Wall clock time and date at job start Sat Apr 11 2020 00:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46571 * 2 1 4 4 N 1.46497 * 109.47036 * 239.99936 * 2 1 3 5 5 C 1.34779 * 120.00139 * 85.00115 * 4 2 1 6 6 O 1.21701 * 119.99681 * 359.97438 * 5 4 2 7 7 C 1.46578 * 120.00200 * 179.97438 * 5 4 2 8 8 C 1.36645 * 125.46297 * 179.97438 * 7 5 4 9 9 C 1.37471 * 113.30267 * 179.97438 * 8 7 5 10 10 C 1.33815 * 115.09628 * 0.02562 * 9 8 7 11 11 S 1.70621 * 110.95727 * 359.72374 * 10 9 8 12 12 C 1.50698 * 109.47048 * 119.99609 * 2 1 3 13 13 O 1.20830 * 119.99817 * 120.00272 * 12 2 1 14 14 O 1.34228 * 120.00279 * 300.00304 * 12 2 1 15 15 C 1.45201 * 116.99901 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.46744 * 184.73825 * 15 14 12 17 17 C 1.50697 * 115.55287 * 301.70631 * 16 15 14 18 18 H 1.08004 * 119.99923 * 95.21199 * 17 16 15 19 19 C 1.37872 * 120.00119 * 275.21724 * 17 16 15 20 20 N 1.31517 * 120.00120 * 7.11976 * 19 17 16 21 21 Si 1.86801 * 120.00106 * 187.12682 * 19 17 16 22 22 H 1.48493 * 109.47298 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46778 * 299.99715 * 21 19 17 24 24 H 1.48504 * 109.47247 * 59.99484 * 21 19 17 25 25 C 1.53002 * 117.49724 * 87.38028 * 16 15 14 26 26 C 1.53003 * 117.49747 * 156.03667 * 16 15 14 27 27 H 1.08998 * 109.47681 * 299.99729 * 1 2 3 28 28 H 1.09004 * 109.47573 * 60.00781 * 1 2 3 29 29 H 1.09008 * 109.47018 * 180.02562 * 1 2 3 30 30 H 0.97001 * 120.00103 * 264.99328 * 4 2 1 31 31 H 1.08007 * 123.34835 * 359.97438 * 8 7 5 32 32 H 1.08005 * 122.45091 * 180.02562 * 9 8 7 33 33 H 1.08009 * 124.51780 * 180.02562 * 10 9 8 34 34 H 1.08995 * 109.47316 * 64.74442 * 15 14 12 35 35 H 1.08997 * 109.46974 * 304.73544 * 15 14 12 36 36 H 0.96999 * 119.99628 * 355.39323 * 20 19 17 37 37 H 1.09007 * 117.49820 * 214.99992 * 25 16 15 38 38 H 1.09001 * 117.49905 * 0.02562 * 25 16 15 39 39 H 1.09007 * 117.49697 * 359.97438 * 26 16 15 40 40 H 1.08995 * 117.49671 * 144.97466 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8572 1.1624 -2.4119 7 6 2.6361 -0.7091 -3.5538 8 6 2.8085 -0.1389 -4.7836 9 6 3.2815 -1.0178 -5.7290 10 6 3.4893 -2.2650 -5.2910 11 16 3.1019 -2.4027 -3.6351 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6927 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9856 3.5897 16 6 1.6609 -0.3907 4.8804 17 6 1.9529 1.0704 5.1057 18 1 1.2303 1.8172 4.8112 19 6 3.1425 1.4540 5.6876 20 7 4.0800 0.5608 5.9179 21 14 3.4227 3.2422 6.1492 22 1 4.7702 3.3919 6.7547 23 1 3.3296 4.0880 4.9321 24 1 2.3905 3.6684 7.1282 25 6 0.3155 -0.9266 5.3740 26 6 1.6047 -1.2979 6.1112 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 2.2491 -1.6318 -1.1526 31 1 2.5945 0.8990 -4.9921 32 1 3.4714 -0.7231 -6.7506 33 1 3.8581 -3.0751 -5.9028 34 1 3.3151 -0.9133 3.6033 35 1 1.9339 -2.0324 3.5125 36 1 3.9099 -0.3775 5.7405 37 1 -0.3584 -0.2223 5.8618 38 1 -0.1656 -1.7033 4.7795 39 1 1.9710 -2.3186 6.0012 40 1 1.7792 -0.8378 7.0838 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174745952.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:56:56 Heat of formation + Delta-G solvation = -67.058278 kcal Electronic energy + Delta-G solvation = -24361.051126 eV Core-core repulsion = 20654.542693 eV Total energy + Delta-G solvation = -3706.508433 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58632 -39.58470 -37.83376 -37.17279 -35.68827 -35.06607 -31.95097 -31.61728 -29.64304 -27.15877 -25.59271 -24.92454 -24.22960 -21.87865 -21.39023 -20.43951 -19.66166 -19.57123 -19.06805 -17.20540 -16.94386 -16.60892 -16.11748 -15.84815 -15.72121 -15.15779 -14.78491 -14.18537 -13.92665 -13.74726 -13.45442 -13.15452 -13.09516 -13.00874 -12.71900 -12.64827 -12.34292 -12.09295 -12.00503 -11.60889 -11.29099 -10.99684 -10.82953 -10.57829 -10.32698 -10.25281 -10.15449 -10.10195 -9.69924 -9.47172 -9.18077 -8.93433 -8.62848 -8.54006 -8.39506 -6.40815 -4.14584 0.18578 1.13905 1.55188 2.07683 2.42161 2.50160 2.97045 3.29582 3.43093 3.43895 3.62812 4.47192 4.48930 4.64300 4.76948 4.95146 4.96578 5.08118 5.13893 5.15654 5.26347 5.58720 5.60240 5.68850 5.69239 5.83556 5.95996 5.97862 6.02146 6.05716 6.11877 6.21270 6.35093 6.48315 6.72907 6.87774 7.10338 7.15852 7.18282 7.87449 8.06336 8.18335 8.38664 8.80757 9.59119 10.98158 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.019392 B = 0.002764 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.575805 B =10126.855235 C =10578.832203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.153 3.847 3 H 0.130 0.870 4 N -0.712 5.712 5 C 0.597 3.403 6 O -0.524 6.524 7 C -0.266 4.266 8 C -0.054 4.054 9 C -0.151 4.151 10 C -0.231 4.231 11 S 0.210 5.790 12 C 0.453 3.547 13 O -0.521 6.521 14 O -0.319 6.319 15 C 0.111 3.889 16 C 0.014 3.986 17 C -0.565 4.565 18 H 0.057 0.943 19 C 0.025 3.975 20 N -0.905 5.905 21 Si 1.067 2.933 22 H -0.283 1.283 23 H -0.286 1.286 24 H -0.287 1.287 25 C -0.190 4.190 26 C -0.168 4.168 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.407 0.593 31 H 0.155 0.845 32 H 0.146 0.854 33 H 0.169 0.831 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.272 0.728 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.043 -6.594 -20.174 21.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.148 0.852 4 N -0.366 5.366 5 C 0.383 3.617 6 O -0.402 6.402 7 C -0.387 4.387 8 C -0.087 4.087 9 C -0.182 4.182 10 C -0.369 4.369 11 S 0.477 5.523 12 C 0.295 3.705 13 O -0.411 6.411 14 O -0.233 6.233 15 C 0.038 3.962 16 C 0.014 3.986 17 C -0.603 4.603 18 H 0.076 0.924 19 C -0.180 4.180 20 N -0.540 5.540 21 Si 0.895 3.105 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.213 1.213 25 C -0.227 4.227 26 C -0.206 4.206 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.244 0.756 31 H 0.173 0.827 32 H 0.164 0.836 33 H 0.187 0.813 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.858 -6.198 -18.482 19.702 hybrid contribution -0.799 -0.709 -1.735 2.038 sum -3.657 -6.906 -20.218 21.675 Atomic orbital electron populations 1.22111 0.91557 1.03220 1.04610 1.20364 0.96416 0.98010 0.80482 0.85220 1.45677 1.67808 1.14591 1.08573 1.16859 0.77277 0.86035 0.81536 1.90853 1.50104 1.14692 1.84544 1.24567 1.16307 0.98920 0.98863 1.20823 0.96240 1.01508 0.90171 1.20061 1.04096 0.92454 1.01630 1.25388 1.08365 1.02377 1.00773 1.83276 1.58394 1.05992 1.04626 1.23426 0.77793 0.82835 0.86401 1.90610 1.36309 1.26537 1.87665 1.86548 1.68050 1.55030 1.13665 1.22977 0.98755 0.91853 0.82616 1.19050 0.95556 0.95766 0.88268 1.21208 1.06351 0.88733 1.43994 0.92437 1.25843 0.92047 1.06379 0.93723 1.70781 1.33176 1.03515 1.46480 0.83560 0.76177 0.74075 0.76656 1.20801 1.21262 1.21334 1.22921 0.91734 1.02815 1.05210 1.22801 1.01461 0.98345 0.97975 0.89241 0.90578 0.91941 0.75649 0.82712 0.83613 0.81303 0.91306 0.93800 0.91694 0.89661 0.91309 0.91242 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.42 37.16 0.35 -1.62 16 2 C 0.15 2.28 3.09 -69.09 -0.21 2.07 16 3 H 0.13 2.01 7.58 -51.93 -0.39 1.62 16 4 N -0.71 -9.67 4.95 -56.28 -0.28 -9.95 16 5 C 0.60 8.27 7.75 -12.90 -0.10 8.17 16 6 O -0.52 -8.65 16.50 5.19 0.09 -8.57 16 7 C -0.27 -3.01 6.45 -36.80 -0.24 -3.24 16 8 C -0.05 -0.53 10.01 -40.44 -0.40 -0.93 16 9 C -0.15 -1.16 10.15 -41.41 -0.42 -1.58 16 10 C -0.23 -1.66 10.92 29.18 0.32 -1.34 16 11 S 0.21 1.82 22.16 -107.50 -2.38 -0.56 16 12 C 0.45 8.31 7.32 36.00 0.26 8.57 16 13 O -0.52 -10.25 15.53 -18.75 -0.29 -10.54 16 14 O -0.32 -6.76 9.93 -39.25 -0.39 -7.15 16 15 C 0.11 2.53 5.30 37.16 0.20 2.72 16 16 C 0.01 0.34 1.20 -155.66 -0.19 0.15 16 17 C -0.57 -15.33 8.64 -34.44 -0.30 -15.63 16 18 H 0.06 1.58 7.82 -52.48 -0.41 1.17 16 19 C 0.03 0.70 5.39 -17.82 -0.10 0.61 16 20 N -0.90 -26.27 13.57 55.43 0.75 -25.52 16 21 Si 1.07 24.69 29.91 -169.99 -5.08 19.60 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 25 C -0.19 -3.97 9.94 -26.69 -0.27 -4.23 16 26 C -0.17 -3.72 8.75 -26.69 -0.23 -3.95 16 27 H 0.09 1.14 8.11 -51.93 -0.42 0.72 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.41 5.15 6.91 -40.82 -0.28 4.87 16 31 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.15 0.77 8.06 -52.48 -0.42 0.34 16 33 H 0.17 0.77 8.06 -52.48 -0.42 0.35 16 34 H 0.07 1.71 7.76 -51.93 -0.40 1.30 16 35 H 0.04 0.91 8.00 -51.93 -0.42 0.50 16 36 H 0.27 7.78 6.15 -40.82 -0.25 7.53 16 37 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.07 1.40 8.14 -51.92 -0.42 0.97 16 40 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 363.56 15.07 5.48 5.48 Total: -1.00 -31.85 363.56 -8.61 -40.46 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.18 Total: 6.97 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -1.33 Total: -10.24 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.47 Total: -35.47 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.60 Total: -26.26 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.08 Total: 19.60 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.38 Total: -0.56 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.85 -8.61 -40.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174745952.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.595 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds