Wall clock time and date at job start Sat Apr 11 2020 00:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00270 * 2 1 4 4 N 1.34777 * 119.99782 * 180.02562 * 2 1 3 5 5 C 1.46496 * 120.00089 * 179.97438 * 4 2 1 6 6 C 1.52993 * 109.47531 * 179.97438 * 5 4 2 7 7 H 1.09003 * 109.47433 * 305.00102 * 6 5 4 8 8 O 1.45198 * 109.47138 * 65.00041 * 6 5 4 9 9 C 1.34230 * 117.00173 * 210.00059 * 8 6 5 10 10 O 1.20822 * 120.00010 * 359.97438 * 9 8 6 11 11 C 1.50706 * 119.99763 * 180.02562 * 9 8 6 12 12 S 1.81003 * 109.46853 * 179.97438 * 11 9 8 13 13 C 1.76196 * 99.99846 * 179.97438 * 12 11 9 14 14 H 1.07998 * 120.00030 * 359.97438 * 13 12 11 15 15 C 1.38802 * 119.99637 * 180.02562 * 13 12 11 16 16 N 1.31628 * 120.00513 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99570 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46946 * 90.00549 * 17 15 13 19 19 H 1.48504 * 109.46826 * 210.00017 * 17 15 13 20 20 H 1.48496 * 109.47486 * 329.99998 * 17 15 13 21 21 C 1.50706 * 109.47619 * 184.99934 * 6 5 4 22 22 C 1.38234 * 119.99997 * 279.73075 * 21 6 5 23 23 C 1.38235 * 119.99596 * 179.78366 * 22 21 6 24 24 C 1.38234 * 120.00149 * 0.43645 * 23 22 21 25 25 C 1.38235 * 120.00059 * 359.81979 * 24 23 22 26 26 C 1.38231 * 119.99811 * 359.96908 * 25 24 23 27 27 H 1.08997 * 109.47010 * 269.99833 * 1 2 3 28 28 H 1.08998 * 109.47534 * 29.99476 * 1 2 3 29 29 H 1.09008 * 109.47552 * 149.99844 * 1 2 3 30 30 H 0.97004 * 120.00190 * 359.97438 * 4 2 1 31 31 H 1.09003 * 109.47285 * 59.99516 * 5 4 2 32 32 H 1.09001 * 109.47586 * 300.00391 * 5 4 2 33 33 H 1.09000 * 109.47318 * 299.99486 * 11 9 8 34 34 H 1.09000 * 109.47161 * 60.00117 * 11 9 8 35 35 H 0.96995 * 120.00407 * 180.02562 * 16 15 13 36 36 H 1.07992 * 120.00001 * 359.97438 * 22 21 6 37 37 H 1.08004 * 119.99732 * 180.27269 * 23 22 21 38 38 H 1.08001 * 119.99708 * 179.82981 * 24 23 22 39 39 H 1.08000 * 119.99977 * 179.97438 * 25 24 23 40 40 H 1.08008 * 119.99855 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1673 -0.0011 6 6 4.1558 -2.6097 -0.0010 7 1 3.7215 -3.1486 0.8411 8 8 3.7712 -3.2592 -1.2414 9 6 3.5621 -4.5843 -1.1961 10 8 3.6964 -5.1819 -0.1546 11 6 3.1609 -5.3269 -2.4446 12 16 2.9564 -7.0841 -2.0620 13 6 2.5004 -7.6923 -3.6515 14 1 2.4249 -7.0136 -4.4881 15 6 2.2372 -9.0437 -3.8282 16 7 2.3278 -9.8707 -2.8082 17 14 1.7531 -9.6883 -5.5133 18 1 2.9737 -10.0825 -6.2619 19 1 0.8664 -10.8691 -5.3555 20 1 1.0346 -8.6262 -6.2620 21 6 5.6578 -2.6116 0.1223 22 6 6.4429 -2.3762 -0.9908 23 6 7.8205 -2.3735 -0.8768 24 6 8.4132 -2.6151 0.3484 25 6 7.6281 -2.8558 1.4605 26 6 6.2504 -2.8542 1.3474 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6958 -2.0073 -0.0005 31 1 4.0095 -0.6536 0.8888 32 1 4.0089 -0.6532 -0.8910 33 1 2.2200 -4.9246 -2.8202 34 1 3.9352 -5.2082 -3.2026 35 1 2.1442 -10.8151 -2.9317 36 1 5.9800 -2.1914 -1.9488 37 1 8.4339 -2.1852 -1.7456 38 1 9.4896 -2.6157 0.4369 39 1 8.0911 -3.0450 2.4177 40 1 5.6370 -3.0418 2.2163 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177978716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:57:12 Heat of formation + Delta-G solvation = -124.903215 kcal Electronic energy + Delta-G solvation = -24105.057428 eV Core-core repulsion = 20396.040650 eV Total energy + Delta-G solvation = -3709.016778 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.91264 -40.57433 -40.00338 -37.84037 -35.91819 -34.60484 -33.53279 -31.86138 -31.26967 -31.12573 -28.69643 -27.69200 -24.69839 -23.74519 -23.02315 -21.85415 -21.41310 -19.92614 -18.82581 -18.36349 -18.03438 -17.36968 -17.16731 -16.89306 -16.74418 -16.50779 -16.09509 -16.01713 -15.51986 -14.79632 -14.73392 -14.63505 -14.46854 -14.30054 -14.07783 -13.79614 -13.59707 -13.29429 -13.18155 -13.01212 -12.90373 -12.75221 -12.62532 -12.55100 -11.94456 -11.79506 -11.78208 -11.59278 -11.15607 -11.04277 -10.37010 -10.26506 -9.88063 -9.82280 -8.72046 -8.37115 -6.16119 0.24365 0.44065 0.99942 1.11180 1.41231 1.43245 1.54884 1.58419 1.83471 2.13904 2.24118 2.77804 2.98327 3.23552 3.48249 3.56402 3.75520 3.81238 3.94754 4.07246 4.11319 4.17396 4.24710 4.41855 4.44590 4.49048 4.55413 4.63646 4.65561 4.67929 4.95756 5.06622 5.07312 5.19739 5.26881 5.41856 5.48422 5.55594 5.56926 6.02498 6.18522 6.42819 6.65790 7.05240 7.14458 8.71900 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.010315 B = 0.003417 C = 0.002750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2713.758569 B = 8192.420106 C =10181.007654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.509 3.491 3 O -0.597 6.597 4 N -0.724 5.724 5 C 0.138 3.862 6 C 0.126 3.874 7 H 0.098 0.902 8 O -0.337 6.337 9 C 0.490 3.510 10 O -0.511 6.511 11 C -0.109 4.109 12 S -0.132 6.132 13 C -0.549 4.549 14 H 0.085 0.915 15 C 0.019 3.981 16 N -0.909 5.909 17 Si 0.996 3.004 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.258 1.258 21 C -0.129 4.129 22 C -0.111 4.111 23 C -0.130 4.130 24 C -0.116 4.116 25 C -0.128 4.128 26 C -0.112 4.112 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.413 0.587 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.272 0.728 36 H 0.127 0.873 37 H 0.143 0.857 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.945 18.203 5.597 19.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.298 3.702 3 O -0.478 6.478 4 N -0.377 5.377 5 C 0.014 3.986 6 C 0.070 3.930 7 H 0.116 0.884 8 O -0.255 6.255 9 C 0.332 3.668 10 O -0.398 6.398 11 C -0.258 4.258 12 S 0.095 5.905 13 C -0.697 4.697 14 H 0.103 0.897 15 C -0.186 4.186 16 N -0.545 5.545 17 Si 0.818 3.182 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.182 1.182 21 C -0.130 4.130 22 C -0.129 4.129 23 C -0.148 4.148 24 C -0.134 4.134 25 C -0.145 4.145 26 C -0.130 4.130 27 H 0.130 0.870 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.249 0.751 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.142 0.858 34 H 0.134 0.866 35 H 0.081 0.919 36 H 0.145 0.855 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.525 18.069 6.986 19.895 hybrid contribution -0.471 -0.501 -1.789 1.917 sum 4.055 17.568 5.197 18.764 Atomic orbital electron populations 1.21920 0.88104 1.06205 1.06361 1.21550 0.92283 0.82409 0.73954 1.90703 1.72109 1.32904 1.52087 1.46089 1.06796 1.09688 1.75083 1.21326 0.80806 0.92596 1.03833 1.21754 0.92137 0.92913 0.86151 0.88439 1.86607 1.79123 1.21766 1.37992 1.22964 0.72843 0.80954 0.90027 1.90668 1.47577 1.68484 1.33071 1.23095 1.06876 0.99127 0.96665 1.85510 1.90441 0.97433 1.17067 1.23193 1.54293 0.96812 0.95353 0.89694 1.26058 0.94375 0.95873 1.02339 1.70149 1.46950 1.04630 1.32820 0.84986 0.78437 0.77987 0.76806 1.19450 1.20277 1.18158 1.19927 0.93830 1.03843 0.95357 1.21198 0.94570 0.98779 0.98350 1.21479 0.94430 0.99904 0.98964 1.21598 1.01386 0.97873 0.92514 1.21467 0.93206 0.99677 1.00196 1.21245 0.96106 0.98712 0.96910 0.86951 0.88510 0.88022 0.75116 0.88696 0.90664 0.85772 0.86567 0.91866 0.85482 0.83877 0.83368 0.83526 0.84929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 10.30 71.24 0.73 -1.27 16 2 C 0.51 10.65 7.94 87.66 0.70 11.35 16 3 O -0.60 -17.86 17.10 -3.04 -0.05 -17.92 16 4 N -0.72 -13.88 5.51 -463.08 -2.55 -16.43 16 5 C 0.14 2.92 5.33 86.38 0.46 3.38 16 6 C 0.13 2.99 2.18 29.85 0.07 3.06 16 7 H 0.10 2.41 7.02 -2.39 -0.02 2.39 16 8 O -0.34 -9.34 9.15 -51.41 -0.47 -9.81 16 9 C 0.49 17.09 7.94 71.24 0.57 17.65 16 10 O -0.51 -20.94 15.08 21.98 0.33 -20.60 16 11 C -0.11 -4.12 6.27 71.24 0.45 -3.68 16 12 S -0.13 -6.85 20.58 -56.49 -1.16 -8.01 16 13 C -0.55 -29.93 9.50 67.96 0.65 -29.29 16 14 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 15 C 0.02 1.03 5.49 84.86 0.47 1.50 16 16 N -0.91 -53.68 13.22 21.65 0.29 -53.39 16 17 Si 1.00 42.01 29.55 68.60 2.03 44.04 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 20 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 21 C -0.13 -3.13 4.95 -19.86 -0.10 -3.23 16 22 C -0.11 -2.61 9.36 22.27 0.21 -2.40 16 23 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 24 C -0.12 -2.12 10.05 22.27 0.22 -1.90 16 25 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 26 C -0.11 -2.49 9.67 22.27 0.22 -2.28 16 27 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.41 6.71 8.47 -92.71 -0.79 5.92 16 31 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 33 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 34 H 0.12 4.09 8.14 -2.40 -0.02 4.07 16 35 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.13 2.88 7.77 -2.91 -0.02 2.86 16 37 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 40 H 0.13 2.59 8.04 -2.91 -0.02 2.57 16 Total: -1.00 -75.09 369.16 3.76 -71.33 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.27 Total: 22.53 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 5.08 Total: -11.74 kcal Atomic # 7 Polarization: -67.56 SS G_CDS: -2.26 Total: -69.82 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -0.19 Total: -48.33 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: -6.85 SS G_CDS: -1.16 Total: -8.01 kcal Total: -75.09 3.76 -71.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177978716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.570 kcal (2) G-P(sol) polarization free energy of solvation -75.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds