Wall clock time and date at job start Sat Apr 11 2020 00:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00046 * 2 1 4 4 H 1.48493 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46684 * 300.00051 * 3 2 1 6 6 H 1.48498 * 109.47357 * 59.99797 * 3 2 1 7 7 C 1.37876 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00505 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99627 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46896 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.46846 * 184.92955 * 10 9 7 12 12 C 1.34778 * 119.99578 * 184.98984 * 11 10 9 13 13 O 1.21282 * 120.00004 * 355.01195 * 12 11 10 14 14 C 1.50699 * 120.00000 * 175.00391 * 12 11 10 15 15 S 1.81405 * 115.54790 * 46.55835 * 14 12 11 16 16 O 1.42103 * 110.54168 * 288.53420 * 15 14 12 17 17 O 1.42094 * 110.54602 * 151.78072 * 15 14 12 18 18 C 1.76200 * 104.45057 * 40.15456 * 15 14 12 19 19 C 1.38240 * 119.99773 * 84.21702 * 18 15 14 20 20 C 1.38238 * 120.00043 * 180.02562 * 19 18 15 21 21 C 1.38228 * 119.99644 * 359.96151 * 20 19 18 22 22 C 1.38236 * 120.00410 * 359.97438 * 21 20 19 23 23 C 1.38228 * 120.00530 * 264.24716 * 18 15 14 24 24 C 1.52996 * 117.51939 * 192.25320 * 14 12 11 25 25 C 1.53002 * 117.50221 * 260.88703 * 14 12 11 26 26 H 0.96994 * 120.00047 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47063 * 60.00221 * 9 7 2 28 28 H 1.08991 * 109.47675 * 300.00212 * 9 7 2 29 29 H 1.09003 * 109.46597 * 64.93538 * 10 9 7 30 30 H 1.08994 * 109.47345 * 304.93203 * 10 9 7 31 31 H 0.96995 * 120.00466 * 4.99392 * 11 10 9 32 32 H 1.08006 * 119.99772 * 0.02562 * 19 18 15 33 33 H 1.07999 * 119.99522 * 179.97438 * 20 19 18 34 34 H 1.08004 * 119.99412 * 179.71959 * 21 20 19 35 35 H 1.08006 * 119.99868 * 179.97438 * 22 21 20 36 36 H 1.08002 * 120.00121 * 359.97438 * 23 18 15 37 37 H 1.08999 * 117.50098 * 214.96933 * 24 14 12 38 38 H 1.08998 * 117.50226 * 0.02562 * 24 14 12 39 39 H 1.08998 * 117.49434 * 359.97435 * 25 14 12 40 40 H 1.08994 * 117.49399 * 144.97380 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 7 1.5165 -4.9275 -0.1161 12 6 2.1807 -6.0976 -0.0362 13 8 3.3910 -6.1037 0.0420 14 6 1.4196 -7.3982 -0.0440 15 16 0.1321 -7.5436 -1.3137 16 8 -0.9726 -6.7059 -1.0019 17 8 -0.0595 -8.9042 -1.6760 18 6 0.8439 -6.8080 -2.7479 19 6 1.6637 -7.5549 -3.5732 20 6 2.2226 -6.9777 -4.6981 21 6 1.9610 -5.6540 -4.9981 22 6 1.1401 -4.9075 -4.1736 23 6 0.5830 -5.4841 -3.0475 24 6 2.1852 -8.6676 0.3343 25 6 1.1616 -8.0739 1.3043 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5575 -0.8880 28 1 0.6247 -2.5563 0.8918 29 1 2.8130 -3.6549 0.9319 30 1 2.9280 -3.5563 -0.8416 31 1 0.5560 -4.9234 -0.2515 32 1 1.8676 -8.5894 -3.3390 33 1 2.8634 -7.5611 -5.3426 34 1 2.4013 -5.2018 -5.8746 35 1 0.9360 -3.8731 -4.4079 36 1 -0.0574 -4.9005 -2.4028 37 1 1.9153 -9.5901 -0.1796 38 1 3.2397 -8.5622 0.5893 39 1 1.5429 -7.5779 2.1968 40 1 0.2182 -8.6055 1.4284 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612059999.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:57:01 Heat of formation + Delta-G solvation = -54.886378 kcal Electronic energy + Delta-G solvation = -25625.662318 eV Core-core repulsion = 21919.681697 eV Total energy + Delta-G solvation = -3705.980620 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.89478 -39.12845 -37.50465 -36.56428 -36.16398 -34.96468 -32.92599 -31.43144 -31.08765 -29.85691 -25.92616 -24.01498 -23.20612 -22.92353 -22.79008 -21.11361 -20.78285 -19.05424 -18.47547 -17.57848 -16.51296 -16.30626 -16.07057 -15.86791 -15.37414 -14.85756 -14.74065 -14.63371 -14.58622 -14.33174 -13.69728 -13.53109 -13.16037 -13.03704 -12.40804 -12.36304 -12.35711 -12.21208 -12.05742 -11.89112 -11.38136 -11.33938 -11.24871 -11.09759 -11.01171 -10.68609 -10.61283 -10.42127 -9.96429 -9.60182 -9.48213 -9.28048 -9.09620 -8.69797 -8.43923 -6.12440 -4.16022 -0.21333 0.75055 1.24701 2.27572 2.77561 3.02487 3.25260 3.27191 3.33165 3.35966 3.40154 3.70885 3.93063 4.19364 4.37413 4.41485 4.63415 4.73490 4.80687 4.90873 5.11536 5.18943 5.23686 5.24696 5.35008 5.48464 5.60212 5.70582 5.84426 5.98012 6.15389 6.19394 6.24970 6.30127 6.60800 6.70544 6.75493 7.45621 7.56049 7.75253 7.85122 8.19802 8.35553 8.89818 9.49034 10.98933 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.014040 B = 0.004252 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.868102 B = 6583.520523 C = 7434.442908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.010 3.990 10 C 0.122 3.878 11 N -0.719 5.719 12 C 0.564 3.436 13 O -0.526 6.526 14 C -0.676 4.676 15 S 2.533 3.467 16 O -0.922 6.922 17 O -0.928 6.928 18 C -0.660 4.660 19 C -0.020 4.020 20 C -0.144 4.144 21 C -0.062 4.062 22 C -0.132 4.132 23 C -0.010 4.010 24 C -0.095 4.095 25 C -0.102 4.102 26 H 0.262 0.738 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.401 0.599 32 H 0.137 0.863 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.540 -17.810 -5.257 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.078 0.922 9 C -0.027 4.027 10 C 0.001 3.999 11 N -0.370 5.370 12 C 0.346 3.654 13 O -0.403 6.403 14 C -0.766 4.766 15 S 2.711 3.289 16 O -0.919 6.919 17 O -0.926 6.926 18 C -0.749 4.749 19 C -0.039 4.039 20 C -0.163 4.163 21 C -0.080 4.080 22 C -0.151 4.151 23 C -0.029 4.029 24 C -0.133 4.133 25 C -0.141 4.141 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.236 0.764 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.459 -18.006 -5.094 18.770 hybrid contribution 0.697 1.574 -0.323 1.751 sum 2.156 -16.432 -5.417 17.436 Atomic orbital electron populations 1.69964 1.06046 1.26834 1.50113 1.24984 0.94867 0.99352 0.94963 0.86479 0.80121 0.83422 0.77663 1.19640 1.20932 1.20909 1.21041 0.93194 0.90235 1.51602 0.92223 1.19366 0.94166 0.90923 0.98238 1.21843 0.96186 0.80895 1.00990 1.46487 1.12120 1.06385 1.72057 1.18199 0.87183 0.82449 0.77566 1.90666 1.13151 1.86684 1.49781 1.31966 1.22934 1.03285 1.18464 1.04323 0.74830 0.74789 0.74947 1.93601 1.45818 1.68323 1.84133 1.93558 1.83993 1.33547 1.81457 1.30263 1.17146 1.06096 1.21396 1.20832 0.91304 0.98887 0.92860 1.21237 1.01285 0.95749 0.98008 1.21528 0.94390 0.93970 0.98124 1.21389 0.97855 1.00829 0.95010 1.21050 0.94099 0.91846 0.95894 1.23027 1.00156 0.90639 0.99432 1.22961 1.02067 0.98962 0.90061 0.92817 0.95701 0.95641 0.92106 0.92171 0.76410 0.84554 0.85132 0.85192 0.84432 0.83837 0.85694 0.85582 0.85956 0.86536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.10 9.11 -34.44 -0.31 -14.41 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.01 0.25 5.09 -27.88 -0.14 0.11 16 10 C 0.12 2.53 5.62 -4.04 -0.02 2.50 16 11 N -0.72 -12.67 4.89 -60.29 -0.29 -12.96 16 12 C 0.56 9.33 6.60 -10.99 -0.07 9.26 16 13 O -0.53 -10.20 16.34 5.56 0.09 -10.11 16 14 C -0.68 -8.58 2.61 -91.77 -0.24 -8.82 16 15 S 2.53 33.88 5.01 -107.50 -0.54 33.35 16 16 O -0.92 -14.38 16.02 -57.54 -0.92 -15.31 16 17 O -0.93 -12.93 16.61 -57.54 -0.96 -13.89 16 18 C -0.66 -9.13 5.00 -39.58 -0.20 -9.32 16 19 C -0.02 -0.24 9.47 -39.58 -0.37 -0.62 16 20 C -0.14 -1.57 10.05 -39.59 -0.40 -1.97 16 21 C -0.06 -0.70 10.05 -39.59 -0.40 -1.09 16 22 C -0.13 -1.73 10.05 -39.59 -0.40 -2.13 16 23 C -0.01 -0.14 8.77 -39.59 -0.35 -0.49 16 24 C -0.09 -0.92 9.68 -26.73 -0.26 -1.18 16 25 C -0.10 -0.98 10.00 -26.73 -0.27 -1.25 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.40 6.67 6.50 -40.82 -0.27 6.40 16 32 H 0.14 1.35 7.72 -52.48 -0.41 0.95 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 34 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 35 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 36 H 0.14 2.11 6.85 -52.49 -0.36 1.75 16 37 H 0.12 0.95 7.68 -51.93 -0.40 0.55 16 38 H 0.13 1.26 7.73 -51.93 -0.40 0.86 16 39 H 0.12 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 356.13 15.07 5.37 5.37 Total: -1.00 -34.12 356.13 -10.24 -44.36 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -5.18 Total: 5.96 kcal Atomic # 6 Polarization: -24.32 SS G_CDS: -3.53 Total: -27.85 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.44 Total: -37.85 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -1.79 Total: -39.30 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 33.88 SS G_CDS: -0.54 Total: 33.35 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.12 -10.24 -44.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612059999.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.528 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds