Wall clock time and date at job start Sat Apr 11 2020 00:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00046 * 2 1 4 4 H 1.48493 * 109.47038 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46684 * 300.00051 * 3 2 1 6 6 H 1.48498 * 109.47357 * 59.99797 * 3 2 1 7 7 C 1.37876 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00505 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99627 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46896 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.46846 * 184.92955 * 10 9 7 12 12 C 1.34778 * 119.99578 * 184.98984 * 11 10 9 13 13 O 1.21282 * 120.00004 * 355.01195 * 12 11 10 14 14 C 1.50699 * 120.00000 * 175.00391 * 12 11 10 15 15 S 1.81405 * 115.54790 * 46.55835 * 14 12 11 16 16 O 1.42103 * 110.54168 * 288.53420 * 15 14 12 17 17 O 1.42094 * 110.54602 * 151.78072 * 15 14 12 18 18 C 1.76200 * 104.45057 * 40.15456 * 15 14 12 19 19 C 1.38240 * 119.99773 * 84.21702 * 18 15 14 20 20 C 1.38238 * 120.00043 * 180.02562 * 19 18 15 21 21 C 1.38228 * 119.99644 * 359.96151 * 20 19 18 22 22 C 1.38236 * 120.00410 * 359.97438 * 21 20 19 23 23 C 1.38228 * 120.00530 * 264.24716 * 18 15 14 24 24 C 1.52996 * 117.51939 * 192.25320 * 14 12 11 25 25 C 1.53002 * 117.50221 * 260.88703 * 14 12 11 26 26 H 0.96994 * 120.00047 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47063 * 60.00221 * 9 7 2 28 28 H 1.08991 * 109.47675 * 300.00212 * 9 7 2 29 29 H 1.09003 * 109.46597 * 64.93538 * 10 9 7 30 30 H 1.08994 * 109.47345 * 304.93203 * 10 9 7 31 31 H 0.96995 * 120.00466 * 4.99392 * 11 10 9 32 32 H 1.08006 * 119.99772 * 0.02562 * 19 18 15 33 33 H 1.07999 * 119.99522 * 179.97438 * 20 19 18 34 34 H 1.08004 * 119.99412 * 179.71959 * 21 20 19 35 35 H 1.08006 * 119.99868 * 179.97438 * 22 21 20 36 36 H 1.08002 * 120.00121 * 359.97438 * 23 18 15 37 37 H 1.08999 * 117.50098 * 214.96933 * 24 14 12 38 38 H 1.08998 * 117.50226 * 0.02562 * 24 14 12 39 39 H 1.08998 * 117.49434 * 359.97435 * 25 14 12 40 40 H 1.08994 * 117.49399 * 144.97380 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 7 1.5165 -4.9275 -0.1161 12 6 2.1807 -6.0976 -0.0362 13 8 3.3910 -6.1037 0.0420 14 6 1.4196 -7.3982 -0.0440 15 16 0.1321 -7.5436 -1.3137 16 8 -0.9726 -6.7059 -1.0019 17 8 -0.0595 -8.9042 -1.6760 18 6 0.8439 -6.8080 -2.7479 19 6 1.6637 -7.5549 -3.5732 20 6 2.2226 -6.9777 -4.6981 21 6 1.9610 -5.6540 -4.9981 22 6 1.1401 -4.9075 -4.1736 23 6 0.5830 -5.4841 -3.0475 24 6 2.1852 -8.6676 0.3343 25 6 1.1616 -8.0739 1.3043 26 1 -0.4850 0.8400 0.0004 27 1 0.6240 -2.5575 -0.8880 28 1 0.6247 -2.5563 0.8918 29 1 2.8130 -3.6549 0.9319 30 1 2.9280 -3.5563 -0.8416 31 1 0.5560 -4.9234 -0.2515 32 1 1.8676 -8.5894 -3.3390 33 1 2.8634 -7.5611 -5.3426 34 1 2.4013 -5.2018 -5.8746 35 1 0.9360 -3.8731 -4.4079 36 1 -0.0574 -4.9005 -2.4028 37 1 1.9153 -9.5901 -0.1796 38 1 3.2397 -8.5622 0.5893 39 1 1.5429 -7.5779 2.1968 40 1 0.2182 -8.6055 1.4284 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612059999.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:57:00 Heat of formation + Delta-G solvation = -78.156126 kcal Electronic energy + Delta-G solvation = -25626.671370 eV Core-core repulsion = 21919.681697 eV Total energy + Delta-G solvation = -3706.989672 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.18693 -40.06239 -38.59287 -37.64514 -37.27235 -36.58244 -34.87919 -32.39790 -32.02934 -31.68027 -27.53522 -25.50962 -24.19701 -23.81623 -23.62973 -22.87114 -22.07946 -20.18304 -19.59637 -18.72541 -18.41282 -17.39348 -17.08072 -17.01231 -16.73647 -16.48244 -16.30334 -15.78153 -15.54189 -15.50678 -14.97371 -14.70734 -14.52478 -14.32056 -14.02978 -13.47641 -13.35560 -13.31392 -13.25235 -13.07779 -12.98773 -12.66077 -12.55793 -12.37113 -12.26134 -12.24032 -11.97156 -11.68623 -11.56083 -11.45712 -11.05937 -10.62761 -10.42575 -10.20482 -10.03717 -8.24041 -6.35151 -1.24232 -0.21440 0.28945 1.17669 1.40367 1.41527 1.54117 1.64081 1.92738 2.14576 2.34893 2.41603 2.71675 2.93862 3.10814 3.23563 3.48863 3.58765 3.82257 3.89428 4.07287 4.27063 4.35032 4.39539 4.43099 4.45622 4.47445 4.68330 4.76139 4.80052 4.90789 4.97262 5.04116 5.11648 5.24760 5.36502 5.43081 5.54161 5.76299 5.84375 6.12687 6.33041 6.77792 6.95004 7.34393 8.88068 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.014040 B = 0.004252 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.868102 B = 6583.520523 C = 7434.442908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.964 3.036 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.019 3.981 10 C 0.142 3.858 11 N -0.721 5.721 12 C 0.569 3.431 13 O -0.556 6.556 14 C -0.690 4.690 15 S 2.549 3.451 16 O -0.952 6.952 17 O -0.932 6.932 18 C -0.677 4.677 19 C -0.030 4.030 20 C -0.142 4.142 21 C -0.061 4.061 22 C -0.152 4.152 23 C -0.038 4.038 24 C -0.079 4.079 25 C -0.094 4.094 26 H 0.266 0.734 27 H 0.011 0.989 28 H 0.005 0.995 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.405 0.595 32 H 0.160 0.840 33 H 0.167 0.833 34 H 0.161 0.839 35 H 0.139 0.861 36 H 0.126 0.874 37 H 0.153 0.847 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.927 -19.276 -5.782 20.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.019 4.019 10 C 0.019 3.981 11 N -0.372 5.372 12 C 0.353 3.647 13 O -0.434 6.434 14 C -0.782 4.782 15 S 2.729 3.271 16 O -0.950 6.950 17 O -0.929 6.929 18 C -0.765 4.765 19 C -0.049 4.049 20 C -0.160 4.160 21 C -0.079 4.079 22 C -0.171 4.171 23 C -0.057 4.057 24 C -0.117 4.117 25 C -0.132 4.132 26 H 0.074 0.926 27 H 0.029 0.971 28 H 0.024 0.976 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.241 0.759 32 H 0.178 0.822 33 H 0.185 0.815 34 H 0.179 0.821 35 H 0.156 0.844 36 H 0.144 0.856 37 H 0.170 0.830 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.824 -19.496 -5.625 20.487 hybrid contribution 0.287 1.970 -0.176 1.999 sum 3.111 -17.525 -5.802 18.721 Atomic orbital electron populations 1.70079 1.07616 1.27935 1.50947 1.25857 0.95705 1.03048 0.94417 0.85405 0.79014 0.78830 0.77839 1.18816 1.20259 1.20398 1.21432 0.93545 0.91559 1.51526 0.92058 1.19181 0.94272 0.91903 0.96494 1.21351 0.95042 0.81296 1.00423 1.46354 1.12234 1.06085 1.72554 1.18613 0.86946 0.83075 0.76028 1.90645 1.14472 1.87299 1.50994 1.31764 1.23631 1.02244 1.20572 1.03721 0.74443 0.74181 0.74740 1.93561 1.47778 1.69004 1.84611 1.93541 1.84274 1.33505 1.81587 1.30313 1.18131 1.05976 1.22118 1.21272 0.90736 0.99949 0.92972 1.21721 1.00754 0.95791 0.97753 1.21922 0.93311 0.94232 0.98453 1.21590 0.98747 1.01377 0.95342 1.21044 0.95274 0.92607 0.96793 1.23306 1.00130 0.89744 0.98552 1.23358 1.03558 0.97629 0.88673 0.92558 0.97092 0.97631 0.92568 0.92758 0.75935 0.82242 0.81515 0.82149 0.84354 0.85591 0.82953 0.85703 0.85570 0.83549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.35 13.29 21.45 0.28 -54.06 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.96 43.18 29.54 68.60 2.03 45.21 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 7 C -0.54 -29.89 9.11 25.60 0.23 -29.65 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.02 0.96 5.09 29.85 0.15 1.11 16 10 C 0.14 6.05 5.62 86.38 0.49 6.54 16 11 N -0.72 -26.19 4.89 -463.05 -2.26 -28.45 16 12 C 0.57 18.78 6.60 87.66 0.58 19.36 16 13 O -0.56 -21.41 16.34 -3.03 -0.05 -21.46 16 14 C -0.69 -16.70 2.61 -11.54 -0.03 -16.73 16 15 S 2.55 66.82 5.01 -56.49 -0.28 66.53 16 16 O -0.95 -30.51 16.02 -127.65 -2.05 -32.56 16 17 O -0.93 -24.34 16.61 -127.65 -2.12 -26.46 16 18 C -0.68 -18.62 5.00 22.27 0.11 -18.51 16 19 C -0.03 -0.69 9.47 22.27 0.21 -0.48 16 20 C -0.14 -2.74 10.05 22.27 0.22 -2.51 16 21 C -0.06 -1.28 10.05 22.27 0.22 -1.06 16 22 C -0.15 -4.06 10.05 22.27 0.22 -3.84 16 23 C -0.04 -1.15 8.77 22.27 0.20 -0.96 16 24 C -0.08 -1.33 9.68 30.59 0.30 -1.04 16 25 C -0.09 -1.58 10.00 30.60 0.31 -1.27 16 26 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 27 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.05 2.36 8.14 -2.39 -0.02 2.35 16 31 H 0.40 14.20 6.50 -92.71 -0.60 13.59 16 32 H 0.16 2.72 7.72 -2.91 -0.02 2.70 16 33 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.16 2.27 8.06 -2.91 -0.02 2.24 16 35 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 36 H 0.13 4.10 6.85 -2.91 -0.02 4.08 16 37 H 0.15 1.73 7.68 -2.39 -0.02 1.71 16 38 H 0.12 2.20 7.73 -2.39 -0.02 2.18 16 39 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -74.34 356.13 -0.32 -74.66 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.46 Total: 24.67 kcal Atomic # 6 Polarization: -51.76 SS G_CDS: 3.67 Total: -48.09 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -1.98 Total: -82.51 kcal Atomic # 8 Polarization: -76.26 SS G_CDS: -4.22 Total: -80.47 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 66.82 SS G_CDS: -0.28 Total: 66.53 kcal Total: -74.34 -0.32 -74.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612059999.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.495 kcal (2) G-P(sol) polarization free energy of solvation -74.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds