Wall clock time and date at job start Sat Apr 11 2020 00:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86798 * 119.99851 * 2 1 4 4 H 1.48502 * 109.47242 * 269.99988 * 3 2 1 5 5 H 1.48506 * 109.47173 * 30.00115 * 3 2 1 6 6 H 1.48500 * 109.47503 * 149.99854 * 3 2 1 7 7 C 1.38750 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00133 * 179.97438 * 7 2 1 9 9 O 1.34917 * 120.00324 * 359.73070 * 7 2 1 10 10 C 1.34308 * 117.00495 * 180.27113 * 9 7 2 11 11 O 1.21208 * 120.00036 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00173 * 179.97438 * 10 9 7 13 13 H 1.08995 * 109.87325 * 40.69985 * 12 10 9 14 14 C 1.54333 * 109.88167 * 279.68341 * 12 10 9 15 15 C 1.55157 * 102.94111 * 218.38931 * 14 12 10 16 16 H 1.09001 * 110.99994 * 153.57976 * 15 14 12 17 17 O 1.42907 * 111.00513 * 277.39044 * 15 14 12 18 18 C 1.54911 * 101.58055 * 35.50457 * 15 14 12 19 19 N 1.47025 * 109.88466 * 161.72099 * 12 10 9 20 20 C 1.34779 * 125.64122 * 298.31289 * 19 12 10 21 21 O 1.21575 * 119.99679 * 178.19771 * 20 19 12 22 22 C 1.47723 * 120.00300 * 358.19093 * 20 19 12 23 23 C 1.39647 * 120.11784 * 353.46679 * 22 20 19 24 24 C 1.37840 * 119.87612 * 179.69506 * 23 22 20 25 25 C 1.38649 * 120.11984 * 0.59585 * 24 23 22 26 26 F 1.35102 * 119.88186 * 179.69555 * 25 24 23 27 27 C 1.38656 * 120.24217 * 359.68054 * 25 24 23 28 28 C 1.37838 * 120.11449 * 0.02562 * 27 25 24 29 29 H 0.96994 * 120.00161 * 0.02562 * 1 2 3 30 30 H 1.08993 * 110.72312 * 336.75527 * 14 12 10 31 31 H 1.09005 * 110.71764 * 100.02645 * 14 12 10 32 32 H 0.96699 * 113.99820 * 180.02562 * 17 15 14 33 33 H 1.08993 * 110.36483 * 81.83333 * 18 15 14 34 34 H 1.09003 * 110.36265 * 204.03847 * 18 15 14 35 35 H 1.07999 * 120.06406 * 359.97438 * 23 22 20 36 36 H 1.07999 * 119.93647 * 180.30083 * 24 23 22 37 37 H 1.07997 * 119.94352 * 179.97438 * 27 25 24 38 38 H 1.08004 * 120.05937 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4959 2.0465 -1.4001 5 1 1.4458 2.6527 0.7001 6 1 3.5460 1.4403 0.7001 7 6 2.0082 -1.2016 0.0005 8 1 3.0883 -1.2016 0.0001 9 8 1.3337 -2.3701 0.0066 10 6 2.0653 -3.4964 0.0124 11 8 3.2757 -3.4330 0.0116 12 6 1.3812 -4.8392 0.0199 13 1 0.5203 -4.8201 -0.6484 14 6 0.9259 -5.1883 1.4526 15 6 1.2025 -6.7123 1.5435 16 1 1.3765 -7.0168 2.5755 17 8 0.1330 -7.4625 0.9642 18 6 2.4951 -6.8445 0.7001 19 7 2.3238 -5.8830 -0.4084 20 6 2.9287 -5.9495 -1.6110 21 8 3.7183 -6.8437 -1.8456 22 6 2.6323 -4.9359 -2.6440 23 6 1.6280 -3.9896 -2.4294 24 6 1.3599 -3.0422 -3.3941 25 6 2.0767 -3.0354 -4.5808 26 9 1.8057 -2.1084 -5.5256 27 6 3.0711 -3.9762 -4.8015 28 6 3.3515 -4.9243 -3.8411 29 1 -0.4850 0.8400 -0.0004 30 1 1.5177 -4.6443 2.1887 31 1 -0.1365 -4.9808 1.5809 32 1 0.2610 -8.4203 0.9981 33 1 3.3673 -6.5832 1.2992 34 1 2.5925 -7.8583 0.3117 35 1 1.0655 -3.9972 -1.5075 36 1 0.5867 -2.3069 -3.2271 37 1 3.6262 -3.9667 -5.7278 38 1 4.1259 -5.6570 -4.0141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725958106.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:57:36 Heat of formation + Delta-G solvation = -157.783184 kcal Electronic energy + Delta-G solvation = -28493.283726 eV Core-core repulsion = 24216.627989 eV Total energy + Delta-G solvation = -4276.655737 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.105 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.08475 -42.51611 -40.61988 -39.73157 -38.75576 -37.34909 -36.27558 -34.31326 -32.90956 -32.29645 -31.82289 -30.12177 -27.58350 -26.19630 -24.44630 -23.96445 -22.76140 -22.21138 -20.77526 -19.92870 -19.25848 -18.86130 -18.63005 -18.24208 -17.46202 -16.95272 -16.92818 -16.72469 -16.68986 -16.22370 -15.85289 -15.47753 -15.35617 -15.18837 -14.69958 -14.56053 -14.46852 -14.28932 -13.77774 -13.72098 -13.48713 -13.33474 -13.18893 -13.02041 -12.85950 -12.41460 -12.20883 -12.13829 -12.00813 -11.69634 -11.42864 -11.17776 -11.00406 -10.68454 -10.28909 -10.05801 -9.79109 -8.53024 -6.30109 -0.49521 0.07059 1.21627 1.30888 1.40903 1.48580 1.57748 1.68419 2.08485 2.49430 2.66905 2.96165 2.98452 3.04505 3.21557 3.33677 3.54120 3.65150 3.72321 3.85186 3.97058 4.06589 4.14793 4.43067 4.50454 4.58353 4.63672 4.68952 4.77113 4.80374 4.88905 4.91913 5.00040 5.03792 5.15188 5.18576 5.65606 5.82383 6.07658 6.61852 6.81867 6.91783 6.92889 7.70070 8.65492 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.009818 B = 0.006500 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.246748 B = 4306.880387 C = 6299.723892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.008 3.992 3 Si 0.999 3.001 4 H -0.266 1.266 5 H -0.259 1.259 6 H -0.267 1.267 7 C -0.406 4.406 8 H 0.074 0.926 9 O -0.228 6.228 10 C 0.389 3.611 11 O -0.568 6.568 12 C 0.140 3.860 13 H 0.121 0.879 14 C -0.114 4.114 15 C 0.113 3.887 16 H 0.131 0.869 17 O -0.567 6.567 18 C 0.068 3.932 19 N -0.588 5.588 20 C 0.584 3.416 21 O -0.563 6.563 22 C -0.159 4.159 23 C -0.101 4.101 24 C -0.155 4.155 25 C 0.115 3.885 26 F -0.136 7.136 27 C -0.149 4.149 28 C -0.037 4.037 29 H 0.278 0.722 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.402 0.598 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.161 0.839 36 H 0.135 0.865 37 H 0.179 0.821 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.410 -11.944 -0.738 11.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.193 4.193 3 Si 0.820 3.180 4 H -0.191 1.191 5 H -0.183 1.183 6 H -0.192 1.192 7 C -0.482 4.482 8 H 0.092 0.908 9 O -0.135 6.135 10 C 0.235 3.765 11 O -0.465 6.465 12 C 0.035 3.965 13 H 0.138 0.862 14 C -0.152 4.152 15 C 0.054 3.946 16 H 0.149 0.851 17 O -0.376 6.376 18 C -0.053 4.053 19 N -0.320 5.320 20 C 0.376 3.624 21 O -0.444 6.444 22 C -0.162 4.162 23 C -0.119 4.119 24 C -0.174 4.174 25 C 0.095 3.905 26 F -0.114 7.114 27 C -0.167 4.167 28 C -0.056 4.056 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.136 0.864 32 H 0.253 0.747 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.177 0.823 36 H 0.152 0.848 37 H 0.196 0.804 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.087 -11.633 -1.051 11.681 hybrid contribution 0.657 0.893 -0.118 1.115 sum 0.570 -10.740 -1.169 10.819 Atomic orbital electron populations 1.70028 1.07073 1.29187 1.46411 1.26195 0.96702 1.01449 0.94993 0.84870 0.77981 0.75912 0.79271 1.19097 1.18286 1.19169 1.21159 0.91703 0.80833 1.54498 0.90778 1.83901 1.39600 1.13592 1.76446 1.24076 0.87070 0.88174 0.77186 1.90592 1.16796 1.88108 1.51027 1.21650 0.91315 0.82237 1.01330 0.86162 1.22802 1.04981 0.95969 0.91453 1.22882 0.84269 0.90285 0.97183 0.85142 1.86499 1.43464 1.24063 1.83585 1.23432 1.00246 0.93879 0.87746 1.48102 1.44619 1.25594 1.13699 1.17899 0.79185 0.84177 0.81148 1.90692 1.35788 1.37303 1.80589 1.20040 1.00646 0.98625 0.96888 1.22658 0.96566 0.92597 1.00033 1.21202 1.02367 1.00559 0.93227 1.18111 0.96998 0.88805 0.86575 1.91497 1.93001 1.63966 1.62979 1.21357 0.98207 0.94759 1.02418 1.21263 0.97011 0.97118 0.90192 0.91236 0.88573 0.86405 0.74703 0.90095 0.88044 0.82307 0.84754 0.80396 0.82284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.20 13.67 21.62 0.30 -48.90 16 2 C 0.01 0.45 5.49 84.87 0.47 0.92 16 3 Si 1.00 42.29 29.55 68.60 2.03 44.32 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.41 -23.10 9.64 67.94 0.66 -22.45 16 8 H 0.07 4.42 6.86 -2.91 -0.02 4.40 16 9 O -0.23 -12.14 9.21 14.93 0.14 -12.01 16 10 C 0.39 18.04 3.71 71.23 0.26 18.31 16 11 O -0.57 -29.97 15.17 20.78 0.32 -29.65 16 12 C 0.14 4.91 2.64 44.60 0.12 5.03 16 13 H 0.12 4.10 6.06 -2.39 -0.01 4.09 16 14 C -0.11 -3.01 6.20 31.79 0.20 -2.81 16 15 C 0.11 2.10 4.43 31.99 0.14 2.24 16 16 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 17 O -0.57 -10.10 13.47 -148.98 -2.01 -12.11 16 18 C 0.07 1.67 6.66 86.80 0.58 2.25 16 19 N -0.59 -20.01 2.76 -802.82 -2.22 -22.22 16 20 C 0.58 22.50 7.27 86.75 0.63 23.14 16 21 O -0.56 -22.83 16.65 -3.95 -0.07 -22.89 16 22 C -0.16 -6.02 5.53 -20.09 -0.11 -6.13 16 23 C -0.10 -4.00 7.06 22.52 0.16 -3.84 16 24 C -0.15 -5.98 10.01 22.27 0.22 -5.75 16 25 C 0.11 3.89 7.31 22.47 0.16 4.06 16 26 F -0.14 -4.49 17.26 44.97 0.78 -3.71 16 27 C -0.15 -4.31 10.01 22.27 0.22 -4.09 16 28 C -0.04 -1.19 9.59 22.52 0.22 -0.98 16 29 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 30 H 0.10 2.62 7.84 -2.39 -0.02 2.60 16 31 H 0.12 2.87 8.14 -2.38 -0.02 2.85 16 32 H 0.40 3.30 9.12 -74.06 -0.68 2.63 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.10 2.19 8.07 -2.39 -0.02 2.17 16 35 H 0.16 6.48 1.86 -6.08 -0.01 6.47 16 36 H 0.13 5.39 8.06 -2.91 -0.02 5.37 16 37 H 0.18 3.68 8.06 -2.91 -0.02 3.66 16 38 H 0.16 4.51 7.66 -2.91 -0.02 4.49 16 Total: -1.00 -75.67 330.92 3.65 -72.02 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.46 Total: 25.28 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 3.92 Total: 9.88 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -1.92 Total: -71.13 kcal Atomic # 8 Polarization: -75.04 SS G_CDS: -1.62 Total: -76.66 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.78 Total: -3.71 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -75.67 3.65 -72.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725958106.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.763 kcal (2) G-P(sol) polarization free energy of solvation -75.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds