 * 15 13 12 17 17 C 1.81397 * 102.99966 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.47440 * 179.97438 * 17 16 15 19 19 O 1.20833 * 119.99463 * 359.97438 * 18 17 16 20 20 O 1.34221 * 120.00280 * 179.97438 * 18 17 16 21 21 C 1.50700 * 109.47071 * 175.00009 * 10 9 7 22 22 C 1.38235 * 119.99909 * 79.73572 * 21 10 9 23 23 C 1.38235 * 120.00203 * 179.78500 * 22 21 10 24 24 C 1.38243 * 119.99736 * 0.43880 * 23 22 21 25 25 C 1.38244 * 119.99802 * 359.81374 * 24 23 22 26 26 C 1.38234 * 120.00041 * 359.97438 * 25 24 23 27 27 H 0.96993 * 120.00753 * 0.02562 * 1 2 3 28 28 H 1.09006 * 109.46966 * 59.99935 * 9 7 2 29 29 H 1.08995 * 109.47763 * 300.00102 * 9 7 2 30 30 H 0.97000 * 119.99484 * 334.99037 * 12 10 9 31 31 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 32 32 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 33 33 H 1.09007 * 109.47210 * 299.99795 * 17 16 15 34 34 H 1.08994 * 109.47231 * 59.99692 * 17 16 15 35 35 H 0.96696 * 117.00249 * 179.97438 * 20 18 17 36 36 H 1.08003 * 119.99755 * 359.97438 * 22 21 10 37 37 H 1.07999 * 120.00430 * 180.26737 * 23 22 21 38 38 H 1.07994 * 120.00105 * 179.82908 * 24 23 22 39 39 H 1.07997 * 119.99648 * 180.02562 * 25 24 23 40 40 H 1.07994 * 119.99956 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 1 2.9295 -3.5551 0.8424 12 7 3.0066 -3.6538 -1.2512 13 6 4.2313 -4.2144 -1.2988 14 8 4.7035 -4.7252 -0.3053 15 6 5.0169 -4.2004 -2.5849 16 16 6.6152 -5.0182 -2.3260 17 6 7.4010 -4.9038 -3.9569 18 6 8.7617 -5.5496 -3.9054 19 8 9.1606 -6.0366 -2.8740 20 8 9.5304 -5.5838 -5.0051 21 6 1.4961 -4.9636 0.1244 22 6 0.8899 -5.5204 -0.9862 23 6 0.2062 -6.7166 -0.8736 24 6 0.1212 -7.3514 0.3515 25 6 0.7230 -6.7919 1.4632 26 6 1.4104 -5.5979 1.3496 27 1 -0.4851 0.8399 -0.0004 28 1 0.6249 -2.5570 -0.8897 29 1 0.6242 -2.5568 0.8902 30 1 2.6291 -3.2450 -2.0457 31 1 4.4588 -4.7298 -3.3572 32 1 5.1825 -3.1697 -2.8982 33 1 6.7831 -5.4158 -4.6946 34 1 7.5071 -3.8556 -4.2364 35 1 10.3954 -6.0082 -4.9232 36 1 0.9529 -5.0224 -1.9425 37 1 -0.2637 -7.1539 -1.7421 38 1 -0.4152 -8.2845 0.4401 39 1 0.6569 -7.2880 2.4202 40 1 1.8809 -5.1610 2.2180 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601993358.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:56:57 Heat of formation + Delta-G solvation = -127.713130 kcal Electronic energy + Delta-G solvation = -23927.574228 eV Core-core repulsion = 20218.435603 eV Total energy + Delta-G solvation = -3709.138625 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.21473 -41.02859 -39.68338 -37.17308 -36.80861 -34.73316 -32.97497 -31.72199 -31.50992 -30.75092 -30.10914 -26.60652 -23.79913 -23.42896 -23.16564 -22.02097 -21.18887 -19.18989 -18.77247 -18.30254 -17.82101 -17.62493 -17.21741 -17.09503 -16.69364 -16.47081 -16.34402 -15.91991 -15.30303 -14.77482 -14.59356 -14.32741 -14.21294 -14.18333 -14.08573 -13.99448 -13.63040 -13.42121 -13.33159 -12.91610 -12.60890 -12.60454 -12.46306 -12.13887 -11.87048 -11.80071 -11.59145 -11.32997 -11.00435 -10.94253 -10.56863 -10.01834 -9.74654 -9.51589 -8.75004 -8.19600 -6.29885 0.15314 0.52405 0.56944 1.11144 1.39745 1.40794 1.43057 1.52769 1.65624 2.10285 2.33614 2.40787 2.98180 3.14807 3.78289 3.99623 4.03222 4.04376 4.14427 4.19869 4.22028 4.31797 4.33230 4.34846 4.46510 4.66194 4.76795 4.79536 5.13276 5.20962 5.27461 5.43873 5.54264 5.60430 5.61894 5.65171 5.78641 5.90300 6.16694 6.21228 6.64311 6.83150 6.90740 7.30757 7.39535 8.91034 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.008517 B = 0.003822 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3286.655581 B = 7324.543391 C =10014.644239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.054 0.946 9 C 0.039 3.961 10 C 0.202 3.798 11 H 0.055 0.945 12 N -0.689 5.689 13 C 0.522 3.478 14 O -0.575 6.575 15 C -0.120 4.120 16 S -0.192 6.192 17 C -0.108 4.108 18 C 0.502 3.498 19 O -0.541 6.541 20 O -0.502 6.502 21 C -0.098 4.098 22 C -0.119 4.119 23 C -0.124 4.124 24 C -0.130 4.130 25 C -0.126 4.126 26 C -0.135 4.135 27 H 0.264 0.736 28 H 0.016 0.984 29 H 0.001 0.999 30 H 0.413 0.587 31 H 0.148 0.852 32 H 0.140 0.860 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.433 0.567 36 H 0.127 0.873 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.141 0.859 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.597 -12.005 -13.362 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.568 4.568 8 H 0.073 0.927 9 C 0.001 3.999 10 C 0.097 3.903 11 H 0.073 0.927 12 N -0.340 5.340 13 C 0.308 3.692 14 O -0.454 6.454 15 C -0.271 4.271 16 S 0.033 5.967 17 C -0.256 4.256 18 C 0.344 3.656 19 O -0.431 6.431 20 O -0.316 6.316 21 C -0.099 4.099 22 C -0.137 4.137 23 C -0.142 4.142 24 C -0.148 4.148 25 C -0.144 4.144 26 C -0.154 4.154 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.020 0.980 30 H 0.249 0.751 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.174 0.826 34 H 0.170 0.830 35 H 0.296 0.704 36 H 0.145 0.855 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.159 0.841 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.920 -12.632 -11.517 19.281 hybrid contribution 0.156 1.660 -0.787 1.844 sum 9.076 -10.972 -12.304 18.818 Atomic orbital electron populations 1.70064 1.07476 1.27748 1.51297 1.25764 0.95529 1.02616 0.94772 0.85594 0.78405 0.79241 0.78675 1.19115 1.21197 1.19874 1.21403 0.93038 0.91545 1.50768 0.92730 1.19125 0.93222 0.90999 0.96507 1.19710 0.92118 0.92015 0.86496 0.92688 1.45720 1.16613 1.57786 1.13848 1.20218 0.81603 0.77622 0.89741 1.90714 1.69848 1.46824 1.38062 1.23530 0.96595 1.07659 0.99311 1.88661 1.16843 1.77381 1.13817 1.23148 0.93632 1.07995 1.00855 1.22496 0.86752 0.75669 0.80637 1.90806 1.73878 1.44865 1.33542 1.84436 1.34295 1.74964 1.37902 1.20439 0.98451 0.96298 0.94745 1.21095 0.97898 0.96593 0.98156 1.21461 0.98870 0.94987 0.98854 1.21477 0.99903 1.00935 0.92482 1.21378 0.97641 0.95174 1.00163 1.21177 1.00481 0.96675 0.97081 0.92723 0.96557 0.98032 0.75068 0.83376 0.84235 0.82640 0.83034 0.70436 0.85527 0.83380 0.83204 0.84122 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.07 13.29 21.45 0.28 -52.78 16 2 C 0.01 0.65 5.46 84.65 0.46 1.11 16 3 Si 0.96 42.44 29.54 68.60 2.03 44.47 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.53 -28.00 8.84 25.60 0.23 -27.78 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 9 C 0.04 1.90 4.49 29.85 0.13 2.03 16 10 C 0.20 8.39 2.11 44.25 0.09 8.48 16 11 H 0.05 2.62 7.44 -2.39 -0.02 2.60 16 12 N -0.69 -23.54 4.04 -446.09 -1.80 -25.34 16 13 C 0.52 17.60 7.81 87.66 0.68 18.28 16 14 O -0.57 -25.01 15.53 -3.04 -0.05 -25.05 16 15 C -0.12 -2.62 6.42 71.24 0.46 -2.16 16 16 S -0.19 -5.04 20.01 -56.49 -1.13 -6.17 16 17 C -0.11 -1.52 6.54 71.24 0.47 -1.06 16 18 C 0.50 9.02 8.35 71.24 0.59 9.62 16 19 O -0.54 -15.04 16.62 21.94 0.36 -14.68 16 20 O -0.50 -5.35 13.42 -51.33 -0.69 -6.04 16 21 C -0.10 -3.69 4.91 -19.87 -0.10 -3.79 16 22 C -0.12 -3.80 9.32 22.27 0.21 -3.59 16 23 C -0.12 -3.29 10.05 22.27 0.22 -3.06 16 24 C -0.13 -3.33 10.05 22.27 0.22 -3.10 16 25 C -0.13 -3.68 10.05 22.27 0.22 -3.45 16 26 C -0.14 -4.90 9.67 22.27 0.22 -4.69 16 27 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.41 12.06 8.60 -92.71 -0.80 11.26 16 31 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.16 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.15 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.43 1.27 9.10 -74.06 -0.67 0.60 16 36 H 0.13 3.62 7.73 -2.91 -0.02 3.60 16 37 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 38 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 39 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 40 H 0.11 4.01 8.04 -2.91 -0.02 3.99 16 Total: -1.00 -80.24 367.82 2.73 -77.52 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -0.39 Total: 21.23 kcal Atomic # 6 Polarization: -17.27 SS G_CDS: 4.11 Total: -13.16 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -1.52 Total: -78.12 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -0.37 Total: -45.77 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: -5.04 SS G_CDS: -1.13 Total: -6.17 kcal Total: -80.24 2.73 -77.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601993358.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.195 kcal (2) G-P(sol) polarization free energy of solvation -80.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds