Wall clock time and date at job start Sat Apr 11 2020 00:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46571 * 2 1 4 4 N 1.46497 * 109.47036 * 239.99936 * 2 1 3 5 5 C 1.34779 * 120.00139 * 85.00115 * 4 2 1 6 6 O 1.21701 * 119.99681 * 359.97438 * 5 4 2 7 7 C 1.46578 * 120.00200 * 179.97438 * 5 4 2 8 8 C 1.36645 * 125.46297 * 179.97438 * 7 5 4 9 9 C 1.37471 * 113.30267 * 179.97438 * 8 7 5 10 10 C 1.33815 * 115.09628 * 0.02562 * 9 8 7 11 11 S 1.70621 * 110.95727 * 359.72374 * 10 9 8 12 12 C 1.50698 * 109.47048 * 119.99609 * 2 1 3 13 13 O 1.20830 * 119.99817 * 120.00272 * 12 2 1 14 14 O 1.34228 * 120.00279 * 300.00304 * 12 2 1 15 15 C 1.45201 * 116.99901 * 180.02562 * 14 12 2 16 16 C 1.53001 * 109.46744 * 184.73825 * 15 14 12 17 17 C 1.50697 * 115.55287 * 301.70631 * 16 15 14 18 18 H 1.08004 * 119.99923 * 95.21199 * 17 16 15 19 19 C 1.37872 * 120.00119 * 275.21724 * 17 16 15 20 20 N 1.31517 * 120.00120 * 7.11976 * 19 17 16 21 21 Si 1.86801 * 120.00106 * 187.12682 * 19 17 16 22 22 H 1.48493 * 109.47298 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46778 * 299.99715 * 21 19 17 24 24 H 1.48504 * 109.47247 * 59.99484 * 21 19 17 25 25 C 1.53002 * 117.49724 * 87.38028 * 16 15 14 26 26 C 1.53003 * 117.49747 * 156.03667 * 16 15 14 27 27 H 1.08998 * 109.47681 * 299.99729 * 1 2 3 28 28 H 1.09004 * 109.47573 * 60.00781 * 1 2 3 29 29 H 1.09008 * 109.47018 * 180.02562 * 1 2 3 30 30 H 0.97001 * 120.00103 * 264.99328 * 4 2 1 31 31 H 1.08007 * 123.34835 * 359.97438 * 8 7 5 32 32 H 1.08005 * 122.45091 * 180.02562 * 9 8 7 33 33 H 1.08009 * 124.51780 * 180.02562 * 10 9 8 34 34 H 1.08995 * 109.47316 * 64.74442 * 15 14 12 35 35 H 1.08997 * 109.46974 * 304.73544 * 15 14 12 36 36 H 0.96999 * 119.99628 * 355.39323 * 20 19 17 37 37 H 1.09007 * 117.49820 * 214.99992 * 25 16 15 38 38 H 1.09001 * 117.49905 * 0.02562 * 25 16 15 39 39 H 1.09007 * 117.49697 * 359.97438 * 26 16 15 40 40 H 1.08995 * 117.49671 * 144.97466 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8572 1.1624 -2.4119 7 6 2.6361 -0.7091 -3.5538 8 6 2.8085 -0.1389 -4.7836 9 6 3.2815 -1.0178 -5.7290 10 6 3.4893 -2.2650 -5.2910 11 16 3.1019 -2.4027 -3.6351 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6927 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9856 3.5897 16 6 1.6609 -0.3907 4.8804 17 6 1.9529 1.0704 5.1057 18 1 1.2303 1.8172 4.8112 19 6 3.1425 1.4540 5.6876 20 7 4.0800 0.5608 5.9179 21 14 3.4227 3.2422 6.1492 22 1 4.7702 3.3919 6.7547 23 1 3.3296 4.0880 4.9321 24 1 2.3905 3.6684 7.1282 25 6 0.3155 -0.9266 5.3740 26 6 1.6047 -1.2979 6.1112 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 2.2491 -1.6318 -1.1526 31 1 2.5945 0.8990 -4.9921 32 1 3.4714 -0.7231 -6.7506 33 1 3.8581 -3.0751 -5.9028 34 1 3.3151 -0.9133 3.6033 35 1 1.9339 -2.0324 3.5125 36 1 3.9099 -0.3775 5.7405 37 1 -0.3584 -0.2223 5.8618 38 1 -0.1656 -1.7033 4.7795 39 1 1.9710 -2.3186 6.0012 40 1 1.7792 -0.8378 7.0838 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174745952.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:56:56 Heat of formation + Delta-G solvation = -85.362741 kcal Electronic energy + Delta-G solvation = -24361.844867 eV Core-core repulsion = 20654.542693 eV Total energy + Delta-G solvation = -3707.302174 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.97782 -40.81437 -39.00055 -38.47435 -37.29979 -36.32332 -34.00557 -32.68974 -30.45565 -28.83972 -26.99240 -26.46525 -25.36384 -23.21291 -22.82608 -21.70253 -21.53025 -20.56863 -19.93268 -18.95642 -18.39804 -17.89594 -17.58192 -16.99049 -16.73547 -16.28740 -16.10107 -15.68803 -15.58444 -14.96898 -14.82121 -14.61241 -14.49913 -13.99866 -13.84695 -13.72357 -13.60454 -13.43796 -13.21928 -12.91751 -12.75394 -12.66466 -12.27852 -11.96644 -11.96419 -11.87220 -11.76757 -11.46304 -11.39077 -10.62883 -10.53758 -10.47182 -10.36529 -9.92011 -9.58998 -8.56959 -6.30598 -0.55696 0.43698 0.90298 0.92165 1.17683 1.36875 1.54805 1.60977 1.80214 2.00774 2.06615 2.57280 3.10522 3.18788 3.42759 3.63682 3.82394 3.92297 3.94143 4.11999 4.17147 4.24603 4.31823 4.40823 4.50954 4.52127 4.60262 4.66389 4.79410 4.96682 4.97391 5.00804 5.08134 5.17304 5.18191 5.33836 5.40996 5.44227 6.12524 6.13112 6.21978 6.51025 6.68315 6.83569 7.49452 8.83319 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.019392 B = 0.002764 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.575805 B =10126.855235 C =10578.832203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.159 3.841 3 H 0.122 0.878 4 N -0.709 5.709 5 C 0.597 3.403 6 O -0.560 6.560 7 C -0.306 4.306 8 C -0.049 4.049 9 C -0.159 4.159 10 C -0.212 4.212 11 S 0.218 5.782 12 C 0.454 3.546 13 O -0.535 6.535 14 O -0.332 6.332 15 C 0.123 3.877 16 C -0.022 4.022 17 C -0.574 4.574 18 H 0.046 0.954 19 C -0.020 4.020 20 N -0.932 5.932 21 Si 1.107 2.893 22 H -0.287 1.287 23 H -0.276 1.276 24 H -0.269 1.269 25 C -0.163 4.163 26 C -0.166 4.166 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.411 0.589 31 H 0.153 0.847 32 H 0.174 0.826 33 H 0.202 0.798 34 H 0.036 0.964 35 H 0.063 0.937 36 H 0.264 0.736 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.747 -7.519 -22.021 23.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.053 3.947 3 H 0.139 0.861 4 N -0.364 5.364 5 C 0.386 3.614 6 O -0.440 6.440 7 C -0.426 4.426 8 C -0.084 4.084 9 C -0.189 4.189 10 C -0.350 4.350 11 S 0.485 5.515 12 C 0.298 3.702 13 O -0.425 6.425 14 O -0.246 6.246 15 C 0.049 3.951 16 C -0.023 4.023 17 C -0.612 4.612 18 H 0.065 0.935 19 C -0.220 4.220 20 N -0.568 5.568 21 Si 0.930 3.070 22 H -0.212 1.212 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.200 4.200 26 C -0.203 4.203 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.094 0.906 30 H 0.249 0.751 31 H 0.171 0.829 32 H 0.191 0.809 33 H 0.219 0.781 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.107 0.893 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.581 -7.153 -20.340 21.857 hybrid contribution -0.569 -0.495 -1.280 1.486 sum -4.150 -7.648 -21.621 23.306 Atomic orbital electron populations 1.22073 0.89454 1.04207 1.04885 1.20361 0.97910 0.97048 0.79363 0.86051 1.45655 1.67867 1.14711 1.08121 1.17223 0.76458 0.85705 0.82050 1.90821 1.51872 1.16171 1.85166 1.24417 1.19177 1.00698 0.98314 1.21072 0.95223 1.01930 0.90190 1.20297 1.03932 0.92167 1.02483 1.25831 1.06187 1.03064 0.99909 1.83248 1.58164 1.03970 1.06100 1.24045 0.77203 0.82687 0.86312 1.90594 1.36879 1.27343 1.87726 1.86547 1.68330 1.55415 1.14345 1.22640 0.96724 0.92842 0.82896 1.19121 0.98679 0.94872 0.89586 1.21480 1.05917 0.90492 1.43265 0.93539 1.27042 0.92136 1.09260 0.93574 1.70875 1.34007 1.03465 1.48480 0.83051 0.76279 0.70544 0.77156 1.21216 1.20169 1.19419 1.22954 0.90573 1.02685 1.03803 1.22748 1.02492 0.98741 0.96336 0.89407 0.89776 0.90595 0.75086 0.82892 0.80866 0.78108 0.94524 0.91911 0.92565 0.89568 0.88380 0.89287 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.42 71.98 0.68 -2.93 16 2 C 0.16 4.76 3.09 44.24 0.14 4.89 16 3 H 0.12 3.86 7.58 -2.38 -0.02 3.85 16 4 N -0.71 -19.22 4.95 -450.17 -2.23 -21.45 16 5 C 0.60 16.67 7.75 86.42 0.67 17.34 16 6 O -0.56 -18.87 16.50 -4.35 -0.07 -18.94 16 7 C -0.31 -6.73 6.45 24.07 0.16 -6.57 16 8 C -0.05 -0.91 10.01 21.72 0.22 -0.70 16 9 C -0.16 -1.99 10.15 21.08 0.21 -1.78 16 10 C -0.21 -2.36 10.92 66.81 0.73 -1.63 16 11 S 0.22 3.42 22.16 -56.49 -1.25 2.17 16 12 C 0.45 16.67 7.32 71.24 0.52 17.20 16 13 O -0.53 -21.04 15.53 21.95 0.34 -20.70 16 14 O -0.33 -14.12 9.93 -51.40 -0.51 -14.63 16 15 C 0.12 5.59 5.30 71.98 0.38 5.97 16 16 C -0.02 -1.06 1.20 -52.93 -0.06 -1.12 16 17 C -0.57 -31.44 8.64 25.60 0.22 -31.22 16 18 H 0.05 2.58 7.82 -2.91 -0.02 2.55 16 19 C -0.02 -1.14 5.39 84.65 0.46 -0.68 16 20 N -0.93 -55.21 13.57 21.45 0.29 -54.92 16 21 Si 1.11 50.01 29.91 68.60 2.05 52.06 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 C -0.16 -6.54 9.94 30.62 0.30 -6.23 16 26 C -0.17 -7.22 8.75 30.62 0.27 -6.95 16 27 H 0.09 2.18 8.11 -2.39 -0.02 2.16 16 28 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.08 1.63 8.14 -2.38 -0.02 1.62 16 30 H 0.41 10.31 6.91 -92.71 -0.64 9.67 16 31 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 32 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 33 H 0.20 0.92 8.06 -2.91 -0.02 0.89 16 34 H 0.04 1.87 7.76 -2.39 -0.02 1.85 16 35 H 0.06 2.57 8.00 -2.39 -0.02 2.55 16 36 H 0.26 15.53 6.15 -92.71 -0.57 14.96 16 37 H 0.09 3.42 8.14 -2.38 -0.02 3.40 16 38 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 39 H 0.09 3.48 8.14 -2.38 -0.02 3.46 16 40 H 0.07 3.38 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -69.54 363.56 4.14 -65.41 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.63 Total: 25.41 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 4.89 Total: -14.41 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -1.94 Total: -76.37 kcal Atomic # 8 Polarization: -54.03 SS G_CDS: -0.24 Total: -54.27 kcal Atomic # 14 Polarization: 50.01 SS G_CDS: 2.05 Total: 52.06 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -1.25 Total: 2.17 kcal Total: -69.54 4.14 -65.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174745952.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.956 kcal (2) G-P(sol) polarization free energy of solvation -69.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds