Wall clock time and date at job start Sat Apr 11 2020 00:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21292 * 120.00034 * 2 1 4 4 N 1.34777 * 120.00290 * 180.02562 * 2 1 3 5 5 C 1.39924 * 120.00186 * 185.27302 * 4 2 1 6 6 C 1.38897 * 120.07107 * 213.47404 * 5 4 2 7 7 C 1.38089 * 119.92940 * 180.23068 * 6 5 4 8 8 C 1.38304 * 120.06978 * 359.81772 * 7 6 5 9 9 C 1.38255 * 120.14137 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.96630 * 179.97438 * 9 8 7 11 11 H 1.08997 * 109.47477 * 204.97613 * 10 9 8 12 12 C 1.53002 * 109.47285 * 84.97237 * 10 9 8 13 13 O 1.45203 * 109.46989 * 324.97685 * 10 9 8 14 14 C 1.34222 * 117.00166 * 210.00134 * 13 10 9 15 15 O 1.20828 * 120.00011 * 359.97438 * 14 13 10 16 16 C 1.50702 * 120.00183 * 179.97438 * 14 13 10 17 17 S 1.80998 * 109.47386 * 179.97438 * 16 14 13 18 18 C 1.76195 * 100.00169 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99925 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00236 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99558 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00021 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47412 * 60.00040 * 22 20 18 24 24 H 1.48505 * 109.47372 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47408 * 299.99604 * 22 20 18 26 26 C 1.38138 * 120.07287 * 359.95681 * 9 8 7 27 27 H 1.08996 * 109.46824 * 239.99743 * 1 2 3 28 28 H 1.08994 * 109.46806 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46926 * 119.99891 * 1 2 3 30 30 H 0.97006 * 119.99678 * 5.27373 * 4 2 1 31 31 H 1.08006 * 120.03486 * 359.97438 * 6 5 4 32 32 H 1.07995 * 119.96430 * 179.78873 * 7 6 5 33 33 H 1.08002 * 119.92654 * 179.97438 * 8 7 6 34 34 H 1.08997 * 109.47169 * 300.00564 * 12 10 9 35 35 H 1.09000 * 109.46892 * 60.00846 * 12 10 9 36 36 H 1.09003 * 109.47159 * 180.02562 * 12 10 9 37 37 H 1.08993 * 109.47498 * 300.00528 * 16 14 13 38 38 H 1.09007 * 109.46750 * 60.00226 * 16 14 13 39 39 H 0.97003 * 120.00114 * 180.02562 * 21 20 18 40 40 H 1.07996 * 120.03366 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5758 -1.1698 0.1108 6 6 4.3241 -2.1418 -0.5405 7 6 5.7002 -2.1445 -0.4247 8 6 6.3335 -1.1783 0.3357 9 6 5.5917 -0.2068 0.9818 10 6 6.2858 0.8438 1.8098 11 1 5.5987 1.2228 2.5662 12 6 6.7327 1.9936 0.9047 13 8 7.4460 0.2599 2.4589 14 6 7.8085 0.7800 3.6420 15 8 7.1776 1.6932 4.1192 16 6 9.0025 0.2248 4.3751 17 16 9.2326 1.1295 5.9258 18 6 10.6520 0.2984 6.5572 19 1 11.0990 -0.5092 5.9964 20 6 11.1953 0.6807 7.7760 21 7 10.6502 1.6646 8.4597 22 14 12.6997 -0.2009 8.4457 23 1 13.8261 -0.0544 7.4892 24 1 13.0805 0.3927 9.7526 25 1 12.3891 -1.6416 8.6277 26 6 4.2150 -0.1978 0.8688 27 1 -0.3633 -0.5139 0.8899 28 1 -0.3633 1.0276 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 1.6990 -2.0055 -0.0781 31 1 3.8301 -2.8973 -1.1335 32 1 6.2824 -2.9021 -0.9281 33 1 7.4098 -1.1828 0.4250 34 1 7.4198 1.6145 0.1483 35 1 5.8618 2.4320 0.4175 36 1 7.2351 2.7532 1.5036 37 1 8.8379 -0.8308 4.5909 38 1 9.8925 0.3345 3.7554 39 1 11.0300 1.9321 9.3113 40 1 3.6362 0.5617 1.3734 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000139054360.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:56:06 Heat of formation + Delta-G solvation = -100.448078 kcal Electronic energy + Delta-G solvation = -23691.970903 eV Core-core repulsion = 19984.014579 eV Total energy + Delta-G solvation = -3707.956324 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.90191 -40.13561 -38.75162 -36.39205 -35.08348 -32.93474 -32.47019 -31.22833 -29.94963 -29.17450 -28.69884 -25.55242 -24.30794 -23.28243 -21.74803 -20.98693 -20.17878 -18.05812 -17.83508 -17.36918 -16.95388 -16.39504 -15.90730 -15.84819 -15.64665 -14.86330 -14.83187 -14.43636 -14.08475 -13.98636 -13.75519 -13.59313 -13.18852 -12.98919 -12.86890 -12.66478 -12.56642 -12.38455 -12.03429 -11.86724 -11.60397 -11.08746 -11.05220 -10.98173 -10.82178 -10.66352 -10.48502 -10.21827 -9.95761 -9.89608 -9.09302 -8.99605 -8.37123 -8.33992 -6.58328 -6.25552 -3.98076 1.00599 1.15741 2.21470 2.60726 2.70636 2.72930 3.22861 3.24582 3.28233 3.49677 3.63729 4.16337 4.24682 4.47810 4.71075 4.75874 4.85914 4.88869 4.99263 5.09630 5.10049 5.17235 5.22632 5.28079 5.35176 5.40950 5.47582 5.67268 5.80613 5.81627 5.84128 6.02168 6.09466 6.10489 6.14792 6.26718 6.43048 6.78807 6.79789 6.97051 7.56530 7.70207 8.21615 8.31702 9.19635 10.81879 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.023720 B = 0.002277 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.177830 B =12295.040628 C =12708.862112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.507 3.493 3 O -0.522 6.522 4 N -0.675 5.675 5 C 0.140 3.860 6 C -0.144 4.144 7 C -0.102 4.102 8 C -0.106 4.106 9 C -0.065 4.065 10 C 0.127 3.873 11 H 0.094 0.906 12 C -0.162 4.162 13 O -0.353 6.353 14 C 0.479 3.521 15 O -0.487 6.487 16 C -0.128 4.128 17 S -0.058 6.058 18 C -0.536 4.536 19 H 0.075 0.925 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.922 3.078 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.273 1.273 26 C -0.108 4.108 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.411 0.589 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.270 0.730 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.832 -9.132 -20.854 28.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.296 3.704 3 O -0.397 6.397 4 N -0.321 5.321 5 C 0.047 3.953 6 C -0.164 4.164 7 C -0.121 4.121 8 C -0.124 4.124 9 C -0.066 4.066 10 C 0.072 3.928 11 H 0.112 0.888 12 C -0.220 4.220 13 O -0.271 6.271 14 C 0.321 3.679 15 O -0.372 6.372 16 C -0.276 4.276 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.094 0.906 20 C -0.135 4.135 21 N -0.502 5.502 22 Si 0.748 3.252 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.128 4.128 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.247 0.753 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.297 -7.073 -20.111 28.094 hybrid contribution 1.277 -2.003 -0.150 2.380 sum -17.020 -9.076 -20.261 27.974 Atomic orbital electron populations 1.21931 0.90614 1.06138 1.04558 1.21057 0.90971 0.83169 0.75244 1.90779 1.70571 1.31179 1.47128 1.43588 1.05262 1.09936 1.73332 1.17581 0.82593 0.97594 0.97567 1.20884 0.94281 1.00280 1.00989 1.20961 0.93672 0.98691 0.98747 1.21074 1.00826 0.94106 0.96423 1.19516 0.92747 0.96423 0.97889 1.21327 0.86380 0.91437 0.93681 0.88800 1.22161 1.02622 0.97315 0.99853 1.86554 1.45901 1.60166 1.34503 1.23307 0.85213 0.80821 0.78601 1.90660 1.52758 1.27576 1.66221 1.23293 0.95654 1.05477 1.03156 1.85421 1.39315 1.45738 1.12712 1.22804 1.14786 1.22253 1.08587 0.90650 1.25004 0.97783 0.95132 0.95622 1.70002 1.39786 1.26357 1.14092 0.86178 0.81436 0.79529 0.78100 1.19845 1.20794 1.19853 1.20868 0.93585 0.99517 0.98831 0.88920 0.88469 0.89134 0.75291 0.85755 0.85363 0.84961 0.91471 0.90588 0.91151 0.87966 0.87924 0.92029 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 10.32 36.01 0.37 -0.31 16 2 C 0.51 4.36 7.68 -10.98 -0.08 4.27 16 3 O -0.52 -6.99 14.77 5.55 0.08 -6.91 16 4 N -0.68 -4.90 5.34 -9.86 -0.05 -4.95 16 5 C 0.14 1.44 6.28 -83.69 -0.53 0.91 16 6 C -0.14 -1.25 9.96 -39.39 -0.39 -1.64 16 7 C -0.10 -0.95 10.04 -39.61 -0.40 -1.35 16 8 C -0.11 -1.22 9.35 -39.55 -0.37 -1.59 16 9 C -0.06 -0.85 5.01 -104.65 -0.52 -1.38 16 10 C 0.13 1.88 2.77 -27.88 -0.08 1.80 16 11 H 0.09 1.51 7.06 -51.93 -0.37 1.15 16 12 C -0.16 -2.15 9.53 37.16 0.35 -1.79 16 13 O -0.35 -5.86 9.02 -39.24 -0.35 -6.21 16 14 C 0.48 9.47 7.95 36.01 0.29 9.76 16 15 O -0.49 -10.95 15.08 -18.75 -0.28 -11.24 16 16 C -0.13 -2.65 6.27 36.01 0.23 -2.43 16 17 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 18 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 19 H 0.08 2.01 7.80 -52.48 -0.41 1.60 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -25.94 13.22 55.49 0.73 -25.20 16 22 Si 0.92 21.27 29.55 -169.99 -5.02 16.25 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C -0.11 -1.37 8.29 -39.39 -0.33 -1.70 16 27 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.10 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.41 1.40 8.82 -40.82 -0.36 1.04 16 31 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 32 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.13 1.48 7.62 -52.49 -0.40 1.08 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.10 1.97 8.14 -51.92 -0.42 1.54 16 38 H 0.10 1.96 8.14 -51.91 -0.42 1.54 16 39 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.14 1.88 6.41 -52.49 -0.34 1.54 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -35.84 364.58 -8.11 -43.95 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.23 Total: 0.89 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -1.26 Total: -8.29 kcal Atomic # 7 Polarization: -30.84 SS G_CDS: 0.68 Total: -30.15 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.55 Total: -24.36 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.84 -8.11 -43.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139054360.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.499 kcal (2) G-P(sol) polarization free energy of solvation -35.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds