Wall clock time and date at job start Sat Apr 11 2020 00:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21292 * 120.00034 * 2 1 4 4 N 1.34777 * 120.00290 * 180.02562 * 2 1 3 5 5 C 1.39924 * 120.00186 * 185.27302 * 4 2 1 6 6 C 1.38897 * 120.07107 * 213.47404 * 5 4 2 7 7 C 1.38089 * 119.92940 * 180.23068 * 6 5 4 8 8 C 1.38304 * 120.06978 * 359.81772 * 7 6 5 9 9 C 1.38255 * 120.14137 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.96630 * 179.97438 * 9 8 7 11 11 H 1.08997 * 109.47477 * 204.97613 * 10 9 8 12 12 C 1.53002 * 109.47285 * 84.97237 * 10 9 8 13 13 O 1.45203 * 109.46989 * 324.97685 * 10 9 8 14 14 C 1.34222 * 117.00166 * 210.00134 * 13 10 9 15 15 O 1.20828 * 120.00011 * 359.97438 * 14 13 10 16 16 C 1.50702 * 120.00183 * 179.97438 * 14 13 10 17 17 S 1.80998 * 109.47386 * 179.97438 * 16 14 13 18 18 C 1.76195 * 100.00169 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99925 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00236 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99558 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00021 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47412 * 60.00040 * 22 20 18 24 24 H 1.48505 * 109.47372 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47408 * 299.99604 * 22 20 18 26 26 C 1.38138 * 120.07287 * 359.95681 * 9 8 7 27 27 H 1.08996 * 109.46824 * 239.99743 * 1 2 3 28 28 H 1.08994 * 109.46806 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46926 * 119.99891 * 1 2 3 30 30 H 0.97006 * 119.99678 * 5.27373 * 4 2 1 31 31 H 1.08006 * 120.03486 * 359.97438 * 6 5 4 32 32 H 1.07995 * 119.96430 * 179.78873 * 7 6 5 33 33 H 1.08002 * 119.92654 * 179.97438 * 8 7 6 34 34 H 1.08997 * 109.47169 * 300.00564 * 12 10 9 35 35 H 1.09000 * 109.46892 * 60.00846 * 12 10 9 36 36 H 1.09003 * 109.47159 * 180.02562 * 12 10 9 37 37 H 1.08993 * 109.47498 * 300.00528 * 16 14 13 38 38 H 1.09007 * 109.46750 * 60.00226 * 16 14 13 39 39 H 0.97003 * 120.00114 * 180.02562 * 21 20 18 40 40 H 1.07996 * 120.03366 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 3.5758 -1.1698 0.1108 6 6 4.3241 -2.1418 -0.5405 7 6 5.7002 -2.1445 -0.4247 8 6 6.3335 -1.1783 0.3357 9 6 5.5917 -0.2068 0.9818 10 6 6.2858 0.8438 1.8098 11 1 5.5987 1.2228 2.5662 12 6 6.7327 1.9936 0.9047 13 8 7.4460 0.2599 2.4589 14 6 7.8085 0.7800 3.6420 15 8 7.1776 1.6932 4.1192 16 6 9.0025 0.2248 4.3751 17 16 9.2326 1.1295 5.9258 18 6 10.6520 0.2984 6.5572 19 1 11.0990 -0.5092 5.9964 20 6 11.1953 0.6807 7.7760 21 7 10.6502 1.6646 8.4597 22 14 12.6997 -0.2009 8.4457 23 1 13.8261 -0.0544 7.4892 24 1 13.0805 0.3927 9.7526 25 1 12.3891 -1.6416 8.6277 26 6 4.2150 -0.1978 0.8688 27 1 -0.3633 -0.5139 0.8899 28 1 -0.3633 1.0276 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 1.6990 -2.0055 -0.0781 31 1 3.8301 -2.8973 -1.1335 32 1 6.2824 -2.9021 -0.9281 33 1 7.4098 -1.1828 0.4250 34 1 7.4198 1.6145 0.1483 35 1 5.8618 2.4320 0.4175 36 1 7.2351 2.7532 1.5036 37 1 8.8379 -0.8308 4.5909 38 1 9.8925 0.3345 3.7554 39 1 11.0300 1.9321 9.3113 40 1 3.6362 0.5617 1.3734 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000139054360.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:56:06 Heat of formation + Delta-G solvation = -123.158398 kcal Electronic energy + Delta-G solvation = -23692.955696 eV Core-core repulsion = 19984.014579 eV Total energy + Delta-G solvation = -3708.941117 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.86440 -41.38581 -39.65903 -37.78926 -35.94511 -34.61292 -33.99445 -31.85303 -31.33192 -30.36984 -29.34603 -27.71654 -25.40002 -24.05771 -22.95721 -21.85480 -21.27987 -19.93315 -18.90802 -18.59637 -17.91338 -17.41953 -17.18774 -17.01122 -16.88752 -16.53576 -16.07503 -15.71163 -15.25970 -15.08811 -14.83844 -14.58423 -14.47562 -14.18260 -13.97972 -13.59033 -13.43701 -13.33383 -13.19249 -13.05507 -12.87321 -12.77196 -12.70022 -12.60486 -12.08200 -11.82741 -11.78633 -11.61614 -11.43955 -11.14516 -10.97001 -10.38857 -9.85273 -9.14773 -8.74730 -8.37250 -6.17592 0.18033 0.31469 1.00687 1.09571 1.40629 1.45093 1.53929 1.56084 1.83288 2.10595 2.24042 2.76296 2.97593 3.23577 3.41777 3.71124 3.79857 3.86592 4.00467 4.06251 4.16787 4.18646 4.34638 4.41881 4.44447 4.52972 4.56233 4.63988 4.64745 4.67804 4.92085 5.01622 5.08432 5.22584 5.26600 5.36694 5.40670 5.48077 5.61986 6.00152 6.17884 6.41871 6.65062 7.03969 7.12038 8.71807 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.023720 B = 0.002277 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.177830 B =12295.040628 C =12708.862112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.499 3.501 3 O -0.579 6.579 4 N -0.661 5.661 5 C 0.134 3.866 6 C -0.131 4.131 7 C -0.096 4.096 8 C -0.118 4.118 9 C -0.083 4.083 10 C 0.125 3.875 11 H 0.071 0.929 12 C -0.156 4.156 13 O -0.339 6.339 14 C 0.487 3.513 15 O -0.521 6.521 16 C -0.106 4.106 17 S -0.140 6.140 18 C -0.548 4.548 19 H 0.087 0.913 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 1.001 2.999 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.261 1.261 26 C -0.130 4.130 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.121 0.879 30 H 0.432 0.568 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.134 0.866 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.272 0.728 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.913 -12.500 -22.981 31.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.290 3.710 3 O -0.458 6.458 4 N -0.309 5.309 5 C 0.040 3.960 6 C -0.151 4.151 7 C -0.114 4.114 8 C -0.137 4.137 9 C -0.084 4.084 10 C 0.070 3.930 11 H 0.089 0.911 12 C -0.213 4.213 13 O -0.256 6.256 14 C 0.329 3.671 15 O -0.409 6.409 16 C -0.254 4.254 17 S 0.087 5.913 18 C -0.695 4.695 19 H 0.105 0.895 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.822 3.178 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.186 1.186 26 C -0.151 4.151 27 H 0.132 0.868 28 H 0.107 0.893 29 H 0.140 0.860 30 H 0.272 0.728 31 H 0.182 0.818 32 H 0.179 0.821 33 H 0.152 0.848 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.073 0.927 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.081 0.919 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.414 -10.496 -22.270 30.744 hybrid contribution 1.163 -1.006 0.364 1.580 sum -17.250 -11.502 -21.906 30.162 Atomic orbital electron populations 1.21955 0.86743 1.06463 1.07020 1.21980 0.92805 0.82512 0.73701 1.90763 1.71993 1.33246 1.49811 1.43552 1.04249 1.10784 1.72301 1.17772 0.84129 0.97147 0.96996 1.21309 0.94104 0.99905 0.99824 1.21351 0.94291 0.98230 0.97519 1.21196 1.00932 0.94472 0.97082 1.19374 0.92980 0.97044 0.99012 1.21480 0.85232 0.92839 0.93435 0.91126 1.22114 1.03110 0.96418 0.99644 1.86521 1.46545 1.59614 1.32932 1.23093 0.84615 0.80161 0.79184 1.90657 1.53816 1.29141 1.67285 1.23083 0.97024 1.05234 1.00058 1.85578 1.40117 1.48251 1.17339 1.23161 1.14766 1.22483 1.09130 0.89473 1.26152 1.01258 0.95818 0.95826 1.70165 1.41707 1.28160 1.14630 0.84964 0.76971 0.78427 0.77404 1.18570 1.20395 1.18558 1.20788 0.93491 1.00385 1.00386 0.86752 0.89305 0.86028 0.72785 0.81837 0.82136 0.84838 0.89868 0.89845 0.92669 0.85968 0.85766 0.91857 0.87087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 10.32 71.24 0.74 -0.21 16 2 C 0.50 8.24 7.68 87.66 0.67 8.91 16 3 O -0.58 -16.24 14.77 -3.07 -0.05 -16.28 16 4 N -0.66 -8.36 5.34 -303.50 -1.62 -9.98 16 5 C 0.13 2.55 6.28 38.15 0.24 2.79 16 6 C -0.13 -1.82 9.96 22.39 0.22 -1.60 16 7 C -0.10 -1.47 10.04 22.25 0.22 -1.25 16 8 C -0.12 -2.56 9.35 22.29 0.21 -2.35 16 9 C -0.08 -2.22 5.01 -19.88 -0.10 -2.32 16 10 C 0.13 3.87 2.77 29.85 0.08 3.95 16 11 H 0.07 2.49 7.06 -2.39 -0.02 2.48 16 12 C -0.16 -4.28 9.53 71.98 0.69 -3.59 16 13 O -0.34 -11.35 9.02 -51.34 -0.46 -11.81 16 14 C 0.49 19.63 7.95 71.24 0.57 20.20 16 15 O -0.52 -24.58 15.08 21.96 0.33 -24.25 16 16 C -0.11 -4.36 6.27 71.24 0.45 -3.92 16 17 S -0.14 -7.74 20.57 -56.49 -1.16 -8.91 16 18 C -0.55 -31.03 9.50 67.96 0.65 -30.39 16 19 H 0.09 4.56 7.80 -2.91 -0.02 4.53 16 20 C 0.01 0.82 5.49 84.86 0.47 1.28 16 21 N -0.91 -55.54 13.22 21.65 0.29 -55.25 16 22 Si 1.00 43.23 29.55 68.60 2.03 45.26 16 23 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 24 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 26 C -0.13 -3.41 8.29 22.39 0.19 -3.23 16 27 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 28 H 0.09 0.72 8.12 -2.39 -0.02 0.70 16 29 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.43 1.53 8.82 -92.70 -0.82 0.71 16 31 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 32 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 33 H 0.13 2.78 7.62 -2.91 -0.02 2.76 16 34 H 0.08 1.98 8.14 -2.39 -0.02 1.97 16 35 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.12 4.57 8.14 -2.40 -0.02 4.56 16 38 H 0.12 4.61 8.14 -2.39 -0.02 4.59 16 39 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 40 H 0.11 3.40 6.41 -2.91 -0.02 3.38 16 Total: -1.00 -82.18 364.58 4.88 -77.30 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.25 Total: 15.63 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 5.28 Total: -11.71 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: -1.33 Total: -65.23 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -0.18 Total: -52.34 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -7.74 SS G_CDS: -1.16 Total: -8.91 kcal Total: -82.18 4.88 -77.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000139054360.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.859 kcal (2) G-P(sol) polarization free energy of solvation -82.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds