Wall clock time and date at job start Sat Apr 11 2020 00:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37101 * 119.99616 * 2 1 4 4 H 1.08004 * 119.99989 * 204.39197 * 3 2 1 5 5 C 1.38949 * 120.00263 * 24.39802 * 3 2 1 6 6 N 1.31418 * 119.99691 * 12.64926 * 5 3 2 7 7 Si 1.86794 * 119.99986 * 192.65808 * 5 3 2 8 8 H 1.48499 * 109.47554 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47426 * 119.99701 * 7 5 3 10 10 H 1.48505 * 109.46984 * 239.99441 * 7 5 3 11 11 C 1.34780 * 120.00378 * 179.97438 * 2 1 3 12 12 O 1.21294 * 119.99743 * 180.02562 * 11 2 1 13 13 C 1.50696 * 119.99678 * 0.02562 * 11 2 1 14 14 C 1.53003 * 109.46858 * 179.97438 * 13 11 2 15 15 S 1.81400 * 109.47099 * 179.97438 * 14 13 11 16 16 C 1.76195 * 103.00056 * 179.97438 * 15 14 13 17 17 C 1.38928 * 120.03083 * 0.02562 * 16 15 14 18 18 C 1.38125 * 120.02794 * 179.75359 * 17 16 15 19 19 C 1.38712 * 120.17373 * 0.21658 * 18 17 16 20 20 C 1.38988 * 119.94981 * 359.97041 * 19 18 17 21 21 C 1.38649 * 119.89313 * 0.11232 * 20 19 18 22 22 O 1.36115 * 120.77782 * 180.20004 * 20 19 18 23 23 C 1.43167 * 116.72396 * 342.71411 * 22 20 19 24 24 C 1.53472 * 108.22798 * 46.28471 * 23 22 20 25 25 O 1.36240 * 119.30124 * 179.83435 * 19 18 17 26 26 H 1.08996 * 109.47466 * 265.85995 * 1 2 3 27 27 H 1.08997 * 109.47250 * 25.86823 * 1 2 3 28 28 H 1.09004 * 109.46628 * 145.86437 * 1 2 3 29 29 H 0.97004 * 119.99379 * 180.02562 * 6 5 3 30 30 H 1.08996 * 109.47151 * 59.99976 * 13 11 2 31 31 H 1.08995 * 109.47360 * 299.99462 * 13 11 2 32 32 H 1.09002 * 109.47291 * 59.99945 * 14 13 11 33 33 H 1.08995 * 109.46979 * 300.00043 * 14 13 11 34 34 H 1.08003 * 119.98459 * 0.02562 * 17 16 15 35 35 H 1.07996 * 119.91276 * 180.24800 * 18 17 16 36 36 H 1.08004 * 119.99094 * 179.88285 * 21 20 19 37 37 H 1.08997 * 109.71300 * 286.60479 * 23 22 20 38 38 H 1.08997 * 109.71613 * 165.96542 * 23 22 20 39 39 H 1.09003 * 109.70936 * 180.54150 * 24 23 22 40 40 H 1.08996 * 109.74570 * 59.93180 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1581 1.2292 -0.3863 5 6 1.5487 2.3370 0.4970 6 7 0.4345 2.2490 1.1884 7 14 2.3233 4.0073 0.1823 8 1 3.5641 3.8353 -0.6151 9 1 1.3679 4.8629 -0.5664 10 1 2.6538 4.6519 1.4787 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1671 0.0010 13 6 1.3855 -2.4723 0.0005 14 6 2.3798 -3.6351 0.0005 15 16 1.4729 -5.2062 0.0013 16 6 2.7615 -6.4078 0.0004 17 6 4.0903 -6.0022 0.0000 18 6 5.1005 -6.9442 0.0044 19 6 4.7925 -8.2967 0.0049 20 6 3.4643 -8.7060 0.0014 21 6 2.4500 -7.7607 -0.0048 22 8 3.1429 -10.0286 0.0058 23 6 4.1789 -10.9441 -0.3661 24 6 5.4598 -10.5490 0.3812 25 8 5.8030 -9.2106 0.0059 26 1 -0.3634 -0.0742 1.0249 27 1 -0.3633 0.9247 -0.4484 28 1 -0.3633 -0.8507 -0.5767 29 1 0.0143 3.0516 1.5351 30 1 0.7592 -2.5302 -0.8897 31 1 0.7586 -2.5299 0.8903 32 1 3.0065 -3.5774 0.8905 33 1 3.0064 -3.5773 -0.8894 34 1 4.3335 -4.9499 0.0006 35 1 6.1328 -6.6269 0.0081 36 1 1.4173 -8.0769 -0.0094 37 1 4.3491 -10.8897 -1.4413 38 1 3.8902 -11.9582 -0.0899 39 1 6.2688 -11.2264 0.1077 40 1 5.2883 -10.5966 1.4566 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157785275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:56:18 Heat of formation + Delta-G solvation = -93.754145 kcal Electronic energy + Delta-G solvation = -23711.046398 eV Core-core repulsion = 20003.380345 eV Total energy + Delta-G solvation = -3707.666053 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.23407 -40.40824 -38.75497 -38.27870 -36.75438 -34.11205 -33.36737 -32.24344 -31.78894 -29.60788 -28.33372 -26.92887 -25.81701 -25.14199 -23.74784 -22.12040 -20.65098 -19.83373 -18.90941 -18.72713 -18.29869 -18.05874 -17.09313 -16.86533 -16.60506 -16.47182 -15.94970 -15.93983 -15.44840 -15.37053 -15.13067 -15.09642 -14.92339 -14.34551 -14.04887 -13.60681 -13.41722 -13.34676 -13.11426 -13.01550 -12.98361 -12.65801 -12.59996 -12.39014 -12.16461 -12.10872 -12.01820 -11.60781 -11.21172 -11.01048 -10.39219 -10.22433 -9.67390 -9.53721 -8.34871 -8.30449 -5.99953 0.02069 0.14822 0.37170 1.32797 1.36025 1.41635 1.55348 1.98241 2.00624 2.27111 2.28987 2.49021 3.07967 3.11415 3.23833 3.61829 3.76682 3.91312 3.93274 3.99445 4.03962 4.10462 4.12072 4.31656 4.46197 4.50600 4.57890 4.68673 4.71106 4.77288 4.86997 4.88570 5.00572 5.04900 5.11906 5.36634 5.38313 5.44972 5.82967 6.10010 6.32812 6.46913 7.15565 7.45911 8.00799 8.68428 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.036506 B = 0.002152 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.806232 B =13005.971991 C =13660.173534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.463 5.463 3 C -0.343 4.343 4 H 0.071 0.929 5 C -0.004 4.004 6 N -0.896 5.896 7 Si 0.989 3.011 8 H -0.273 1.273 9 H -0.265 1.265 10 H -0.277 1.277 11 C 0.442 3.558 12 O -0.631 6.631 13 C -0.102 4.102 14 C -0.078 4.078 15 S -0.090 6.090 16 C -0.088 4.088 17 C -0.135 4.135 18 C -0.098 4.098 19 C 0.037 3.963 20 C 0.064 3.936 21 C -0.104 4.104 22 O -0.319 6.319 23 C 0.014 3.986 24 C 0.013 3.987 25 O -0.321 6.321 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.274 0.726 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.134 0.866 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.081 0.919 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.735 -25.497 -2.526 25.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.181 5.181 3 C -0.471 4.471 4 H 0.089 0.911 5 C -0.206 4.206 6 N -0.535 5.535 7 Si 0.813 3.187 8 H -0.198 1.198 9 H -0.190 1.190 10 H -0.202 1.202 11 C 0.230 3.770 12 O -0.519 6.519 13 C -0.143 4.143 14 C -0.226 4.226 15 S 0.154 5.846 16 C -0.201 4.201 17 C -0.159 4.159 18 C -0.118 4.118 19 C -0.010 4.010 20 C 0.017 3.983 21 C -0.128 4.128 22 O -0.234 6.234 23 C -0.061 4.061 24 C -0.062 4.062 25 O -0.236 6.236 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.130 0.870 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.152 0.848 35 H 0.168 0.832 36 H 0.166 0.834 37 H 0.100 0.900 38 H 0.175 0.825 39 H 0.174 0.826 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.908 -25.466 -2.432 25.653 hybrid contribution 1.751 1.126 0.100 2.084 sum 3.659 -24.340 -2.333 24.723 Atomic orbital electron populations 1.21480 0.79252 1.01003 1.00764 1.43854 1.06865 1.04658 1.62748 1.19631 1.00410 0.86073 1.40973 0.91081 1.26108 0.97081 1.03014 0.94379 1.70070 1.19688 1.30735 1.32963 0.84938 0.78353 0.77247 0.78171 1.19805 1.18984 1.20223 1.20804 0.87870 0.86068 0.82226 1.90480 1.15979 1.88033 1.57443 1.21149 0.97888 0.89422 1.05838 1.23250 1.00371 0.92843 1.06173 1.85106 1.10294 0.96977 1.92190 1.21493 0.96758 0.96429 1.05466 1.21145 0.91111 1.00330 1.03316 1.20515 1.00860 0.89052 1.01418 1.18947 0.86405 0.90549 1.05132 1.18702 0.91757 0.84682 1.03183 1.20011 0.99305 0.88979 1.04554 1.86288 1.39935 1.12596 1.84569 1.24017 0.86998 0.94516 1.00519 1.24000 1.00366 0.81395 1.00427 1.86322 1.32698 1.19857 1.84714 0.93706 0.92398 0.91157 0.91677 0.87036 0.87744 0.89848 0.89418 0.84793 0.83196 0.83429 0.90034 0.82497 0.82632 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.10 8.44 127.77 1.08 6.17 16 2 N -0.46 -23.74 3.01 -658.90 -1.98 -25.72 16 3 C -0.34 -19.49 9.24 84.04 0.78 -18.71 16 4 H 0.07 4.32 7.45 -2.91 -0.02 4.30 16 5 C 0.00 -0.21 5.04 84.93 0.43 0.21 16 6 N -0.90 -47.48 10.83 21.66 0.23 -47.24 16 7 Si 0.99 42.51 29.57 68.60 2.03 44.53 16 8 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 9 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 10 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 11 C 0.44 21.22 7.63 87.66 0.67 21.89 16 12 O -0.63 -35.01 15.70 -3.07 -0.05 -35.06 16 13 C -0.10 -3.49 4.31 29.85 0.13 -3.36 16 14 C -0.08 -2.47 3.62 71.98 0.26 -2.20 16 15 S -0.09 -2.43 21.92 -56.49 -1.24 -3.67 16 16 C -0.09 -2.37 6.10 22.58 0.14 -2.24 16 17 C -0.14 -3.63 9.36 22.41 0.21 -3.42 16 18 C -0.10 -2.42 9.95 22.36 0.22 -2.19 16 19 C 0.04 0.89 6.50 22.56 0.15 1.03 16 20 C 0.06 1.52 6.49 22.55 0.15 1.67 16 21 C -0.10 -2.59 9.70 22.51 0.22 -2.37 16 22 O -0.32 -6.38 10.41 -82.63 -0.86 -7.24 16 23 C 0.01 0.15 7.26 72.14 0.52 0.67 16 24 C 0.01 0.14 7.26 72.14 0.52 0.66 16 25 O -0.32 -6.50 10.42 -84.07 -0.88 -7.37 16 26 H 0.04 1.98 7.83 -2.39 -0.02 1.96 16 27 H 0.06 2.67 6.80 -2.39 -0.02 2.66 16 28 H 0.07 2.38 6.61 -2.38 -0.02 2.36 16 29 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 30 H 0.11 3.30 7.41 -2.39 -0.02 3.28 16 31 H 0.10 3.31 8.11 -2.39 -0.02 3.29 16 32 H 0.08 2.83 7.70 -2.39 -0.02 2.81 16 33 H 0.09 2.89 7.70 -2.39 -0.02 2.87 16 34 H 0.13 3.70 5.87 -2.91 -0.02 3.68 16 35 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 36 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.16 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.16 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -70.71 346.57 3.79 -66.92 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 1.06 Total: 17.04 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 5.47 Total: -2.18 kcal Atomic # 7 Polarization: -71.22 SS G_CDS: -1.75 Total: -72.97 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -1.79 Total: -49.67 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -1.24 Total: -3.67 kcal Total: -70.71 3.79 -66.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157785275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.838 kcal (2) G-P(sol) polarization free energy of solvation -70.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds