Wall clock time and date at job start Sat Apr 11 2020 00:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86798 * 119.99851 * 2 1 4 4 H 1.48502 * 109.47242 * 269.99988 * 3 2 1 5 5 H 1.48506 * 109.47173 * 30.00115 * 3 2 1 6 6 H 1.48500 * 109.47503 * 149.99854 * 3 2 1 7 7 C 1.38750 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00133 * 179.97438 * 7 2 1 9 9 O 1.34917 * 120.00324 * 359.73070 * 7 2 1 10 10 C 1.34308 * 117.00495 * 180.27113 * 9 7 2 11 11 O 1.21208 * 120.00036 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00173 * 179.97438 * 10 9 7 13 13 H 1.08995 * 109.87325 * 40.69985 * 12 10 9 14 14 C 1.54333 * 109.88167 * 279.68341 * 12 10 9 15 15 C 1.55157 * 102.94111 * 218.38931 * 14 12 10 16 16 H 1.09001 * 110.99994 * 153.57976 * 15 14 12 17 17 O 1.42907 * 111.00513 * 277.39044 * 15 14 12 18 18 C 1.54911 * 101.58055 * 35.50457 * 15 14 12 19 19 N 1.47025 * 109.88466 * 161.72099 * 12 10 9 20 20 C 1.34779 * 125.64122 * 298.31289 * 19 12 10 21 21 O 1.21575 * 119.99679 * 178.19771 * 20 19 12 22 22 C 1.47723 * 120.00300 * 358.19093 * 20 19 12 23 23 C 1.39647 * 120.11784 * 353.46679 * 22 20 19 24 24 C 1.37840 * 119.87612 * 179.69506 * 23 22 20 25 25 C 1.38649 * 120.11984 * 0.59585 * 24 23 22 26 26 F 1.35102 * 119.88186 * 179.69555 * 25 24 23 27 27 C 1.38656 * 120.24217 * 359.68054 * 25 24 23 28 28 C 1.37838 * 120.11449 * 0.02562 * 27 25 24 29 29 H 0.96994 * 120.00161 * 0.02562 * 1 2 3 30 30 H 1.08993 * 110.72312 * 336.75527 * 14 12 10 31 31 H 1.09005 * 110.71764 * 100.02645 * 14 12 10 32 32 H 0.96699 * 113.99820 * 180.02562 * 17 15 14 33 33 H 1.08993 * 110.36483 * 81.83333 * 18 15 14 34 34 H 1.09003 * 110.36265 * 204.03847 * 18 15 14 35 35 H 1.07999 * 120.06406 * 359.97438 * 23 22 20 36 36 H 1.07999 * 119.93647 * 180.30083 * 24 23 22 37 37 H 1.07997 * 119.94352 * 179.97438 * 27 25 24 38 38 H 1.08004 * 120.05937 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4959 2.0465 -1.4001 5 1 1.4458 2.6527 0.7001 6 1 3.5460 1.4403 0.7001 7 6 2.0082 -1.2016 0.0005 8 1 3.0883 -1.2016 0.0001 9 8 1.3337 -2.3701 0.0066 10 6 2.0653 -3.4964 0.0124 11 8 3.2757 -3.4330 0.0116 12 6 1.3812 -4.8392 0.0199 13 1 0.5203 -4.8201 -0.6484 14 6 0.9259 -5.1883 1.4526 15 6 1.2025 -6.7123 1.5435 16 1 1.3765 -7.0168 2.5755 17 8 0.1330 -7.4625 0.9642 18 6 2.4951 -6.8445 0.7001 19 7 2.3238 -5.8830 -0.4084 20 6 2.9287 -5.9495 -1.6110 21 8 3.7183 -6.8437 -1.8456 22 6 2.6323 -4.9359 -2.6440 23 6 1.6280 -3.9896 -2.4294 24 6 1.3599 -3.0422 -3.3941 25 6 2.0767 -3.0354 -4.5808 26 9 1.8057 -2.1084 -5.5256 27 6 3.0711 -3.9762 -4.8015 28 6 3.3515 -4.9243 -3.8411 29 1 -0.4850 0.8400 -0.0004 30 1 1.5177 -4.6443 2.1887 31 1 -0.1365 -4.9808 1.5809 32 1 0.2610 -8.4203 0.9981 33 1 3.3673 -6.5832 1.2992 34 1 2.5925 -7.8583 0.3117 35 1 1.0655 -3.9972 -1.5075 36 1 0.5867 -2.3069 -3.2271 37 1 3.6262 -3.9667 -5.7278 38 1 4.1259 -5.6570 -4.0141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725958106.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:57:36 Heat of formation + Delta-G solvation = -133.909299 kcal Electronic energy + Delta-G solvation = -28492.248477 eV Core-core repulsion = 24216.627989 eV Total energy + Delta-G solvation = -4275.620487 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.105 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.71002 -41.03572 -38.89354 -38.47633 -37.38849 -35.76796 -34.81285 -32.30344 -31.64435 -30.90896 -30.46465 -28.86061 -25.77553 -24.70940 -23.07841 -22.55900 -21.32909 -20.98191 -19.27463 -18.09712 -17.71535 -17.49947 -17.32983 -16.82528 -16.11819 -15.48027 -15.35999 -15.27965 -15.16007 -14.46753 -14.36131 -14.17689 -14.11286 -13.90612 -13.30771 -13.16287 -12.93864 -12.86101 -12.48537 -12.27132 -12.06512 -11.83277 -11.66955 -11.60466 -11.27788 -11.03526 -10.56940 -10.50283 -10.43553 -10.30954 -9.95765 -9.78644 -9.34574 -8.90164 -8.68226 -8.61523 -8.39266 -6.52513 -4.19707 0.92764 1.45940 2.76933 3.01421 3.03778 3.14760 3.18544 3.31563 3.77806 3.94274 4.01878 4.29008 4.32205 4.41784 4.49940 4.78970 4.87135 4.98278 5.03156 5.10509 5.16173 5.37984 5.45063 5.52655 5.59613 5.65538 5.85817 5.87563 6.00939 6.11027 6.19540 6.29903 6.42826 6.50390 6.55712 7.03068 7.28503 7.45123 7.51933 7.81984 8.26909 8.54474 8.96368 9.65336 10.64054 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.009818 B = 0.006500 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.246748 B = 4306.880387 C = 6299.723892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.047 3.953 3 Si 0.938 3.062 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.378 4.378 8 H 0.095 0.905 9 O -0.209 6.209 10 C 0.377 3.623 11 O -0.535 6.535 12 C 0.136 3.864 13 H 0.115 0.885 14 C -0.112 4.112 15 C 0.090 3.910 16 H 0.087 0.913 17 O -0.553 6.553 18 C 0.080 3.920 19 N -0.587 5.587 20 C 0.594 3.406 21 O -0.544 6.544 22 C -0.139 4.139 23 C -0.086 4.086 24 C -0.137 4.137 25 C 0.118 3.882 26 F -0.138 7.138 27 C -0.167 4.167 28 C -0.037 4.037 29 H 0.271 0.729 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.380 0.620 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.169 0.831 36 H 0.147 0.853 37 H 0.138 0.862 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.664 -11.061 -0.841 11.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.158 4.158 3 Si 0.762 3.238 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.454 4.454 8 H 0.113 0.887 9 O -0.115 6.115 10 C 0.222 3.778 11 O -0.431 6.431 12 C 0.031 3.969 13 H 0.132 0.868 14 C -0.149 4.149 15 C 0.030 3.970 16 H 0.105 0.895 17 O -0.359 6.359 18 C -0.043 4.043 19 N -0.320 5.320 20 C 0.385 3.615 21 O -0.423 6.423 22 C -0.142 4.142 23 C -0.104 4.104 24 C -0.156 4.156 25 C 0.099 3.901 26 F -0.117 7.117 27 C -0.186 4.186 28 C -0.056 4.056 29 H 0.081 0.919 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.227 0.773 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.186 0.814 36 H 0.165 0.835 37 H 0.156 0.844 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.318 -10.711 -1.177 10.780 hybrid contribution 0.725 0.728 -0.042 1.028 sum 0.407 -9.983 -1.219 10.065 Atomic orbital electron populations 1.69966 1.05858 1.27883 1.45885 1.25273 0.95794 0.98672 0.96043 0.85748 0.79166 0.79911 0.78927 1.19764 1.20209 1.19102 1.21173 0.92356 0.79435 1.52418 0.88721 1.83879 1.39143 1.13136 1.75388 1.23071 0.87345 0.87268 0.80130 1.90625 1.15096 1.87434 1.49960 1.21557 0.91776 0.85090 0.98492 0.86765 1.22719 1.04585 0.93197 0.94438 1.22981 0.85848 0.92542 0.95631 0.89492 1.86546 1.43841 1.22087 1.83417 1.23044 0.98615 0.94116 0.88524 1.47930 1.45365 1.25321 1.13361 1.17728 0.79135 0.84257 0.80360 1.90722 1.34929 1.36629 1.80025 1.19797 1.00183 0.98480 0.95768 1.22730 0.95842 0.91805 1.00001 1.21213 1.01762 1.00484 0.92118 1.18024 0.96703 0.88313 0.87084 1.91494 1.92961 1.63950 1.63275 1.20999 0.99470 0.96661 1.01495 1.20966 0.97162 0.96649 0.90844 0.91920 0.88198 0.87471 0.77285 0.90089 0.89564 0.81420 0.83512 0.84382 0.84081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.38 13.67 55.48 0.76 -22.62 16 2 C 0.05 1.24 5.49 -17.53 -0.10 1.15 16 3 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.38 -10.37 9.64 30.92 0.30 -10.07 16 8 H 0.10 2.70 6.86 -52.48 -0.36 2.34 16 9 O -0.21 -5.34 9.21 -20.69 -0.19 -5.53 16 10 C 0.38 8.49 3.71 36.00 0.13 8.62 16 11 O -0.54 -13.66 15.17 -19.05 -0.29 -13.95 16 12 C 0.14 2.37 2.64 -68.10 -0.18 2.19 16 13 H 0.12 1.90 6.06 -51.93 -0.31 1.59 16 14 C -0.11 -1.54 6.20 -24.89 -0.15 -1.70 16 15 C 0.09 0.96 4.43 -24.58 -0.11 0.85 16 16 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 17 O -0.55 -5.80 13.47 -35.23 -0.47 -6.27 16 18 C 0.08 1.05 6.66 -2.36 -0.02 1.03 16 19 N -0.59 -10.10 2.76 -167.72 -0.46 -10.57 16 20 C 0.59 11.45 7.27 -12.38 -0.09 11.36 16 21 O -0.54 -11.17 16.65 5.30 0.09 -11.09 16 22 C -0.14 -2.62 5.53 -104.97 -0.58 -3.20 16 23 C -0.09 -1.66 7.06 -39.20 -0.28 -1.93 16 24 C -0.14 -2.56 10.01 -39.58 -0.40 -2.96 16 25 C 0.12 2.03 7.31 -39.28 -0.29 1.74 16 26 F -0.14 -2.33 17.26 2.25 0.04 -2.30 16 27 C -0.17 -2.57 10.01 -39.57 -0.40 -2.97 16 28 C -0.04 -0.62 9.59 -39.20 -0.38 -0.99 16 29 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.10 1.40 7.84 -51.93 -0.41 1.00 16 31 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.38 2.25 9.12 45.56 0.42 2.67 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 35 H 0.17 3.27 1.86 -55.86 -0.10 3.17 16 36 H 0.15 2.76 8.06 -52.49 -0.42 2.34 16 37 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.14 2.13 7.66 -52.48 -0.40 1.72 16 LS Contribution 330.92 15.07 4.99 4.99 Total: -1.00 -34.02 330.92 -5.93 -39.95 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -2.84 Total: 8.71 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -2.53 Total: 3.14 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.29 Total: -33.19 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.87 Total: -36.84 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.02 -5.93 -39.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725958106.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.955 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds