Wall clock time and date at job start Sat Apr 11 2020 00:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00358 * 2 1 4 4 O 1.20830 * 119.99583 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00388 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47554 * 184.07185 * 5 3 2 7 7 H 1.09002 * 109.46632 * 54.37828 * 6 5 3 8 8 N 1.46497 * 109.47035 * 294.37817 * 6 5 3 9 9 C 1.34780 * 120.00078 * 153.94645 * 8 6 5 10 10 O 1.21687 * 119.99539 * 354.98067 * 9 8 6 11 11 C 1.46371 * 119.99829 * 174.97542 * 9 8 6 12 12 H 1.08001 * 120.00459 * 0.02562 * 11 9 8 13 13 C 1.40055 * 119.99713 * 180.02562 * 11 9 8 14 14 N 1.30668 * 119.99886 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99981 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46978 * 59.99635 * 15 13 11 17 17 H 1.48494 * 109.47000 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46915 * 299.99675 * 15 13 11 19 19 C 1.50704 * 109.47238 * 174.37660 * 6 5 3 20 20 C 1.38301 * 119.91374 * 79.72912 * 19 6 5 21 21 C 1.38085 * 120.07439 * 179.72513 * 20 19 6 22 22 C 1.38976 * 119.91954 * 0.54627 * 21 20 19 23 23 S 1.76198 * 120.08158 * 179.74915 * 22 21 20 24 24 C 1.81410 * 102.99950 * 359.97438 * 23 22 21 25 25 C 1.38973 * 119.84114 * 359.72604 * 22 21 20 26 26 C 1.38087 * 119.91764 * 0.02562 * 25 22 21 27 27 H 1.08995 * 109.47295 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47202 * 300.00124 * 1 2 3 29 29 H 1.09002 * 109.47044 * 59.99738 * 1 2 3 30 30 H 1.09005 * 109.46938 * 64.07014 * 5 3 2 31 31 H 1.09004 * 109.47370 * 304.07767 * 5 3 2 32 32 H 0.97007 * 120.00377 * 333.95420 * 8 6 5 33 33 H 0.97008 * 120.00136 * 179.97438 * 14 13 11 34 34 H 1.07995 * 119.96467 * 359.97438 * 20 19 6 35 35 H 1.08003 * 120.03749 * 180.26913 * 21 20 19 36 36 H 1.08995 * 109.47006 * 180.02562 * 24 23 22 37 37 H 1.08998 * 109.46671 * 300.00001 * 24 23 22 38 38 H 1.08997 * 109.46623 * 59.99689 * 24 23 22 39 39 H 1.07990 * 120.04271 * 179.97438 * 25 22 21 40 40 H 1.07994 * 119.96072 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0004 2.7384 0.1029 7 1 3.5323 3.1960 0.9744 8 7 3.5881 3.4556 -1.1061 9 6 3.3712 4.7851 -1.0600 10 8 3.4286 5.3743 0.0031 11 6 3.0669 5.5199 -2.2888 12 1 3.0157 4.9969 -3.2323 13 6 2.8421 6.9015 -2.2410 14 7 2.9035 7.5343 -1.0994 15 14 2.4530 7.8393 -3.8090 16 1 1.2122 7.2947 -4.4165 17 1 2.2594 9.2768 -3.4908 18 1 3.5788 7.6920 -4.7661 19 6 5.4993 2.8093 0.2425 20 6 6.3030 2.6787 -0.8754 21 6 7.6766 2.7488 -0.7521 22 6 8.2515 2.9394 0.4988 23 16 10.0039 3.0229 0.6619 24 6 10.5831 2.8098 -1.0440 25 6 7.4408 3.0645 1.6206 26 6 6.0678 2.9986 1.4889 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 3.9531 0.8449 -0.9234 31 1 3.9590 0.7190 0.8521 32 1 3.4710 2.9738 -1.9399 33 1 2.7482 8.4913 -1.0663 34 1 5.8558 2.5258 -1.8464 35 1 8.3035 2.6511 -1.6261 36 1 11.6723 2.8445 -1.0648 37 1 10.2433 1.8469 -1.4254 38 1 10.1817 3.6094 -1.6665 39 1 7.8840 3.2123 2.5942 40 1 5.4371 3.0961 2.3602 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153749448.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:56:12 Heat of formation + Delta-G solvation = -98.168845 kcal Electronic energy + Delta-G solvation = -24865.738799 eV Core-core repulsion = 21157.881311 eV Total energy + Delta-G solvation = -3707.857489 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.33262 -39.14281 -37.21001 -36.18620 -34.36452 -32.36076 -31.17061 -30.47993 -30.07954 -28.89013 -27.50594 -26.15901 -24.12888 -22.41104 -21.40426 -20.45982 -19.36616 -17.74756 -17.36457 -17.23828 -16.35330 -16.24588 -15.60750 -15.38265 -15.10405 -14.52958 -14.20495 -14.02138 -13.92837 -13.87464 -13.37375 -13.25825 -13.12327 -12.74895 -12.42840 -12.29603 -12.15678 -12.03803 -11.86764 -11.29616 -11.23548 -11.06087 -10.94277 -10.68288 -10.62874 -10.39653 -10.23402 -10.20603 -10.11610 -9.35440 -8.79287 -8.70481 -7.60002 -7.49569 -7.24121 -6.11838 -4.56962 1.42534 1.56250 1.65694 2.42656 2.50374 2.86505 3.18506 3.23165 3.24920 3.92774 4.14372 4.64489 4.70580 4.91514 4.93373 4.95819 5.02860 5.07476 5.15932 5.16765 5.23716 5.37219 5.42814 5.50941 5.59537 5.65737 5.72191 5.77230 5.96183 6.02749 6.18403 6.41238 6.47473 6.55241 6.63018 6.95870 7.16295 7.48604 7.93921 8.03553 8.11218 8.36358 9.08852 9.57620 10.67492 10.87176 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.007754 B = 0.004885 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3609.944037 B = 5730.048010 C = 8537.232062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.449 3.551 4 O -0.470 6.470 5 C -0.114 4.114 6 C 0.203 3.797 7 H 0.097 0.903 8 N -0.751 5.751 9 C 0.565 3.435 10 O -0.574 6.574 11 C -0.544 4.544 12 H 0.064 0.936 13 C 0.089 3.911 14 N -0.767 5.767 15 Si 0.905 3.095 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.269 1.269 19 C -0.078 4.078 20 C -0.077 4.077 21 C -0.134 4.134 22 C -0.090 4.090 23 S -0.135 6.135 24 C -0.141 4.141 25 C -0.100 4.100 26 C -0.087 4.087 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.377 0.623 33 H 0.267 0.733 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.123 0.877 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.505 -15.714 0.582 17.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.287 6.287 3 C 0.289 3.711 4 O -0.354 6.354 5 C -0.152 4.152 6 C 0.095 3.905 7 H 0.115 0.885 8 N -0.405 5.405 9 C 0.369 3.631 10 O -0.456 6.456 11 C -0.581 4.581 12 H 0.082 0.918 13 C -0.130 4.130 14 N -0.396 5.396 15 Si 0.730 3.270 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.194 1.194 19 C -0.082 4.082 20 C -0.097 4.097 21 C -0.157 4.157 22 C -0.202 4.202 23 S 0.106 5.894 24 C -0.310 4.310 25 C -0.124 4.124 26 C -0.107 4.107 27 H 0.114 0.886 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.208 0.792 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.137 0.863 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.141 0.859 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.084 -14.591 2.405 16.853 hybrid contribution -1.238 0.201 -2.419 2.725 sum 6.846 -14.390 -0.014 15.935 Atomic orbital electron populations 1.23182 0.76844 1.03049 1.02666 1.86480 1.23091 1.34188 1.84988 1.23739 0.92153 0.81387 0.73788 1.90841 1.66568 1.35670 1.42284 1.21727 0.87813 0.99724 1.05919 1.19179 0.88708 0.88541 0.94040 0.88487 1.46105 1.75904 1.09768 1.08676 1.18070 0.76181 0.78629 0.90178 1.90591 1.55916 1.67196 1.31874 1.20795 1.51515 0.92698 0.93116 0.91770 1.25665 0.93061 0.97796 0.96525 1.70009 1.35349 1.08993 1.25242 0.86491 0.79490 0.78534 0.82533 1.19368 1.20592 1.19402 1.20457 0.96339 0.98252 0.93128 1.20837 0.92314 0.97903 0.98657 1.21057 0.95706 1.03568 0.95415 1.21549 0.95807 1.06121 0.96771 1.85284 0.99678 1.91864 1.12592 1.23620 1.05063 1.05539 0.96738 1.20635 0.93091 1.01637 0.97015 1.20956 0.93989 0.98375 0.97423 0.88576 0.92072 0.91938 0.87606 0.87231 0.79193 0.92176 0.85717 0.86305 0.87759 0.89877 0.89685 0.85870 0.85529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.37 -4.96 10.56 -39.25 -0.41 -5.37 16 3 C 0.45 7.11 7.84 36.00 0.28 7.39 16 4 O -0.47 -9.70 15.07 -18.75 -0.28 -9.98 16 5 C -0.11 -1.53 5.33 -27.89 -0.15 -1.68 16 6 C 0.20 3.71 1.78 -69.08 -0.12 3.59 16 7 H 0.10 2.11 7.19 -51.93 -0.37 1.74 16 8 N -0.75 -16.35 3.39 -56.34 -0.19 -16.54 16 9 C 0.57 16.09 7.71 -12.99 -0.10 15.99 16 10 O -0.57 -18.69 14.63 5.20 0.08 -18.62 16 11 C -0.54 -15.60 9.54 -35.63 -0.34 -15.94 16 12 H 0.06 1.68 7.85 -52.49 -0.41 1.27 16 13 C 0.09 2.54 5.50 -17.37 -0.10 2.45 16 14 N -0.77 -23.54 11.83 55.55 0.66 -22.88 16 15 Si 0.90 20.64 29.56 -169.99 -5.02 15.61 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 C -0.08 -1.33 4.93 -104.57 -0.52 -1.85 16 20 C -0.08 -1.23 9.31 -39.61 -0.37 -1.60 16 21 C -0.13 -1.97 9.36 -39.36 -0.37 -2.34 16 22 C -0.09 -1.34 6.11 -39.04 -0.24 -1.58 16 23 S -0.13 -1.69 22.56 -107.50 -2.43 -4.11 16 24 C -0.14 -1.28 9.15 101.05 0.92 -0.36 16 25 C -0.10 -1.52 9.79 -39.36 -0.39 -1.91 16 26 C -0.09 -1.41 9.66 -39.61 -0.38 -1.79 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 29 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 30 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.38 7.27 8.60 -40.82 -0.35 6.92 16 33 H 0.27 7.50 8.29 -40.82 -0.34 7.16 16 34 H 0.12 1.86 7.72 -52.49 -0.41 1.45 16 35 H 0.12 1.46 5.88 -52.48 -0.31 1.16 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.68 7.75 -51.92 -0.40 0.27 16 38 H 0.08 0.80 7.75 -51.93 -0.40 0.39 16 39 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.13 1.88 8.03 -52.49 -0.42 1.46 16 LS Contribution 361.47 15.07 5.45 5.45 Total: -1.00 -37.73 361.47 -8.12 -45.85 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -5.17 Total: 8.74 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.79 Total: 1.84 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.47 Total: -39.42 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.62 Total: -33.97 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.43 Total: -4.11 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.73 -8.12 -45.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153749448.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.314 kcal (2) G-P(sol) polarization free energy of solvation -37.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds