Wall clock time and date at job start Sat Apr 11 2020 00:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46507 * 119.99763 * 2 1 4 4 C 1.50703 * 109.46904 * 269.99407 * 3 2 1 5 5 O 1.20828 * 120.00090 * 354.96955 * 4 3 2 6 6 O 1.34224 * 119.99774 * 174.96759 * 4 3 2 7 7 C 1.45203 * 116.99953 * 185.12185 * 6 4 3 8 8 C 1.52993 * 109.47205 * 184.82811 * 7 6 4 9 9 C 1.50709 * 115.54934 * 66.40528 * 8 7 6 10 10 H 1.07996 * 119.99647 * 270.90756 * 9 8 7 11 11 C 1.37867 * 119.99919 * 90.90938 * 9 8 7 12 12 N 1.31517 * 119.99885 * 181.70807 * 11 9 8 13 13 Si 1.86802 * 120.00453 * 1.70447 * 11 9 8 14 14 H 1.48501 * 109.46965 * 93.06710 * 13 11 9 15 15 H 1.48503 * 109.47199 * 213.06764 * 13 11 9 16 16 H 1.48500 * 109.47064 * 333.06602 * 13 11 9 17 17 C 1.52999 * 117.50187 * 280.73318 * 8 7 6 18 18 C 1.53000 * 117.49856 * 212.06997 * 8 7 6 19 19 C 1.34779 * 120.00269 * 179.97438 * 2 1 3 20 20 O 1.21700 * 120.00120 * 187.57667 * 19 2 1 21 21 C 1.46576 * 119.99628 * 7.57537 * 19 2 1 22 22 C 1.36647 * 125.45635 * 180.11889 * 21 19 2 23 23 C 1.37473 * 113.29846 * 180.02562 * 22 21 19 24 24 C 1.33811 * 115.10220 * 359.97438 * 23 22 21 25 25 S 1.70616 * 110.95385 * 0.02562 * 24 23 22 26 26 H 1.08994 * 109.47733 * 241.77795 * 1 2 3 27 27 H 1.08995 * 109.47409 * 1.78472 * 1 2 3 28 28 H 1.09007 * 109.46889 * 121.77910 * 1 2 3 29 29 H 1.08993 * 109.47322 * 29.99798 * 3 2 1 30 30 H 1.09000 * 109.47020 * 149.99766 * 3 2 1 31 31 H 1.08997 * 109.47394 * 304.83458 * 7 6 4 32 32 H 1.09005 * 109.47161 * 64.82687 * 7 6 4 33 33 H 0.96996 * 120.00276 * 180.02562 * 12 11 9 34 34 H 1.09001 * 117.50023 * 359.97438 * 17 8 7 35 35 H 1.08995 * 117.49866 * 145.02359 * 17 8 7 36 36 H 1.09009 * 117.50097 * 214.97932 * 18 8 7 37 37 H 1.09002 * 117.49959 * 359.97438 * 18 8 7 38 38 H 1.08004 * 123.35469 * 0.27054 * 22 21 19 39 39 H 1.07997 * 122.44850 * 180.02562 * 23 22 21 40 40 H 1.08001 * 124.52847 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4487 1.7038 -1.4209 5 8 2.1375 0.9811 -2.3379 6 8 3.0181 2.8939 -1.6676 7 6 3.1258 3.2975 -3.0583 8 6 3.9023 4.6126 -3.1490 9 6 5.3533 4.5396 -2.7483 10 1 5.6377 4.6981 -1.7186 11 6 6.3175 4.2706 -3.6962 12 7 7.5801 4.1736 -3.3408 13 14 5.8309 4.0437 -5.4854 14 1 5.9406 5.3426 -6.1968 15 1 6.7349 3.0525 -6.1224 16 1 4.4304 3.5555 -5.5594 17 6 3.1454 5.9034 -2.8302 18 6 3.5284 5.5775 -4.2760 19 6 2.1389 -1.1672 0.0005 20 8 3.3479 -1.1717 0.1395 21 6 1.4156 -2.4311 -0.1663 22 6 1.9839 -3.6737 -0.1806 23 6 1.0712 -4.6871 -0.3538 24 6 -0.2009 -4.2905 -0.4767 25 16 -0.3223 -2.5914 -0.3804 26 1 -0.3634 -0.4859 0.9054 27 1 -0.3634 1.0271 -0.0320 28 1 -0.3633 -0.5413 -0.8737 29 1 1.6084 2.0284 0.5138 30 1 3.1498 1.1385 0.5139 31 1 3.6510 2.5258 -3.6210 32 1 2.1280 3.4352 -3.4750 33 1 8.2586 3.9847 -4.0078 34 1 2.0941 5.8158 -2.5561 35 1 3.6970 6.7000 -2.3309 36 1 4.3318 6.1599 -4.7273 37 1 2.7294 5.2752 -4.9530 38 1 3.0441 -3.8432 -0.0633 39 1 1.3597 -5.7272 -0.3873 40 1 -1.0388 -4.9568 -0.6189 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174741785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:56:52 Heat of formation + Delta-G solvation = -65.036116 kcal Electronic energy + Delta-G solvation = -24657.353275 eV Core-core repulsion = 20950.932529 eV Total energy + Delta-G solvation = -3706.420746 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.79913 -40.76884 -38.91432 -38.43687 -37.19826 -36.61189 -34.28290 -31.86481 -30.00819 -28.72754 -27.87474 -27.26798 -25.48042 -23.45974 -22.93218 -21.40863 -21.04952 -20.10327 -19.23397 -18.90703 -18.60205 -17.69352 -17.56588 -17.08297 -16.85978 -16.63652 -16.44484 -15.85744 -15.40971 -14.88033 -14.72830 -14.57370 -14.32672 -14.16324 -13.96259 -13.86621 -13.67230 -13.57865 -13.28893 -13.10762 -12.97577 -12.83205 -12.27078 -12.04475 -11.83787 -11.81118 -11.54171 -11.46494 -11.36990 -10.96381 -10.65908 -10.43167 -10.19332 -9.80175 -9.41225 -8.34078 -6.41600 -0.52187 0.50062 0.99697 1.13023 1.21002 1.28322 1.33999 1.43970 1.48540 1.96190 2.14655 2.31235 2.99382 3.16186 3.41716 3.69149 3.95602 4.02175 4.06579 4.15531 4.20470 4.28103 4.30104 4.35378 4.36658 4.43910 4.53843 4.58139 4.69429 4.80685 4.99548 5.02960 5.10107 5.20672 5.23460 5.35546 5.45922 5.55142 5.63660 6.01465 6.26291 6.66076 6.70657 6.84755 7.27552 8.81827 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.003005 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.435020 B = 9317.002104 C = 9763.542921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.599 5.599 3 C 0.129 3.871 4 C 0.434 3.566 5 O -0.543 6.543 6 O -0.344 6.344 7 C 0.117 3.883 8 C -0.041 4.041 9 C -0.485 4.485 10 H 0.034 0.966 11 C 0.016 3.984 12 N -0.948 5.948 13 Si 0.938 3.062 14 H -0.257 1.257 15 H -0.303 1.303 16 H -0.238 1.238 17 C -0.148 4.148 18 C -0.182 4.182 19 C 0.586 3.414 20 O -0.575 6.575 21 C -0.311 4.311 22 C -0.065 4.065 23 C -0.165 4.165 24 C -0.247 4.247 25 S 0.289 5.711 26 H 0.102 0.898 27 H 0.126 0.874 28 H 0.070 0.930 29 H 0.178 0.822 30 H 0.119 0.881 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.266 0.734 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.137 0.863 39 H 0.161 0.839 40 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.240 -12.593 7.448 29.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.331 5.331 3 C 0.005 3.995 4 C 0.277 3.723 5 O -0.433 6.433 6 O -0.259 6.259 7 C 0.043 3.957 8 C -0.042 4.042 9 C -0.523 4.523 10 H 0.052 0.948 11 C -0.182 4.182 12 N -0.587 5.587 13 Si 0.762 3.238 14 H -0.182 1.182 15 H -0.230 1.230 16 H -0.161 1.161 17 C -0.185 4.185 18 C -0.219 4.219 19 C 0.376 3.624 20 O -0.457 6.457 21 C -0.431 4.431 22 C -0.100 4.100 23 C -0.195 4.195 24 C -0.385 4.385 25 S 0.558 5.442 26 H 0.121 0.879 27 H 0.144 0.856 28 H 0.088 0.912 29 H 0.195 0.805 30 H 0.137 0.863 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.130 0.870 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.127 0.873 38 H 0.155 0.845 39 H 0.178 0.822 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -25.761 -11.804 7.089 29.210 hybrid contribution 2.347 -1.434 -1.028 2.937 sum -23.414 -13.238 6.062 27.572 Atomic orbital electron populations 1.22372 0.76240 1.06740 1.03479 1.47396 1.08691 1.04017 1.72952 1.21173 1.02413 0.87178 0.88730 1.25114 0.73272 0.79381 0.94503 1.90601 1.50078 1.54482 1.48179 1.86534 1.71682 1.35639 1.32055 1.22740 0.98850 0.96092 0.78024 1.19212 0.93836 0.88011 1.03159 1.20429 0.89267 1.47689 0.94893 0.94779 1.25917 0.94497 0.93987 1.03775 1.70043 1.01882 1.50795 1.36027 0.85915 0.79567 0.78583 0.79702 1.18184 1.23030 1.16107 1.22921 1.00189 0.98646 0.96701 1.23076 1.03077 1.03461 0.92288 1.17537 0.86145 0.83658 0.75035 1.90827 1.15712 1.87551 1.51588 1.24494 1.00737 0.96463 1.21392 1.20964 1.01717 0.90801 0.96493 1.20140 0.91960 1.01337 1.06043 1.26368 1.02358 1.04350 1.05376 1.83119 0.98704 0.97937 1.64487 0.87940 0.85583 0.91238 0.80508 0.86307 0.94696 0.90385 0.92548 0.87010 0.89727 0.89901 0.87343 0.84521 0.82192 0.78556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.72 8.79 127.77 1.12 1.85 16 2 N -0.60 -14.60 2.38 -856.01 -2.03 -16.63 16 3 C 0.13 3.32 6.02 85.63 0.52 3.84 16 4 C 0.43 15.74 8.01 71.24 0.57 16.31 16 5 O -0.54 -22.59 16.07 21.96 0.35 -22.24 16 6 O -0.34 -14.15 10.17 -51.36 -0.52 -14.67 16 7 C 0.12 5.03 5.11 71.98 0.37 5.40 16 8 C -0.04 -1.89 1.07 -52.93 -0.06 -1.94 16 9 C -0.49 -28.30 9.41 25.60 0.24 -28.05 16 10 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 11 C 0.02 0.93 5.47 84.65 0.46 1.40 16 12 N -0.95 -61.25 13.96 21.44 0.30 -60.95 16 13 Si 0.94 45.62 24.75 68.60 1.70 47.32 16 14 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 15 H -0.30 -15.09 7.11 99.48 0.71 -14.39 16 16 H -0.24 -10.61 6.05 99.48 0.60 -10.01 16 17 C -0.15 -5.43 9.96 30.62 0.30 -5.12 16 18 C -0.18 -7.01 7.18 30.62 0.22 -6.79 16 19 C 0.59 18.31 7.59 86.42 0.66 18.97 16 20 O -0.58 -23.52 16.39 -4.35 -0.07 -23.59 16 21 C -0.31 -7.69 6.33 24.07 0.15 -7.54 16 22 C -0.06 -1.53 10.01 21.72 0.22 -1.31 16 23 C -0.17 -2.74 10.15 21.08 0.21 -2.52 16 24 C -0.25 -3.13 10.92 66.81 0.73 -2.40 16 25 S 0.29 4.03 17.68 -56.49 -1.00 3.03 16 26 H 0.10 0.84 7.23 -2.39 -0.02 0.82 16 27 H 0.13 0.96 7.81 -2.39 -0.02 0.95 16 28 H 0.07 0.98 5.56 -16.26 -0.09 0.89 16 29 H 0.18 2.55 7.93 -2.39 -0.02 2.53 16 30 H 0.12 3.46 7.33 -2.39 -0.02 3.45 16 31 H 0.03 1.69 7.49 -2.39 -0.02 1.68 16 32 H 0.08 2.82 8.08 -2.38 -0.02 2.80 16 33 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 34 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 35 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.08 3.38 6.65 -2.38 -0.02 3.36 16 37 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 38 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 39 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.20 1.16 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -85.79 350.74 5.32 -80.47 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.88 Total: 15.18 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 5.72 Total: -7.92 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -1.73 Total: -77.58 kcal Atomic # 8 Polarization: -60.26 SS G_CDS: -0.24 Total: -60.50 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.70 Total: 47.32 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.00 Total: 3.03 kcal Total: -85.79 5.32 -80.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174741785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.437 kcal (2) G-P(sol) polarization free energy of solvation -85.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds