Wall clock time and date at job start Sat Apr 11 2020 00:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46874 * 2 1 4 4 C 1.50703 * 109.46851 * 240.00121 * 2 1 3 5 5 H 1.08000 * 119.99731 * 245.63114 * 4 2 1 6 6 C 1.37873 * 119.99751 * 65.63472 * 4 2 1 7 7 N 1.31515 * 119.99903 * 197.08458 * 6 4 2 8 8 Si 1.86800 * 120.00581 * 17.35525 * 6 4 2 9 9 H 1.48497 * 109.47624 * 179.72305 * 8 6 4 10 10 H 1.48500 * 109.47000 * 299.72900 * 8 6 4 11 11 H 1.48502 * 109.46853 * 59.72557 * 8 6 4 12 12 N 1.46494 * 109.47041 * 120.00178 * 2 1 3 13 13 S 1.65598 * 120.00406 * 264.99929 * 12 2 1 14 14 O 1.42095 * 106.40608 * 178.54103 * 13 12 2 15 15 O 1.42103 * 106.40007 * 311.46115 * 13 12 2 16 16 C 1.76203 * 107.21719 * 64.99923 * 13 12 2 17 17 C 1.28827 * 116.59587 * 255.00233 * 16 13 12 18 18 C 1.45822 * 133.15805 * 182.59128 * 17 16 13 19 19 C 1.40945 * 116.16298 * 180.99974 * 18 17 16 20 20 C 1.37327 * 121.12297 * 180.23697 * 19 18 17 21 21 C 1.38428 * 119.94512 * 0.03614 * 20 19 18 22 22 C 1.37710 * 119.75197 * 359.87068 * 21 20 19 23 23 C 1.39065 * 125.26440 * 1.01923 * 18 17 16 24 24 O 1.34878 * 124.58019 * 359.13624 * 23 18 17 25 25 C 1.40004 * 123.33302 * 35.68224 * 24 23 18 26 26 C 1.48485 * 116.59353 * 74.74796 * 16 13 12 27 27 H 1.09001 * 109.47051 * 66.45304 * 1 2 3 28 28 H 1.09000 * 109.47192 * 186.45892 * 1 2 3 29 29 H 1.08998 * 109.46869 * 306.45753 * 1 2 3 30 30 H 0.97005 * 119.99674 * 355.25602 * 7 6 4 31 31 H 0.96997 * 120.00081 * 84.99885 * 12 2 1 32 32 H 1.08006 * 113.42075 * 2.61756 * 17 16 13 33 33 H 1.08001 * 119.43966 * 0.20117 * 19 18 17 34 34 H 1.07991 * 120.02994 * 180.02562 * 20 19 18 35 35 H 1.08000 * 120.12363 * 179.84261 * 21 20 19 36 36 H 1.07996 * 119.46139 * 179.97438 * 22 21 20 37 37 H 1.08993 * 108.90873 * 43.21716 * 25 24 23 38 38 H 1.09001 * 108.90811 * 161.74346 * 25 24 23 39 39 H 1.09000 * 108.92252 * 265.66861 * 26 16 13 40 40 H 1.08997 * 108.92668 * 24.23152 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5761 -1.6385 -1.1340 6 6 1.7976 -0.1754 -2.4794 7 7 1.9243 -0.9271 -3.5511 8 14 1.3071 1.6189 -2.6499 9 1 1.1207 1.9469 -4.0861 10 1 0.0365 1.8563 -1.9189 11 1 2.3743 2.4801 -2.0800 12 7 2.0183 -0.6906 1.1961 13 16 2.4122 0.1770 2.5505 14 8 2.8124 -0.7699 3.5314 15 8 3.2437 1.2442 2.1156 16 6 0.9275 0.9146 3.1475 17 6 0.7856 2.1775 2.9365 18 6 -0.2454 3.1407 3.3049 19 6 -0.0479 4.4633 2.8597 20 6 -0.9531 5.4535 3.1528 21 6 -2.0818 5.1594 3.8983 22 6 -2.2926 3.8723 4.3403 23 6 -1.3846 2.8523 4.0486 24 8 -1.7016 1.6291 4.5203 25 6 -0.7491 0.7099 4.9764 26 6 -0.0318 0.0143 3.8358 27 1 -0.3633 0.4106 -0.9421 28 1 -0.3633 -1.0211 0.1156 29 1 -0.3633 0.6107 0.8265 30 1 2.2490 -1.8375 -3.4693 31 1 2.1110 -1.6562 1.1948 32 1 1.5964 2.6120 2.3705 33 1 0.8305 4.7022 2.2785 34 1 -0.7844 6.4609 2.8023 35 1 -2.7943 5.9365 4.1327 36 1 -3.1745 3.6481 4.9219 37 1 -0.0170 1.2349 5.5898 38 1 -1.2480 -0.0405 5.5898 39 1 -0.7677 -0.3374 3.1127 40 1 0.5106 -0.8443 4.2315 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184274138.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:57:19 Heat of formation + Delta-G solvation = -67.818288 kcal Electronic energy + Delta-G solvation = -25933.250048 eV Core-core repulsion = 22226.708658 eV Total energy + Delta-G solvation = -3706.541390 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 323.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.71951 -37.94276 -36.98554 -36.02100 -35.65562 -35.39505 -32.32421 -32.09409 -30.84791 -29.07525 -28.43224 -25.65024 -24.80945 -22.97899 -21.77275 -20.83490 -20.46735 -18.86725 -18.13954 -17.68939 -17.47088 -16.67486 -16.36774 -15.99832 -15.28707 -15.15175 -14.84399 -14.39511 -14.24661 -13.72093 -13.50627 -13.44531 -13.13826 -12.97761 -12.48885 -12.30293 -12.15114 -12.11148 -11.93107 -11.76006 -11.67901 -11.60641 -11.23061 -11.19797 -10.77640 -10.61606 -10.52465 -10.38943 -10.12501 -9.80632 -9.27271 -8.83712 -8.65533 -8.40622 -8.35033 -6.58519 -4.21712 0.37122 0.81871 1.15381 2.03156 2.99208 3.29773 3.39264 3.45906 3.54727 3.63033 4.04376 4.30874 4.38107 4.47974 4.60821 4.79148 4.87830 4.99800 5.02846 5.08270 5.12684 5.14411 5.25843 5.37294 5.53627 5.70723 5.73723 5.91022 5.97329 6.05042 6.10937 6.23539 6.25391 6.40053 6.43376 6.52572 6.52767 7.04738 7.17844 7.45063 7.61112 7.93405 8.25813 8.77199 9.46690 10.81555 Molecular weight = 323.10amu Principal moments of inertia in cm(-1) A = 0.012859 B = 0.005296 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.932355 B = 5285.952474 C = 6463.350685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.247 3.753 3 H 0.039 0.961 4 C -0.605 4.605 5 H 0.065 0.935 6 C 0.037 3.963 7 N -0.898 5.898 8 Si 1.032 2.968 9 H -0.281 1.281 10 H -0.271 1.271 11 H -0.276 1.276 12 N -1.089 6.089 13 S 2.673 3.327 14 O -0.974 6.974 15 O -0.962 6.962 16 C -0.686 4.686 17 C 0.028 3.972 18 C -0.141 4.141 19 C -0.062 4.062 20 C -0.156 4.156 21 C -0.071 4.071 22 C -0.159 4.159 23 C 0.170 3.830 24 O -0.320 6.320 25 C 0.081 3.919 26 C -0.103 4.103 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.026 0.974 30 H 0.270 0.730 31 H 0.413 0.587 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.057 0.943 38 H 0.114 0.886 39 H 0.097 0.903 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.465 9.302 16.704 20.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.141 3.859 3 H 0.057 0.943 4 C -0.645 4.645 5 H 0.084 0.916 6 C -0.170 4.170 7 N -0.531 5.531 8 Si 0.859 3.141 9 H -0.206 1.206 10 H -0.197 1.197 11 H -0.202 1.202 12 N -0.850 5.850 13 S 2.763 3.237 14 O -0.964 6.964 15 O -0.952 6.952 16 C -0.772 4.772 17 C 0.008 3.992 18 C -0.143 4.143 19 C -0.080 4.080 20 C -0.174 4.174 21 C -0.089 4.089 22 C -0.178 4.178 23 C 0.125 3.875 24 O -0.234 6.234 25 C 0.006 3.994 26 C -0.140 4.140 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.248 0.752 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.076 0.924 38 H 0.132 0.868 39 H 0.115 0.885 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.259 10.636 15.978 20.896 hybrid contribution 0.046 -1.524 0.952 1.797 sum -8.213 9.112 16.929 20.907 Atomic orbital electron populations 1.22726 0.98942 1.00912 1.00573 1.18869 0.90306 0.93089 0.83661 0.94328 1.22044 1.41303 1.10653 0.90464 0.91638 1.25691 0.94525 1.04973 0.91818 1.70862 1.40971 1.10024 1.31229 0.84240 0.77529 0.75537 0.76756 1.20603 1.19713 1.20161 1.55273 1.83672 1.19273 1.26799 1.02387 0.74449 0.73821 0.73064 1.93530 1.81410 1.61634 1.59864 1.93564 1.63292 1.56745 1.81621 1.31221 1.24843 1.05018 1.16128 1.19944 0.95818 0.92606 0.90866 1.18662 0.96602 0.94984 1.04091 1.21637 0.99070 0.90993 0.96333 1.20950 0.95333 0.99728 1.01379 1.21073 0.96842 0.95620 0.95369 1.20914 1.01270 0.91338 1.04257 1.18904 0.92994 0.84011 0.91632 1.84592 1.38729 1.23152 1.76921 1.22021 0.91753 0.90805 0.94839 1.20233 0.97762 0.97740 0.98297 0.91521 0.92829 0.95467 0.91990 0.75185 0.85391 0.84879 0.85192 0.85027 0.84945 0.92444 0.86807 0.88456 0.88052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.53 9.19 37.16 0.34 -3.19 16 2 C 0.25 5.57 2.48 -69.08 -0.17 5.40 16 3 H 0.04 0.90 6.16 -51.93 -0.32 0.58 16 4 C -0.61 -16.18 9.02 -34.44 -0.31 -16.50 16 5 H 0.07 1.86 8.05 -52.49 -0.42 1.43 16 6 C 0.04 1.02 5.29 -17.82 -0.09 0.93 16 7 N -0.90 -26.52 13.70 55.43 0.76 -25.76 16 8 Si 1.03 24.15 26.28 -169.99 -4.47 19.69 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.27 -5.74 5.76 56.52 0.33 -5.42 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 N -1.09 -21.19 5.46 -5.88 -0.03 -21.22 16 13 S 2.67 48.40 5.60 -107.50 -0.60 47.80 16 14 O -0.97 -18.41 17.04 -57.17 -0.97 -19.39 16 15 O -0.96 -20.00 15.68 -57.17 -0.90 -20.90 16 16 C -0.69 -10.64 4.71 -36.50 -0.17 -10.82 16 17 C 0.03 0.42 8.48 -37.69 -0.32 0.10 16 18 C -0.14 -1.96 5.83 -105.53 -0.62 -2.58 16 19 C -0.06 -0.74 9.55 -38.89 -0.37 -1.11 16 20 C -0.16 -1.51 10.02 -39.84 -0.40 -1.90 16 21 C -0.07 -0.64 10.05 -39.70 -0.40 -1.04 16 22 C -0.16 -1.70 9.80 -39.25 -0.38 -2.08 16 23 C 0.17 2.23 6.48 -38.75 -0.25 1.98 16 24 O -0.32 -4.14 9.55 -14.07 -0.13 -4.27 16 25 C 0.08 0.92 6.31 36.47 0.23 1.15 16 26 C -0.10 -1.34 5.73 -29.62 -0.17 -1.51 16 27 H 0.07 1.43 4.87 -51.93 -0.25 1.18 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.03 0.48 7.06 -51.93 -0.37 0.12 16 30 H 0.27 7.92 8.73 -40.82 -0.36 7.56 16 31 H 0.41 7.44 8.82 -34.46 -0.30 7.14 16 32 H 0.13 2.00 5.95 -52.48 -0.31 1.69 16 33 H 0.13 1.40 7.80 -52.49 -0.41 0.99 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 38 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.10 1.22 7.10 -51.93 -0.37 0.85 16 LS Contribution 337.45 15.07 5.09 5.09 Total: -1.00 -32.92 337.45 -9.29 -42.21 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -4.94 Total: 7.92 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: -3.09 Total: -31.17 kcal Atomic # 7 Polarization: -47.71 SS G_CDS: 0.73 Total: -46.98 kcal Atomic # 8 Polarization: -42.55 SS G_CDS: -2.00 Total: -44.55 kcal Atomic # 14 Polarization: 24.15 SS G_CDS: -4.47 Total: 19.69 kcal Atomic # 16 Polarization: 48.40 SS G_CDS: -0.60 Total: 47.80 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.92 -9.29 -42.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184274138.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.605 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds