Wall clock time and date at job start Sat Apr 11 2020 00:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00270 * 2 1 4 4 N 1.34777 * 119.99782 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00089 * 179.97438 * 4 2 1 6 6 C 1.52993 * 109.47531 * 179.97438 * 5 4 2 7 7 H 1.09003 * 109.47433 * 305.00102 * 6 5 4 8 8 O 1.45198 * 109.47138 * 65.00041 * 6 5 4 9 9 C 1.34230 * 117.00173 * 210.00059 * 8 6 5 10 10 O 1.20822 * 120.00010 * 359.97438 * 9 8 6 11 11 C 1.50706 * 119.99763 * 180.02562 * 9 8 6 12 12 S 1.81003 * 109.46853 * 179.97438 * 11 9 8 13 13 C 1.76196 * 99.99846 * 179.97438 * 12 11 9 14 14 H 1.07998 * 120.00030 * 359.97438 * 13 12 11 15 15 C 1.38802 * 119.99637 * 180.02562 * 13 12 11 16 16 N 1.31628 * 120.00513 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99570 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46946 * 90.00549 * 17 15 13 19 19 H 1.48504 * 109.46826 * 210.00017 * 17 15 13 20 20 H 1.48496 * 109.47486 * 329.99998 * 17 15 13 21 21 C 1.50706 * 109.47619 * 184.99934 * 6 5 4 22 22 C 1.38234 * 119.99997 * 279.73075 * 21 6 5 23 23 C 1.38235 * 119.99596 * 179.78366 * 22 21 6 24 24 C 1.38234 * 120.00149 * 0.43645 * 23 22 21 25 25 C 1.38235 * 120.00059 * 359.81979 * 24 23 22 26 26 C 1.38231 * 119.99811 * 359.96908 * 25 24 23 27 27 H 1.08997 * 109.47010 * 269.99833 * 1 2 3 28 28 H 1.08998 * 109.47534 * 29.99476 * 1 2 3 29 29 H 1.09008 * 109.47552 * 149.99844 * 1 2 3 30 30 H 0.97004 * 120.00190 * 359.97438 * 4 2 1 31 31 H 1.09003 * 109.47285 * 59.99516 * 5 4 2 32 32 H 1.09001 * 109.47586 * 300.00391 * 5 4 2 33 33 H 1.09000 * 109.47318 * 299.99486 * 11 9 8 34 34 H 1.09000 * 109.47161 * 60.00117 * 11 9 8 35 35 H 0.96995 * 120.00407 * 180.02562 * 16 15 13 36 36 H 1.07992 * 120.00001 * 359.97438 * 22 21 6 37 37 H 1.08004 * 119.99732 * 180.27269 * 23 22 21 38 38 H 1.08001 * 119.99708 * 179.82981 * 24 23 22 39 39 H 1.08000 * 119.99977 * 179.97438 * 25 24 23 40 40 H 1.08008 * 119.99855 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1673 -0.0011 6 6 4.1558 -2.6097 -0.0010 7 1 3.7215 -3.1486 0.8411 8 8 3.7712 -3.2592 -1.2414 9 6 3.5621 -4.5843 -1.1961 10 8 3.6964 -5.1819 -0.1546 11 6 3.1609 -5.3269 -2.4446 12 16 2.9564 -7.0841 -2.0620 13 6 2.5004 -7.6923 -3.6515 14 1 2.4249 -7.0136 -4.4881 15 6 2.2372 -9.0437 -3.8282 16 7 2.3278 -9.8707 -2.8082 17 14 1.7531 -9.6883 -5.5133 18 1 2.9737 -10.0825 -6.2619 19 1 0.8664 -10.8691 -5.3555 20 1 1.0346 -8.6262 -6.2620 21 6 5.6578 -2.6116 0.1223 22 6 6.4429 -2.3762 -0.9908 23 6 7.8205 -2.3735 -0.8768 24 6 8.4132 -2.6151 0.3484 25 6 7.6281 -2.8558 1.4605 26 6 6.2504 -2.8542 1.3474 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6958 -2.0073 -0.0005 31 1 4.0095 -0.6536 0.8888 32 1 4.0089 -0.6532 -0.8910 33 1 2.2200 -4.9246 -2.8202 34 1 3.9352 -5.2082 -3.2026 35 1 2.1442 -10.8151 -2.9317 36 1 5.9800 -2.1914 -1.9488 37 1 8.4339 -2.1852 -1.7456 38 1 9.4896 -2.6157 0.4369 39 1 8.0911 -3.0450 2.4177 40 1 5.6370 -3.0418 2.2163 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177978716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:57:13 Heat of formation + Delta-G solvation = -103.785267 kcal Electronic energy + Delta-G solvation = -24104.141685 eV Core-core repulsion = 20396.040650 eV Total energy + Delta-G solvation = -3708.101035 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.71234 -39.58861 -39.05128 -36.60129 -34.88330 -32.58665 -32.53188 -31.02922 -30.42710 -29.75806 -27.81929 -25.60705 -23.78366 -22.83551 -21.90249 -20.87974 -20.40569 -18.05593 -17.53124 -17.39518 -16.93897 -16.46174 -15.98599 -15.70776 -15.40857 -15.04839 -14.89079 -14.78351 -14.17976 -13.84200 -13.65049 -13.52639 -13.48388 -13.10457 -12.81845 -12.74040 -12.57122 -12.39322 -12.27704 -11.70324 -11.54200 -11.15424 -11.11100 -11.08798 -10.86155 -10.69161 -10.14535 -10.09850 -9.95250 -9.35215 -9.15969 -9.03319 -8.96139 -8.42058 -6.65875 -6.31993 -4.05113 1.11552 1.28748 2.42863 2.49847 2.54624 2.95786 3.17287 3.19449 3.24932 3.42385 3.63083 4.10237 4.42268 4.48226 4.67203 4.70059 4.88523 4.91842 4.95979 5.00493 5.03256 5.04151 5.15323 5.30846 5.35632 5.40582 5.49475 5.61192 5.64787 5.69499 5.78013 5.90788 6.00349 6.11619 6.30592 6.34024 6.37940 6.60815 6.83816 7.23957 7.50815 7.98289 8.04622 8.25590 9.13730 10.75452 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.010315 B = 0.003417 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.758569 B = 8192.420106 C =10181.007654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.513 3.487 3 O -0.551 6.551 4 N -0.729 5.729 5 C 0.131 3.869 6 C 0.120 3.880 7 H 0.100 0.900 8 O -0.350 6.350 9 C 0.478 3.522 10 O -0.481 6.481 11 C -0.129 4.129 12 S -0.057 6.057 13 C -0.537 4.537 14 H 0.076 0.924 15 C 0.076 3.924 16 N -0.867 5.867 17 Si 0.921 3.079 18 H -0.276 1.276 19 H -0.281 1.281 20 H -0.271 1.271 21 C -0.110 4.110 22 C -0.092 4.092 23 C -0.122 4.122 24 C -0.113 4.113 25 C -0.122 4.122 26 C -0.096 4.096 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.405 0.595 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.270 0.730 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.957 17.422 6.501 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.300 3.700 3 O -0.429 6.429 4 N -0.381 5.381 5 C 0.007 3.993 6 C 0.064 3.936 7 H 0.118 0.882 8 O -0.268 6.268 9 C 0.319 3.681 10 O -0.366 6.366 11 C -0.276 4.276 12 S 0.170 5.830 13 C -0.685 4.685 14 H 0.094 0.906 15 C -0.134 4.134 16 N -0.502 5.502 17 Si 0.747 3.253 18 H -0.202 1.202 19 H -0.207 1.207 20 H -0.196 1.196 21 C -0.110 4.110 22 C -0.111 4.111 23 C -0.140 4.140 24 C -0.131 4.131 25 C -0.140 4.140 26 C -0.114 4.114 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.240 0.760 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.546 17.281 7.893 19.534 hybrid contribution -0.559 -0.381 -2.143 2.247 sum 3.986 16.900 5.751 18.291 Atomic orbital electron populations 1.21889 0.91389 1.05161 1.04869 1.20827 0.90731 0.83181 0.75265 1.90723 1.70903 1.31391 1.49843 1.46063 1.07076 1.09305 1.75701 1.21435 0.80221 0.93752 1.03913 1.21633 0.91691 0.92749 0.87540 0.88172 1.86644 1.79706 1.23768 1.36679 1.23385 0.73457 0.80093 0.91163 1.90670 1.46136 1.67566 1.32198 1.23309 1.05167 1.03578 0.95581 1.85424 1.90122 0.91511 1.15960 1.22838 1.54516 0.96164 0.95012 0.90594 1.24994 0.94665 0.95633 0.98114 1.70001 1.45683 1.04234 1.30286 0.86132 0.78596 0.78483 0.82110 1.20164 1.20679 1.19560 1.19830 0.93952 1.02617 0.94636 1.21050 0.93683 0.97912 0.98406 1.21169 0.94706 1.00384 0.97780 1.21220 0.99924 0.98997 0.92963 1.21114 0.93539 1.00464 0.98913 1.21002 0.95162 0.98448 0.96834 0.88778 0.88802 0.89853 0.76013 0.89260 0.89950 0.87935 0.87960 0.92029 0.85392 0.85786 0.85977 0.85788 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.30 36.00 0.37 -0.84 16 2 C 0.51 5.60 7.94 -10.99 -0.09 5.52 16 3 O -0.55 -8.27 17.10 5.55 0.09 -8.18 16 4 N -0.73 -7.33 5.51 -60.30 -0.33 -7.66 16 5 C 0.13 1.41 5.33 -4.05 -0.02 1.38 16 6 C 0.12 1.45 2.18 -27.88 -0.06 1.39 16 7 H 0.10 1.25 7.02 -51.93 -0.36 0.88 16 8 O -0.35 -4.98 9.15 -39.26 -0.36 -5.34 16 9 C 0.48 8.46 7.94 36.01 0.29 8.75 16 10 O -0.48 -9.81 15.08 -18.75 -0.28 -10.09 16 11 C -0.13 -2.48 6.27 36.01 0.23 -2.25 16 12 S -0.06 -1.45 20.58 -107.50 -2.21 -3.67 16 13 C -0.54 -14.70 9.50 30.94 0.29 -14.41 16 14 H 0.08 1.97 7.80 -52.49 -0.41 1.56 16 15 C 0.08 2.08 5.49 -17.43 -0.10 1.98 16 16 N -0.87 -25.27 13.22 55.49 0.73 -24.54 16 17 Si 0.92 20.74 29.55 -169.99 -5.02 15.72 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 C -0.11 -1.35 4.95 -104.62 -0.52 -1.87 16 22 C -0.09 -1.11 9.36 -39.58 -0.37 -1.48 16 23 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 24 C -0.11 -1.14 10.05 -39.58 -0.40 -1.54 16 25 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 26 C -0.10 -1.10 9.67 -39.58 -0.38 -1.49 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.41 3.56 8.47 -40.82 -0.35 3.21 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 34 H 0.10 1.87 8.14 -51.92 -0.42 1.44 16 35 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.13 1.47 7.77 -52.49 -0.41 1.06 16 37 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.12 1.24 8.04 -52.48 -0.42 0.82 16 LS Contribution 369.16 15.07 5.56 5.56 Total: -1.00 -34.37 369.16 -8.68 -43.06 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.31 Total: 3.37 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -1.55 Total: -8.24 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.40 Total: -32.20 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.55 Total: -23.61 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.37 -8.68 -43.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177978716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.730 kcal (2) G-P(sol) polarization free energy of solvation -34.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds