Wall clock time and date at job start Sat Apr 11 2020 00:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00358 * 2 1 4 4 O 1.20830 * 119.99583 * 0.02562 * 3 2 1 5 5 C 1.50695 * 120.00388 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47554 * 184.07185 * 5 3 2 7 7 H 1.09002 * 109.46632 * 54.37828 * 6 5 3 8 8 N 1.46497 * 109.47035 * 294.37817 * 6 5 3 9 9 C 1.34780 * 120.00078 * 153.94645 * 8 6 5 10 10 O 1.21687 * 119.99539 * 354.98067 * 9 8 6 11 11 C 1.46371 * 119.99829 * 174.97542 * 9 8 6 12 12 H 1.08001 * 120.00459 * 0.02562 * 11 9 8 13 13 C 1.40055 * 119.99713 * 180.02562 * 11 9 8 14 14 N 1.30668 * 119.99886 * 359.97438 * 13 11 9 15 15 Si 1.86803 * 119.99981 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.46978 * 59.99635 * 15 13 11 17 17 H 1.48494 * 109.47000 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46915 * 299.99675 * 15 13 11 19 19 C 1.50704 * 109.47238 * 174.37660 * 6 5 3 20 20 C 1.38301 * 119.91374 * 79.72912 * 19 6 5 21 21 C 1.38085 * 120.07439 * 179.72513 * 20 19 6 22 22 C 1.38976 * 119.91954 * 0.54627 * 21 20 19 23 23 S 1.76198 * 120.08158 * 179.74915 * 22 21 20 24 24 C 1.81410 * 102.99950 * 359.97438 * 23 22 21 25 25 C 1.38973 * 119.84114 * 359.72604 * 22 21 20 26 26 C 1.38087 * 119.91764 * 0.02562 * 25 22 21 27 27 H 1.08995 * 109.47295 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47202 * 300.00124 * 1 2 3 29 29 H 1.09002 * 109.47044 * 59.99738 * 1 2 3 30 30 H 1.09005 * 109.46938 * 64.07014 * 5 3 2 31 31 H 1.09004 * 109.47370 * 304.07767 * 5 3 2 32 32 H 0.97007 * 120.00377 * 333.95420 * 8 6 5 33 33 H 0.97008 * 120.00136 * 179.97438 * 14 13 11 34 34 H 1.07995 * 119.96467 * 359.97438 * 20 19 6 35 35 H 1.08003 * 120.03749 * 180.26913 * 21 20 19 36 36 H 1.08995 * 109.47006 * 180.02562 * 24 23 22 37 37 H 1.08998 * 109.46671 * 300.00001 * 24 23 22 38 38 H 1.08997 * 109.46623 * 59.99689 * 24 23 22 39 39 H 1.07990 * 120.04271 * 179.97438 * 25 22 21 40 40 H 1.07994 * 119.96072 * 180.02562 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0004 2.7384 0.1029 7 1 3.5323 3.1960 0.9744 8 7 3.5881 3.4556 -1.1061 9 6 3.3712 4.7851 -1.0600 10 8 3.4286 5.3743 0.0031 11 6 3.0669 5.5199 -2.2888 12 1 3.0157 4.9969 -3.2323 13 6 2.8421 6.9015 -2.2410 14 7 2.9035 7.5343 -1.0994 15 14 2.4530 7.8393 -3.8090 16 1 1.2122 7.2947 -4.4165 17 1 2.2594 9.2768 -3.4908 18 1 3.5788 7.6920 -4.7661 19 6 5.4993 2.8093 0.2425 20 6 6.3030 2.6787 -0.8754 21 6 7.6766 2.7488 -0.7521 22 6 8.2515 2.9394 0.4988 23 16 10.0039 3.0229 0.6619 24 6 10.5831 2.8098 -1.0440 25 6 7.4408 3.0645 1.6206 26 6 6.0678 2.9986 1.4889 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 3.9531 0.8449 -0.9234 31 1 3.9590 0.7190 0.8521 32 1 3.4710 2.9738 -1.9399 33 1 2.7482 8.4913 -1.0663 34 1 5.8558 2.5258 -1.8464 35 1 8.3035 2.6511 -1.6261 36 1 11.6723 2.8445 -1.0648 37 1 10.2433 1.8469 -1.4254 38 1 10.1817 3.6094 -1.6665 39 1 7.8840 3.2123 2.5942 40 1 5.4371 3.0961 2.3602 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153749448.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:56:12 Heat of formation + Delta-G solvation = -123.119463 kcal Electronic energy + Delta-G solvation = -24866.820739 eV Core-core repulsion = 21157.881311 eV Total energy + Delta-G solvation = -3708.939429 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62817 -40.44285 -39.00138 -37.55556 -36.01829 -34.52282 -32.54916 -31.97153 -31.26947 -29.68581 -28.75780 -28.01414 -25.49531 -23.63394 -22.76919 -21.99755 -21.03528 -19.29183 -18.80485 -18.52619 -17.69556 -17.55679 -17.28965 -16.77439 -16.53742 -15.89584 -15.71690 -15.42951 -15.03730 -14.73995 -14.56989 -14.49927 -14.49717 -14.17493 -13.93579 -13.73694 -13.43883 -13.26281 -13.04120 -12.87337 -12.75740 -12.58580 -12.56261 -12.39548 -12.06009 -12.00283 -11.77164 -11.50534 -11.18283 -10.90293 -10.53436 -9.91062 -9.78164 -9.44370 -8.32003 -8.23781 -6.80728 0.20446 0.44775 0.61131 1.24595 1.37303 1.41699 1.50210 1.52380 1.75747 2.24327 2.53103 2.69475 3.12261 3.60885 3.70993 3.87554 3.88777 4.01670 4.18359 4.28149 4.29207 4.31822 4.32635 4.36078 4.50903 4.51549 4.59728 4.71740 4.79869 4.82863 4.90155 5.10119 5.28217 5.33398 5.35187 5.41959 5.65831 5.92039 5.95714 6.26760 6.32430 6.81321 6.90566 7.60441 8.56749 8.74811 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.007754 B = 0.004885 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3609.944037 B = 5730.048010 C = 8537.232062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.454 3.546 4 O -0.528 6.528 5 C -0.103 4.103 6 C 0.207 3.793 7 H 0.052 0.948 8 N -0.736 5.736 9 C 0.553 3.447 10 O -0.628 6.628 11 C -0.575 4.575 12 H 0.084 0.916 13 C 0.029 3.971 14 N -0.823 5.823 15 Si 0.993 3.007 16 H -0.257 1.257 17 H -0.276 1.276 18 H -0.252 1.252 19 C -0.097 4.097 20 C -0.085 4.085 21 C -0.136 4.136 22 C -0.096 4.096 23 S -0.147 6.147 24 C -0.136 4.136 25 C -0.109 4.109 26 C -0.102 4.102 27 H 0.138 0.862 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.390 0.610 33 H 0.271 0.729 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.137 0.863 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.964 -17.486 -1.727 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.298 3.702 4 O -0.416 6.416 5 C -0.140 4.140 6 C 0.100 3.900 7 H 0.070 0.930 8 N -0.389 5.389 9 C 0.357 3.643 10 O -0.514 6.514 11 C -0.611 4.611 12 H 0.102 0.898 13 C -0.185 4.185 14 N -0.453 5.453 15 Si 0.812 3.188 16 H -0.181 1.181 17 H -0.200 1.200 18 H -0.176 1.176 19 C -0.100 4.100 20 C -0.105 4.105 21 C -0.159 4.159 22 C -0.209 4.209 23 S 0.094 5.906 24 C -0.304 4.304 25 C -0.132 4.132 26 C -0.122 4.122 27 H 0.156 0.844 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.158 0.842 31 H 0.162 0.838 32 H 0.224 0.776 33 H 0.081 0.919 34 H 0.152 0.848 35 H 0.163 0.837 36 H 0.146 0.854 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.155 0.845 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.567 -16.466 0.081 19.044 hybrid contribution -1.624 0.626 -1.646 2.396 sum 7.943 -15.839 -1.565 17.789 Atomic orbital electron populations 1.23483 0.75349 1.05569 1.01985 1.86476 1.24517 1.32530 1.84174 1.24152 0.92920 0.81167 0.72004 1.90837 1.67894 1.37636 1.45278 1.21726 0.86424 0.96743 1.09112 1.19149 0.89601 0.90610 0.90621 0.92962 1.45643 1.74580 1.08159 1.10492 1.18362 0.75771 0.80623 0.89585 1.90545 1.58188 1.69124 1.33542 1.21377 1.51903 0.93830 0.94028 0.89833 1.26918 0.92027 0.98837 1.00740 1.70200 1.36922 1.09571 1.28612 0.85154 0.79955 0.76610 0.77055 1.18137 1.20038 1.17583 1.20332 0.95350 1.00250 0.94116 1.20984 0.93008 0.98047 0.98469 1.21352 0.95458 1.02735 0.96345 1.21844 0.97498 1.04868 0.96662 1.85348 0.97683 1.91537 1.15981 1.23767 1.06453 1.06311 0.93861 1.20847 0.92742 1.01507 0.98120 1.21083 0.94827 0.98851 0.97417 0.84380 0.92792 0.92728 0.84219 0.83811 0.77636 0.91872 0.84831 0.83704 0.85360 0.88418 0.89684 0.84519 0.85531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -9.14 10.56 -51.38 -0.54 -9.69 16 3 C 0.45 14.31 7.84 71.23 0.56 14.86 16 4 O -0.53 -22.68 15.07 21.95 0.33 -22.35 16 5 C -0.10 -2.66 5.33 29.85 0.16 -2.50 16 6 C 0.21 7.79 1.78 44.25 0.08 7.87 16 7 H 0.05 2.45 7.19 -2.39 -0.02 2.43 16 8 N -0.74 -32.86 3.39 -450.39 -1.53 -34.39 16 9 C 0.55 32.73 7.71 86.36 0.67 33.40 16 10 O -0.63 -43.28 14.63 -4.31 -0.06 -43.34 16 11 C -0.57 -33.53 9.54 24.83 0.24 -33.30 16 12 H 0.08 4.36 7.85 -2.91 -0.02 4.34 16 13 C 0.03 1.70 5.50 85.31 0.47 2.17 16 14 N -0.82 -52.39 11.83 21.84 0.26 -52.14 16 15 Si 0.99 42.48 29.56 68.60 2.03 44.51 16 16 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 17 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 19 C -0.10 -3.34 4.93 -19.83 -0.10 -3.44 16 20 C -0.09 -2.64 9.31 22.25 0.21 -2.43 16 21 C -0.14 -3.75 9.36 22.41 0.21 -3.54 16 22 C -0.10 -2.74 6.11 22.62 0.14 -2.60 16 23 S -0.15 -3.38 22.56 -56.49 -1.27 -4.65 16 24 C -0.14 -2.03 9.15 113.37 1.04 -0.99 16 25 C -0.11 -3.29 9.79 22.41 0.22 -3.07 16 26 C -0.10 -3.38 9.66 22.25 0.21 -3.16 16 27 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 1.21 8.13 -2.39 -0.02 1.19 16 29 H 0.05 1.23 8.13 -2.39 -0.02 1.22 16 30 H 0.14 2.74 8.14 -2.38 -0.02 2.72 16 31 H 0.14 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.39 15.07 8.60 -92.70 -0.80 14.27 16 33 H 0.27 15.77 8.29 -92.70 -0.77 15.00 16 34 H 0.13 3.78 7.72 -2.91 -0.02 3.76 16 35 H 0.15 3.14 5.88 -2.91 -0.02 3.13 16 36 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 1.22 7.75 -2.39 -0.02 1.20 16 38 H 0.08 1.32 7.75 -2.39 -0.02 1.30 16 39 H 0.14 3.62 8.06 -2.92 -0.02 3.60 16 40 H 0.13 4.03 8.03 -2.91 -0.02 4.01 16 Total: -1.00 -87.57 361.47 4.78 -82.79 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.27 Total: 34.18 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 5.30 Total: 5.07 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -1.27 Total: -86.52 kcal Atomic # 8 Polarization: -75.10 SS G_CDS: -0.28 Total: -75.38 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.27 Total: -4.65 kcal Total: -87.57 4.78 -82.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153749448.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.333 kcal (2) G-P(sol) polarization free energy of solvation -87.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds